Wall clock time and date at job start Tue Mar 31 2020 17:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35564 * 125.82241 * 2 1 4 4 N 1.35399 * 107.16086 * 180.26286 * 3 2 1 5 5 H 0.97003 * 126.44056 * 180.02562 * 4 3 2 6 6 C 1.36663 * 107.12157 * 359.97438 * 4 3 2 7 7 C 1.47409 * 125.86718 * 180.02562 * 6 4 3 8 8 O 1.21604 * 119.99878 * 353.30312 * 7 6 4 9 9 N 1.34772 * 120.00455 * 173.30228 * 7 6 4 10 10 C 1.46930 * 120.62954 * 1.63581 * 9 7 6 11 11 C 1.53189 * 108.77555 * 233.58884 * 10 9 7 12 12 C 1.53045 * 109.31014 * 305.35902 * 11 10 9 13 13 C 1.53041 * 109.53518 * 61.36923 * 12 11 10 14 14 C 1.46927 * 120.63504 * 181.35533 * 9 7 6 15 15 H 1.09000 * 109.58816 * 246.20372 * 14 9 7 16 16 C 1.52999 * 109.58296 * 6.62465 * 14 9 7 17 17 H 1.09001 * 110.88447 * 43.51026 * 16 14 9 18 18 C 1.55150 * 111.00904 * 279.58428 * 16 14 9 19 19 C 1.54315 * 102.94576 * 206.42413 * 18 16 14 20 20 N 1.47020 * 107.26978 * 22.19206 * 19 18 16 21 21 C 1.36943 * 125.64727 * 181.09408 * 20 19 18 22 22 H 1.07997 * 119.99641 * 174.82512 * 21 20 19 23 23 C 1.38811 * 120.00162 * 354.82616 * 21 20 19 24 24 N 1.31625 * 119.99940 * 5.21927 * 23 21 20 25 25 Si 1.86800 * 120.00176 * 185.22265 * 23 21 20 26 26 H 1.48500 * 109.47346 * 94.99457 * 25 23 21 27 27 H 1.48501 * 109.47236 * 214.99699 * 25 23 21 28 28 H 1.48502 * 109.46747 * 334.99751 * 25 23 21 29 29 C 1.47424 * 108.70350 * 1.05951 * 20 19 18 30 30 N 1.31618 * 108.27380 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47037 * 269.71412 * 1 2 3 32 32 H 1.08997 * 109.47012 * 29.72174 * 1 2 3 33 33 H 1.09004 * 109.46399 * 149.71579 * 1 2 3 34 34 H 1.08003 * 126.41742 * 0.22675 * 3 2 1 35 35 H 1.09003 * 109.58719 * 353.37458 * 10 9 7 36 36 H 1.08995 * 109.58767 * 113.65281 * 10 9 7 37 37 H 1.08993 * 109.50279 * 65.31332 * 11 10 9 38 38 H 1.09002 * 109.49784 * 185.38656 * 11 10 9 39 39 H 1.08997 * 109.46064 * 181.38418 * 12 11 10 40 40 H 1.09001 * 109.46604 * 301.34964 * 12 11 10 41 41 H 1.09002 * 109.50167 * 58.58308 * 13 12 11 42 42 H 1.08996 * 109.50048 * 178.64663 * 13 12 11 43 43 H 1.09001 * 110.71919 * 324.79177 * 18 16 14 44 44 H 1.09004 * 110.71864 * 88.05769 * 18 16 14 45 45 H 1.08998 * 109.88673 * 262.77548 * 19 18 16 46 46 H 1.09000 * 110.01605 * 141.68393 * 19 18 16 47 47 H 0.96994 * 119.99816 * 179.97438 * 24 23 21 48 48 H 1.09003 * 110.36341 * 217.02935 * 29 20 19 49 49 H 1.08999 * 110.45869 * 94.76126 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6660 -0.0059 5 1 4.3789 1.2209 -0.0071 6 6 3.5466 -0.7002 -0.0089 7 6 4.7175 -1.5956 -0.0149 8 8 5.8354 -1.1339 -0.1405 9 7 4.5492 -2.9261 0.1188 10 6 3.2026 -3.5023 0.2356 11 6 3.1466 -4.3736 1.4943 12 6 4.2714 -5.4101 1.4428 13 6 5.6244 -4.6957 1.4097 14 6 5.7083 -3.8286 0.1444 15 1 5.6951 -4.4656 -0.7400 16 6 6.9982 -3.0061 0.1684 17 1 6.9147 -2.1727 0.8660 18 6 7.3663 -2.5073 -1.2538 19 6 8.8988 -2.3435 -1.1769 20 7 9.3742 -3.1962 -0.0775 21 6 10.6751 -3.3186 0.3323 22 1 10.9129 -3.9083 1.2053 23 6 11.6880 -2.6849 -0.3743 24 7 11.3904 -1.8840 -1.3755 25 14 13.4735 -2.9689 0.0956 26 1 14.0424 -4.0484 -0.7506 27 1 14.2453 -1.7175 -0.1132 28 1 13.5521 -3.3665 1.5242 29 6 8.2183 -3.8968 0.5111 30 7 2.2861 -1.0791 -0.0054 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 0.8924 -0.5095 33 1 -0.3632 -0.8875 -0.5183 34 1 1.9711 2.1278 0.0034 35 1 2.4677 -2.7010 0.3129 36 1 2.9882 -4.1111 -0.6427 37 1 3.2701 -3.7461 2.3769 38 1 2.1840 -4.8828 1.5417 39 1 4.2187 -6.0473 2.3256 40 1 4.1614 -6.0213 0.5470 41 1 5.7247 -4.0652 2.2931 42 1 6.4257 -5.4345 1.3973 43 1 7.0949 -3.2491 -2.0050 44 1 6.8863 -1.5513 -1.4635 45 1 9.1508 -1.3026 -0.9742 46 1 9.3553 -2.6593 -2.1149 47 1 12.0981 -1.4409 -1.8690 48 1 8.3355 -3.9805 1.5916 49 1 8.1041 -4.8847 0.0650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039228887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:49 Heat of formation + Delta-G solvation = 86.465074 kcal Electronic energy + Delta-G solvation = -30099.728084 eV Core-core repulsion = 26257.886992 eV Total energy + Delta-G solvation = -3841.841092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53873 -40.35603 -37.34011 -36.79699 -33.65698 -33.13876 -32.74676 -31.39560 -30.71167 -28.97998 -27.42775 -27.04751 -25.29064 -24.32900 -23.38407 -22.49252 -21.00978 -20.62462 -19.77932 -19.60543 -19.46909 -17.84912 -16.72504 -16.28183 -15.96391 -15.84332 -14.89332 -14.67401 -14.49653 -14.37472 -14.26994 -13.91822 -13.68495 -13.49161 -13.21122 -13.09231 -12.96150 -12.88676 -12.51042 -12.13309 -11.98902 -11.86556 -11.61455 -11.34210 -11.06023 -10.84086 -10.78451 -10.75461 -10.56339 -10.37849 -10.03170 -9.91734 -9.68685 -9.57491 -9.44394 -9.36367 -8.95074 -8.57744 -8.42308 -8.25885 -6.63231 -5.56696 -2.88777 1.26543 2.35853 2.46678 3.34121 3.35714 3.47484 3.51983 3.54362 4.02230 4.58172 4.63113 4.77763 4.90122 4.92038 4.95161 5.03321 5.16954 5.37079 5.41781 5.43981 5.48833 5.59969 5.62862 5.64382 5.69954 5.74102 5.83212 5.92581 6.01549 6.06152 6.12344 6.14051 6.16348 6.23249 6.34859 6.45969 6.50878 6.62290 6.74239 6.83535 6.97333 6.99975 7.16970 7.34256 7.44521 7.63833 7.74102 7.92347 8.03291 8.31400 8.44159 9.37999 9.99252 10.68264 11.54755 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.003283 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.608349 B = 8526.976097 C = 9827.240840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.007 4.007 3 C -0.029 4.029 4 N -0.522 5.522 5 H 0.433 0.567 6 C 0.167 3.833 7 C 0.581 3.419 8 O -0.500 6.500 9 N -0.578 5.578 10 C 0.057 3.943 11 C -0.130 4.130 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.160 3.840 15 H 0.073 0.927 16 C -0.093 4.093 17 H 0.100 0.900 18 C -0.132 4.132 19 C 0.181 3.819 20 N -0.605 5.605 21 C -0.224 4.224 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.139 3.861 30 N -0.444 5.444 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.157 0.843 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.249 0.751 48 H 0.033 0.967 49 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.521 2.123 3.828 25.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.168 4.168 4 N -0.123 5.123 5 H 0.273 0.727 6 C -0.095 4.095 7 C 0.366 3.634 8 O -0.375 6.375 9 N -0.310 5.310 10 C -0.065 4.065 11 C -0.168 4.168 12 C -0.160 4.160 13 C -0.168 4.168 14 C 0.058 3.942 15 H 0.091 0.909 16 C -0.112 4.112 17 H 0.118 0.882 18 C -0.170 4.170 19 C 0.056 3.944 20 N -0.331 5.331 21 C -0.352 4.352 22 H 0.093 0.907 23 C -0.207 4.207 24 N -0.568 5.568 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.207 1.207 29 C 0.012 3.988 30 N -0.168 5.168 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.173 0.827 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -24.927 1.622 3.689 25.251 hybrid contribution 1.623 0.862 0.153 1.844 sum -23.304 2.484 3.843 23.749 Atomic orbital electron populations 1.20056 0.87149 1.02922 1.02400 1.21012 0.96987 0.88326 1.07607 1.22673 0.83037 1.00945 1.10156 1.42894 1.09305 1.07621 1.52474 0.72728 1.23055 0.93799 0.82439 1.10175 1.16715 0.85407 0.82117 0.79128 1.90984 1.22078 1.76133 1.48280 1.47693 1.08333 1.04503 1.70512 1.23090 0.85122 1.01330 0.96986 1.21869 0.98650 0.97686 0.98585 1.21581 0.94866 0.97707 1.01840 1.22077 0.97494 0.99159 0.98044 1.21521 0.84718 0.90342 0.97636 0.90918 1.22751 0.90799 0.97450 1.00207 0.88249 1.23270 0.99108 1.00446 0.94199 1.21093 0.87163 0.94862 0.91249 1.44493 1.02029 1.49521 1.37081 1.19072 0.81466 1.26287 1.08399 0.90681 1.24811 0.97805 0.99830 0.98245 1.70023 1.30460 1.32892 1.23391 0.86143 0.85226 0.77068 0.77631 1.21769 1.21891 1.20743 1.21629 0.87586 0.93666 0.95916 1.69545 0.99579 1.29142 1.18525 0.91247 0.91193 0.90952 0.79902 0.82698 0.92215 0.91987 0.91188 0.92021 0.91945 0.91507 0.90127 0.94386 0.89619 0.94368 0.94440 0.94014 0.94923 0.97015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.42 36.01 0.38 -0.04 16 2 C -0.01 -0.07 7.07 -82.99 -0.59 -0.65 16 3 C -0.03 -0.24 11.91 -16.93 -0.20 -0.44 16 4 N -0.52 -5.37 6.15 -10.78 -0.07 -5.44 16 5 H 0.43 3.85 8.96 -40.82 -0.37 3.49 16 6 C 0.17 2.18 7.73 -154.52 -1.19 0.99 16 7 C 0.58 8.98 7.46 -12.53 -0.09 8.89 16 8 O -0.50 -9.15 9.92 5.27 0.05 -9.10 16 9 N -0.58 -8.25 2.97 -166.23 -0.49 -8.74 16 10 C 0.06 0.66 6.27 -3.71 -0.02 0.64 16 11 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 12 C -0.12 -1.30 5.88 -26.69 -0.16 -1.46 16 13 C -0.13 -1.72 4.83 -26.39 -0.13 -1.85 16 14 C 0.16 2.48 2.63 -67.38 -0.18 2.30 16 15 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 16 C -0.09 -1.82 1.93 -88.48 -0.17 -1.99 16 17 H 0.10 2.14 6.01 -51.92 -0.31 1.83 16 18 C -0.13 -2.88 5.64 -24.90 -0.14 -3.02 16 19 C 0.18 4.88 5.38 -3.07 -0.02 4.86 16 20 N -0.61 -16.75 3.39 -170.08 -0.58 -17.33 16 21 C -0.22 -6.63 10.27 -15.06 -0.15 -6.79 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.33 5.48 -17.43 -0.10 -0.42 16 24 N -0.92 -28.66 10.34 55.49 0.57 -28.08 16 25 Si 0.91 23.14 29.56 -169.99 -5.02 18.11 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 29 C 0.14 3.10 5.33 -2.53 -0.01 3.08 16 30 N -0.44 -5.28 7.52 -7.50 -0.06 -5.34 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.16 1.83 3.73 -79.51 -0.30 1.54 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.08 7.08 -51.93 -0.37 0.72 16 43 H 0.04 0.79 7.81 -51.93 -0.41 0.38 16 44 H 0.09 1.87 5.42 -52.90 -0.29 1.58 16 45 H 0.04 1.14 7.53 -51.93 -0.39 0.75 16 46 H 0.04 1.11 7.36 -51.93 -0.38 0.72 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 49 H 0.01 0.26 7.73 -51.93 -0.40 -0.14 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -34.97 370.56 -10.76 -45.73 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.81 Total: 1.98 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.94 Total: 2.63 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.62 Total: -64.94 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.05 Total: -9.10 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.97 -10.76 -45.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039228887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.195 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds