Wall clock time and date at job start Tue Mar 31 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35563 * 125.82591 * 2 1 4 4 N 1.35406 * 107.15848 * 179.77226 * 3 2 1 5 5 H 0.96998 * 126.43696 * 180.21496 * 4 3 2 6 6 C 1.36662 * 107.12023 * 0.35617 * 4 3 2 7 7 C 1.47409 * 125.86158 * 179.89779 * 6 4 3 8 8 O 1.21604 * 119.99928 * 6.03762 * 7 6 4 9 9 N 1.34779 * 120.00387 * 186.04061 * 7 6 4 10 10 C 1.46921 * 120.62460 * 6.92981 * 9 7 6 11 11 C 1.53197 * 108.77371 * 126.39575 * 10 9 7 12 12 C 1.53050 * 109.30863 * 54.63447 * 11 10 9 13 13 C 1.53040 * 109.53822 * 298.63150 * 12 11 10 14 14 C 1.46928 * 120.63152 * 186.93923 * 9 7 6 15 15 H 1.08993 * 109.70555 * 113.75004 * 14 9 7 16 16 C 1.53001 * 109.58570 * 353.38804 * 14 9 7 17 17 H 1.08997 * 110.88675 * 313.81191 * 16 14 9 18 18 C 1.55160 * 111.03441 * 77.71469 * 16 14 9 19 19 C 1.54341 * 103.01674 * 153.39120 * 18 16 14 20 20 N 1.47017 * 107.26394 * 338.14146 * 19 18 16 21 21 C 1.36944 * 125.64597 * 178.84855 * 20 19 18 22 22 H 1.07997 * 119.99954 * 174.74421 * 21 20 19 23 23 C 1.38810 * 119.99558 * 354.74695 * 21 20 19 24 24 N 1.31624 * 119.99976 * 214.56669 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 34.57039 * 23 21 20 26 26 H 1.48499 * 109.47209 * 174.27392 * 25 23 21 27 27 H 1.48496 * 109.47196 * 54.27321 * 25 23 21 28 28 H 1.48500 * 109.46952 * 294.27274 * 25 23 21 29 29 C 1.47418 * 108.70778 * 358.58618 * 20 19 18 30 30 N 1.31608 * 108.27353 * 359.63563 * 6 4 3 31 31 H 1.09007 * 109.46967 * 269.98115 * 1 2 3 32 32 H 1.08993 * 109.47116 * 29.97745 * 1 2 3 33 33 H 1.08996 * 109.47240 * 149.98418 * 1 2 3 34 34 H 1.08001 * 126.41723 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.59332 * 6.60903 * 10 9 7 36 36 H 1.09008 * 109.70830 * 246.24996 * 10 9 7 37 37 H 1.08999 * 109.49641 * 294.68638 * 11 10 9 38 38 H 1.09000 * 109.49976 * 174.57917 * 11 10 9 39 39 H 1.09000 * 109.45748 * 178.61719 * 12 11 10 40 40 H 1.08999 * 109.45961 * 58.65641 * 12 11 10 41 41 H 1.08997 * 109.49980 * 301.42047 * 13 12 11 42 42 H 1.08993 * 109.52104 * 181.33370 * 13 12 11 43 43 H 1.08996 * 110.71769 * 271.95098 * 18 16 14 44 44 H 1.08996 * 110.71815 * 35.04764 * 18 16 14 45 45 H 1.08998 * 109.98849 * 218.66749 * 19 18 16 46 46 H 1.08996 * 109.77464 * 97.49716 * 19 18 16 47 47 H 0.97000 * 119.99673 * 5.00413 * 24 23 21 48 48 H 1.08998 * 110.36906 * 143.19819 * 29 20 19 49 49 H 1.09008 * 110.36409 * 265.51877 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0051 5 1 4.3789 1.2207 0.0093 6 6 3.5464 -0.7004 0.0001 7 6 4.7174 -1.5959 0.0009 8 8 5.8361 -1.1337 0.1171 9 7 4.5480 -2.9268 -0.1273 10 6 3.2221 -3.4878 -0.4199 11 6 3.3287 -4.3867 -1.6559 12 6 4.4186 -5.4362 -1.4258 13 6 5.7650 -4.7389 -1.2180 14 6 5.6859 -3.8441 0.0230 15 1 5.5456 -4.4615 0.9102 16 6 6.9797 -3.0387 0.1578 17 1 7.0259 -2.2491 -0.5922 18 6 7.1265 -2.4561 1.5884 19 6 8.6550 -2.3180 1.7523 20 7 9.2817 -3.2386 0.7925 21 6 10.6285 -3.4013 0.6056 22 1 10.9921 -4.1653 -0.0656 23 6 11.5263 -2.5843 1.2789 24 7 12.6505 -2.2225 0.6976 25 14 11.1392 -1.9983 3.0098 26 1 12.3071 -1.2614 3.5558 27 1 10.8443 -3.1690 3.8744 28 1 9.9583 -1.0985 2.9753 29 6 8.2203 -3.9620 0.0691 30 7 2.2861 -1.0792 0.0001 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.9711 2.1277 0.0004 35 1 2.5181 -2.6791 -0.6159 36 1 2.8758 -4.0755 0.4304 37 1 3.5847 -3.7809 -2.5252 38 1 2.3744 -4.8848 -1.8270 39 1 4.4798 -6.0925 -2.2940 40 1 4.1745 -6.0255 -0.5419 41 1 5.9979 -4.1299 -2.0914 42 1 6.5449 -5.4873 -1.0778 43 1 6.6391 -1.4839 1.6608 44 1 6.7209 -3.1455 2.3289 45 1 8.9465 -2.5862 2.7678 46 1 8.9580 -1.2937 1.5357 47 1 12.8190 -2.4659 -0.2261 48 1 8.5064 -4.1142 -0.9716 49 1 8.0168 -4.9183 0.5512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039228868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:40 Heat of formation + Delta-G solvation = 93.128528 kcal Electronic energy + Delta-G solvation = -30223.651839 eV Core-core repulsion = 26382.099696 eV Total energy + Delta-G solvation = -3841.552143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60241 -40.52838 -37.49175 -37.12736 -33.72227 -33.25136 -32.86924 -31.62771 -30.99536 -29.22816 -27.73639 -27.43348 -25.41190 -24.15769 -23.32838 -22.45795 -21.22532 -20.64049 -20.21964 -19.82994 -19.62504 -17.93279 -17.25115 -16.48408 -16.05320 -16.01554 -15.16931 -14.91010 -14.76549 -14.39396 -14.22748 -14.09978 -13.74124 -13.43748 -13.36576 -13.18647 -13.15206 -12.90473 -12.69542 -12.54461 -12.37754 -12.22091 -11.83199 -11.42728 -11.19568 -11.10219 -10.87505 -10.80076 -10.47628 -10.40218 -10.22885 -10.12943 -9.82215 -9.66400 -9.55129 -9.10689 -8.83630 -8.65839 -8.42898 -8.15072 -6.91824 -6.25641 -2.97069 1.17654 2.28613 2.37396 3.23590 3.23976 3.58520 3.65067 3.83429 3.94133 4.51763 4.71244 4.79140 4.79570 4.80236 4.88136 4.92657 5.04187 5.11742 5.33068 5.37211 5.38921 5.43684 5.45975 5.54584 5.56335 5.63216 5.65048 5.80855 5.82584 5.90135 5.94421 5.98415 6.01739 6.05804 6.11419 6.23793 6.35378 6.37705 6.49653 6.63360 6.67455 6.78139 6.89868 6.91868 7.11781 7.22602 7.32580 7.54195 7.89586 8.15129 8.47267 9.16835 9.76927 10.46045 11.22813 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.003703 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.307817 B = 7560.441118 C = 8960.852783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.007 4.007 3 C -0.028 4.028 4 N -0.522 5.522 5 H 0.432 0.568 6 C 0.162 3.838 7 C 0.587 3.413 8 O -0.505 6.505 9 N -0.580 5.580 10 C 0.074 3.926 11 C -0.133 4.133 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.161 3.839 15 H 0.074 0.926 16 C -0.097 4.097 17 H 0.111 0.889 18 C -0.121 4.121 19 C 0.126 3.874 20 N -0.609 5.609 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.907 5.907 25 Si 1.032 2.968 26 H -0.300 1.300 27 H -0.299 1.299 28 H -0.277 1.277 29 C 0.141 3.859 30 N -0.442 5.442 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.184 0.816 35 H 0.143 0.857 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.017 0.983 46 H 0.040 0.960 47 H 0.263 0.737 48 H 0.041 0.959 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.884 2.622 -4.002 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.167 4.167 4 N -0.124 5.124 5 H 0.272 0.728 6 C -0.100 4.100 7 C 0.372 3.628 8 O -0.380 6.380 9 N -0.312 5.312 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.092 0.908 16 C -0.116 4.116 17 H 0.128 0.872 18 C -0.159 4.159 19 C 0.001 3.999 20 N -0.336 5.336 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.547 5.547 25 Si 0.864 3.136 26 H -0.228 1.228 27 H -0.227 1.227 28 H -0.203 1.203 29 C 0.014 3.986 30 N -0.167 5.167 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -27.778 2.855 -2.677 28.052 hybrid contribution 0.006 -0.010 -1.073 1.073 sum -27.772 2.845 -3.750 28.168 Atomic orbital electron populations 1.20053 0.87110 1.02889 1.02461 1.21002 0.97011 0.88282 1.07649 1.22701 0.83027 1.01001 1.09934 1.42905 1.09306 1.07624 1.52526 0.72782 1.22973 0.93845 0.82397 1.10765 1.16655 0.85349 0.82001 0.78780 1.90935 1.22274 1.76012 1.48806 1.47668 1.10407 1.04304 1.68780 1.22765 0.84620 1.00637 0.96847 1.21922 0.99118 0.97615 0.98445 1.21569 0.94925 0.97666 1.01767 1.22000 0.97616 0.99077 0.98158 1.21410 0.85042 0.89966 0.97731 0.90773 1.22871 0.91243 0.97646 0.99851 0.87158 1.23011 0.96589 1.01172 0.95101 1.21791 0.91240 0.94709 0.92150 1.44841 1.01739 1.45002 1.42048 1.19944 0.79988 1.18808 1.27469 0.90481 1.25537 0.94892 0.95680 1.05206 1.70930 1.29311 1.40225 1.14216 0.84467 0.74541 0.76453 0.78155 1.22817 1.22715 1.20337 1.21621 0.88060 0.93207 0.95698 1.69828 0.99449 1.29547 1.17830 0.91212 0.91187 0.90964 0.79862 0.84017 0.91877 0.91898 0.90994 0.91865 0.91868 0.91344 0.90066 0.89387 0.93489 0.96531 0.94207 0.92747 0.94086 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.01 0.38 -0.02 16 2 C -0.01 -0.06 7.07 -83.00 -0.59 -0.65 16 3 C -0.03 -0.21 11.91 -16.93 -0.20 -0.42 16 4 N -0.52 -5.06 6.15 -10.78 -0.07 -5.12 16 5 H 0.43 3.56 8.96 -40.82 -0.37 3.20 16 6 C 0.16 2.00 7.68 -154.53 -1.19 0.81 16 7 C 0.59 8.51 7.36 -12.53 -0.09 8.42 16 8 O -0.50 -8.68 10.04 5.27 0.05 -8.63 16 9 N -0.58 -7.70 2.97 -166.48 -0.49 -8.20 16 10 C 0.07 0.79 6.10 -3.71 -0.02 0.77 16 11 C -0.13 -1.25 6.08 -26.60 -0.16 -1.41 16 12 C -0.12 -1.20 5.88 -26.68 -0.16 -1.36 16 13 C -0.13 -1.63 4.86 -26.61 -0.13 -1.76 16 14 C 0.16 2.32 2.57 -67.59 -0.17 2.15 16 15 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 16 C -0.10 -1.79 1.91 -88.47 -0.17 -1.96 16 17 H 0.11 2.26 5.95 -52.07 -0.31 1.95 16 18 C -0.12 -2.42 5.56 -24.89 -0.14 -2.56 16 19 C 0.13 3.10 4.57 -3.06 -0.01 3.09 16 20 N -0.61 -16.29 3.38 -170.07 -0.57 -16.87 16 21 C -0.34 -10.21 10.39 -15.06 -0.16 -10.37 16 22 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 23 C -0.01 -0.36 5.42 -17.43 -0.09 -0.46 16 24 N -0.91 -29.55 13.70 55.49 0.76 -28.79 16 25 Si 1.03 27.82 25.17 -169.99 -4.28 23.54 16 26 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 27 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 28 H -0.28 -6.96 5.04 56.52 0.29 -6.68 16 29 C 0.14 3.05 5.35 -2.53 -0.01 3.04 16 30 N -0.44 -5.02 7.64 -7.50 -0.06 -5.08 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.14 1.57 4.13 -63.15 -0.26 1.30 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.04 7.19 -51.93 -0.37 0.67 16 43 H 0.09 1.73 5.52 -52.12 -0.29 1.45 16 44 H 0.05 0.87 7.85 -51.93 -0.41 0.47 16 45 H 0.02 0.43 4.94 -51.93 -0.26 0.18 16 46 H 0.04 1.06 6.66 -51.93 -0.35 0.71 16 47 H 0.26 8.44 8.73 -40.82 -0.36 8.08 16 48 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 49 H 0.01 0.27 7.86 -51.92 -0.41 -0.14 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -35.95 364.64 -9.85 -45.81 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.77 Total: 0.53 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.92 Total: -2.68 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.43 Total: -64.06 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.05 Total: -8.63 kcal Atomic # 14 Polarization: 27.82 SS G_CDS: -4.28 Total: 23.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.95 -9.85 -45.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039228868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.934 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds