Wall clock time and date at job start Tue Mar 31 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35563 * 125.82591 * 2 1 4 4 N 1.35406 * 107.15848 * 179.77226 * 3 2 1 5 5 H 0.96998 * 126.43696 * 180.21496 * 4 3 2 6 6 C 1.36662 * 107.12023 * 0.35617 * 4 3 2 7 7 C 1.47409 * 125.86158 * 179.89779 * 6 4 3 8 8 O 1.21604 * 119.99928 * 6.03762 * 7 6 4 9 9 N 1.34779 * 120.00387 * 186.04061 * 7 6 4 10 10 C 1.46921 * 120.62460 * 6.92981 * 9 7 6 11 11 C 1.53197 * 108.77371 * 126.39575 * 10 9 7 12 12 C 1.53050 * 109.30863 * 54.63447 * 11 10 9 13 13 C 1.53040 * 109.53822 * 298.63150 * 12 11 10 14 14 C 1.46928 * 120.63152 * 186.93923 * 9 7 6 15 15 H 1.08993 * 109.70555 * 113.75004 * 14 9 7 16 16 C 1.53001 * 109.58570 * 353.38804 * 14 9 7 17 17 H 1.08997 * 110.88675 * 313.81191 * 16 14 9 18 18 C 1.55160 * 111.03441 * 77.71469 * 16 14 9 19 19 C 1.54341 * 103.01674 * 153.39120 * 18 16 14 20 20 N 1.47017 * 107.26394 * 338.14146 * 19 18 16 21 21 C 1.36944 * 125.64597 * 178.84855 * 20 19 18 22 22 H 1.07997 * 119.99954 * 174.74421 * 21 20 19 23 23 C 1.38810 * 119.99558 * 354.74695 * 21 20 19 24 24 N 1.31624 * 119.99976 * 214.56669 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 34.57039 * 23 21 20 26 26 H 1.48499 * 109.47209 * 174.27392 * 25 23 21 27 27 H 1.48496 * 109.47196 * 54.27321 * 25 23 21 28 28 H 1.48500 * 109.46952 * 294.27274 * 25 23 21 29 29 C 1.47418 * 108.70778 * 358.58618 * 20 19 18 30 30 N 1.31608 * 108.27353 * 359.63563 * 6 4 3 31 31 H 1.09007 * 109.46967 * 269.98115 * 1 2 3 32 32 H 1.08993 * 109.47116 * 29.97745 * 1 2 3 33 33 H 1.08996 * 109.47240 * 149.98418 * 1 2 3 34 34 H 1.08001 * 126.41723 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.59332 * 6.60903 * 10 9 7 36 36 H 1.09008 * 109.70830 * 246.24996 * 10 9 7 37 37 H 1.08999 * 109.49641 * 294.68638 * 11 10 9 38 38 H 1.09000 * 109.49976 * 174.57917 * 11 10 9 39 39 H 1.09000 * 109.45748 * 178.61719 * 12 11 10 40 40 H 1.08999 * 109.45961 * 58.65641 * 12 11 10 41 41 H 1.08997 * 109.49980 * 301.42047 * 13 12 11 42 42 H 1.08993 * 109.52104 * 181.33370 * 13 12 11 43 43 H 1.08996 * 110.71769 * 271.95098 * 18 16 14 44 44 H 1.08996 * 110.71815 * 35.04764 * 18 16 14 45 45 H 1.08998 * 109.98849 * 218.66749 * 19 18 16 46 46 H 1.08996 * 109.77464 * 97.49716 * 19 18 16 47 47 H 0.97000 * 119.99673 * 5.00413 * 24 23 21 48 48 H 1.08998 * 110.36906 * 143.19819 * 29 20 19 49 49 H 1.09008 * 110.36409 * 265.51877 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0051 5 1 4.3789 1.2207 0.0093 6 6 3.5464 -0.7004 0.0001 7 6 4.7174 -1.5959 0.0009 8 8 5.8361 -1.1337 0.1171 9 7 4.5480 -2.9268 -0.1273 10 6 3.2221 -3.4878 -0.4199 11 6 3.3287 -4.3867 -1.6559 12 6 4.4186 -5.4362 -1.4258 13 6 5.7650 -4.7389 -1.2180 14 6 5.6859 -3.8441 0.0230 15 1 5.5456 -4.4615 0.9102 16 6 6.9797 -3.0387 0.1578 17 1 7.0259 -2.2491 -0.5922 18 6 7.1265 -2.4561 1.5884 19 6 8.6550 -2.3180 1.7523 20 7 9.2817 -3.2386 0.7925 21 6 10.6285 -3.4013 0.6056 22 1 10.9921 -4.1653 -0.0656 23 6 11.5263 -2.5843 1.2789 24 7 12.6505 -2.2225 0.6976 25 14 11.1392 -1.9983 3.0098 26 1 12.3071 -1.2614 3.5558 27 1 10.8443 -3.1690 3.8744 28 1 9.9583 -1.0985 2.9753 29 6 8.2203 -3.9620 0.0691 30 7 2.2861 -1.0792 0.0001 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.9711 2.1277 0.0004 35 1 2.5181 -2.6791 -0.6159 36 1 2.8758 -4.0755 0.4304 37 1 3.5847 -3.7809 -2.5252 38 1 2.3744 -4.8848 -1.8270 39 1 4.4798 -6.0925 -2.2940 40 1 4.1745 -6.0255 -0.5419 41 1 5.9979 -4.1299 -2.0914 42 1 6.5449 -5.4873 -1.0778 43 1 6.6391 -1.4839 1.6608 44 1 6.7209 -3.1455 2.3289 45 1 8.9465 -2.5862 2.7678 46 1 8.9580 -1.2937 1.5357 47 1 12.8190 -2.4659 -0.2261 48 1 8.5064 -4.1142 -0.9716 49 1 8.0168 -4.9183 0.5512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039228868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:39 Heat of formation + Delta-G solvation = 69.082711 kcal Electronic energy + Delta-G solvation = -30224.694543 eV Core-core repulsion = 26382.099696 eV Total energy + Delta-G solvation = -3842.594848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.35414 -41.66320 -38.98113 -38.38980 -35.09379 -34.44361 -33.87057 -33.19303 -31.84707 -31.00354 -29.26193 -28.18698 -26.58180 -25.66006 -24.43533 -23.68831 -22.60933 -21.80258 -21.44910 -20.94474 -20.74010 -19.50138 -18.79469 -17.63899 -17.21540 -16.92692 -16.72830 -16.38599 -15.80333 -15.48421 -15.33865 -15.22410 -15.01608 -14.89377 -14.73233 -14.19600 -14.14716 -14.06709 -13.86356 -13.72302 -13.53301 -13.30303 -13.10863 -12.97031 -12.69892 -12.39514 -12.22983 -12.04669 -11.87590 -11.75515 -11.66020 -11.53923 -11.42451 -11.15489 -10.87337 -10.64223 -10.46090 -10.20202 -9.58034 -9.30832 -9.14120 -8.71584 -5.35951 0.33805 1.41571 1.46335 1.51214 1.57491 1.68387 2.29996 2.41710 2.54431 2.90168 3.12829 3.38411 3.64339 3.72225 3.93171 3.95402 4.07769 4.15160 4.15442 4.17545 4.27421 4.34109 4.39903 4.44325 4.55934 4.64317 4.75716 4.78856 4.82001 4.88433 4.95639 5.01130 5.01757 5.04726 5.06411 5.09114 5.12122 5.16685 5.21312 5.29084 5.36579 5.46713 5.52800 5.59115 5.68680 5.89193 6.08402 6.20039 6.32814 6.76356 6.80828 7.11804 7.50173 8.17182 8.77967 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.003703 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.307817 B = 7560.441118 C = 8960.852783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.027 4.027 3 C -0.006 4.006 4 N -0.520 5.520 5 H 0.437 0.563 6 C 0.123 3.877 7 C 0.583 3.417 8 O -0.545 6.545 9 N -0.578 5.578 10 C 0.073 3.927 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.128 4.128 14 C 0.167 3.833 15 H 0.084 0.916 16 C -0.077 4.077 17 H 0.089 0.911 18 C -0.109 4.109 19 C 0.121 3.879 20 N -0.631 5.631 21 C -0.333 4.333 22 H 0.051 0.949 23 C -0.066 4.066 24 N -0.939 5.939 25 Si 1.076 2.924 26 H -0.304 1.304 27 H -0.286 1.286 28 H -0.252 1.252 29 C 0.137 3.863 30 N -0.446 5.446 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.226 0.774 35 H 0.143 0.857 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.016 0.984 47 H 0.251 0.749 48 H 0.032 0.968 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.175 2.894 -3.242 33.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 C -0.145 4.145 4 N -0.122 5.122 5 H 0.277 0.723 6 C -0.136 4.136 7 C 0.370 3.630 8 O -0.424 6.424 9 N -0.310 5.310 10 C -0.048 4.048 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.064 3.936 15 H 0.102 0.898 16 C -0.097 4.097 17 H 0.107 0.893 18 C -0.146 4.146 19 C -0.004 4.004 20 N -0.358 5.358 21 C -0.461 4.461 22 H 0.069 0.931 23 C -0.262 4.262 24 N -0.581 5.581 25 Si 0.902 3.098 26 H -0.232 1.232 27 H -0.213 1.213 28 H -0.177 1.177 29 C 0.012 3.988 30 N -0.171 5.171 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.242 0.758 35 H 0.160 0.840 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -32.129 3.083 -1.935 32.335 hybrid contribution 1.235 -0.069 -1.424 1.886 sum -30.894 3.014 -3.359 31.222 Atomic orbital electron populations 1.20142 0.84882 1.03960 1.03174 1.21650 0.98513 0.88045 1.07801 1.23460 0.81783 1.02631 1.06627 1.43018 1.10378 1.06950 1.51854 0.72284 1.22486 0.93453 0.83154 1.14529 1.16966 0.85657 0.82478 0.77887 1.90891 1.23870 1.76646 1.50989 1.47751 1.10911 1.03997 1.68304 1.22921 0.83143 1.00934 0.97795 1.21904 1.00185 0.97174 0.97272 1.21546 0.93099 0.97729 1.02926 1.21969 0.99493 0.98579 0.96599 1.21251 0.83529 0.89733 0.99125 0.89789 1.22619 0.92043 0.96493 0.98499 0.89329 1.22963 0.93035 1.02314 0.96290 1.21857 0.94298 0.92794 0.91435 1.44967 1.01371 1.46061 1.43418 1.19883 0.82288 1.17605 1.26298 0.93115 1.26755 0.94799 0.96487 1.08157 1.71027 1.30750 1.42521 1.13809 0.83892 0.75132 0.77020 0.73718 1.23180 1.21338 1.17680 1.21817 0.88182 0.94133 0.94674 1.69752 0.99244 1.30774 1.17334 0.90596 0.88843 0.91236 0.75783 0.84011 0.90922 0.92899 0.88415 0.90505 0.90718 0.92734 0.90489 0.88763 0.91637 0.96569 0.96626 0.94029 0.94975 0.95288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.42 71.24 0.74 0.21 16 2 C -0.03 -0.41 7.07 41.75 0.30 -0.11 16 3 C -0.01 -0.07 11.91 83.52 0.99 0.93 16 4 N -0.52 -9.20 6.15 -188.02 -1.16 -10.36 16 5 H 0.44 6.74 8.96 -92.71 -0.83 5.91 16 6 C 0.12 2.89 7.68 136.28 1.05 3.94 16 7 C 0.58 16.65 7.36 86.66 0.64 17.28 16 8 O -0.54 -18.97 10.04 -4.04 -0.04 -19.01 16 9 N -0.58 -14.67 2.97 -798.88 -2.37 -17.04 16 10 C 0.07 1.41 6.10 86.36 0.53 1.94 16 11 C -0.13 -2.05 6.08 30.68 0.19 -1.87 16 12 C -0.12 -1.98 5.88 30.62 0.18 -1.80 16 13 C -0.13 -3.07 4.86 30.67 0.15 -2.92 16 14 C 0.17 4.60 2.57 44.98 0.12 4.72 16 15 H 0.08 2.20 7.87 -2.39 -0.02 2.18 16 16 C -0.08 -2.85 1.91 -9.40 -0.02 -2.87 16 17 H 0.09 3.74 5.95 -5.94 -0.04 3.70 16 18 C -0.11 -4.25 5.56 31.79 0.18 -4.07 16 19 C 0.12 5.93 4.57 86.74 0.40 6.33 16 20 N -0.63 -34.30 3.38 -691.99 -2.34 -36.64 16 21 C -0.33 -20.92 10.39 84.03 0.87 -20.05 16 22 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 23 C -0.07 -4.21 5.42 84.86 0.46 -3.75 16 24 N -0.94 -63.32 13.70 21.65 0.30 -63.03 16 25 Si 1.08 57.11 25.17 68.60 1.73 58.83 16 26 H -0.30 -16.19 7.11 99.48 0.71 -15.48 16 27 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.25 -12.29 5.04 99.48 0.50 -11.79 16 29 C 0.14 6.00 5.35 86.86 0.46 6.47 16 30 N -0.45 -9.26 7.64 -177.64 -1.36 -10.62 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.23 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.14 2.85 4.13 -24.54 -0.10 2.75 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.89 7.19 -2.39 -0.02 1.88 16 43 H 0.09 3.66 5.52 -6.73 -0.04 3.63 16 44 H 0.07 2.30 7.85 -2.39 -0.02 2.28 16 45 H 0.02 0.82 4.94 -2.39 -0.01 0.81 16 46 H 0.02 0.84 6.66 -2.39 -0.02 0.83 16 47 H 0.25 16.91 8.73 -92.71 -0.81 16.10 16 48 H 0.03 1.43 8.13 -2.39 -0.02 1.42 16 49 H 0.03 1.20 7.86 -2.38 -0.02 1.18 16 Total: -1.00 -81.18 364.64 1.74 -79.43 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.24 Total: 14.05 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 7.23 Total: 4.39 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -6.93 Total: -137.69 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.04 Total: -19.01 kcal Atomic # 14 Polarization: 57.11 SS G_CDS: 1.73 Total: 58.83 kcal Total: -81.18 1.74 -79.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039228868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.516 kcal (2) G-P(sol) polarization free energy of solvation -81.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds