Wall clock time and date at job start Tue Mar 31 2020 17:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35564 * 125.82241 * 2 1 4 4 N 1.35399 * 107.16086 * 180.26286 * 3 2 1 5 5 H 0.97003 * 126.44056 * 180.02562 * 4 3 2 6 6 C 1.36663 * 107.12157 * 359.97438 * 4 3 2 7 7 C 1.47409 * 125.86718 * 180.02562 * 6 4 3 8 8 O 1.21604 * 119.99878 * 353.30312 * 7 6 4 9 9 N 1.34772 * 120.00455 * 173.30228 * 7 6 4 10 10 C 1.46930 * 120.62954 * 1.63581 * 9 7 6 11 11 C 1.53189 * 108.77555 * 233.58884 * 10 9 7 12 12 C 1.53045 * 109.31014 * 305.35902 * 11 10 9 13 13 C 1.53041 * 109.53518 * 61.36923 * 12 11 10 14 14 C 1.46927 * 120.63504 * 181.35533 * 9 7 6 15 15 H 1.09000 * 109.58816 * 246.20372 * 14 9 7 16 16 C 1.52999 * 109.58296 * 6.62465 * 14 9 7 17 17 H 1.09001 * 110.88447 * 43.51026 * 16 14 9 18 18 C 1.55150 * 111.00904 * 279.58428 * 16 14 9 19 19 C 1.54315 * 102.94576 * 206.42413 * 18 16 14 20 20 N 1.47020 * 107.26978 * 22.19206 * 19 18 16 21 21 C 1.36943 * 125.64727 * 181.09408 * 20 19 18 22 22 H 1.07997 * 119.99641 * 174.82512 * 21 20 19 23 23 C 1.38811 * 120.00162 * 354.82616 * 21 20 19 24 24 N 1.31625 * 119.99940 * 5.21927 * 23 21 20 25 25 Si 1.86800 * 120.00176 * 185.22265 * 23 21 20 26 26 H 1.48500 * 109.47346 * 94.99457 * 25 23 21 27 27 H 1.48501 * 109.47236 * 214.99699 * 25 23 21 28 28 H 1.48502 * 109.46747 * 334.99751 * 25 23 21 29 29 C 1.47424 * 108.70350 * 1.05951 * 20 19 18 30 30 N 1.31618 * 108.27380 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.47037 * 269.71412 * 1 2 3 32 32 H 1.08997 * 109.47012 * 29.72174 * 1 2 3 33 33 H 1.09004 * 109.46399 * 149.71579 * 1 2 3 34 34 H 1.08003 * 126.41742 * 0.22675 * 3 2 1 35 35 H 1.09003 * 109.58719 * 353.37458 * 10 9 7 36 36 H 1.08995 * 109.58767 * 113.65281 * 10 9 7 37 37 H 1.08993 * 109.50279 * 65.31332 * 11 10 9 38 38 H 1.09002 * 109.49784 * 185.38656 * 11 10 9 39 39 H 1.08997 * 109.46064 * 181.38418 * 12 11 10 40 40 H 1.09001 * 109.46604 * 301.34964 * 12 11 10 41 41 H 1.09002 * 109.50167 * 58.58308 * 13 12 11 42 42 H 1.08996 * 109.50048 * 178.64663 * 13 12 11 43 43 H 1.09001 * 110.71919 * 324.79177 * 18 16 14 44 44 H 1.09004 * 110.71864 * 88.05769 * 18 16 14 45 45 H 1.08998 * 109.88673 * 262.77548 * 19 18 16 46 46 H 1.09000 * 110.01605 * 141.68393 * 19 18 16 47 47 H 0.96994 * 119.99816 * 179.97438 * 24 23 21 48 48 H 1.09003 * 110.36341 * 217.02935 * 29 20 19 49 49 H 1.08999 * 110.45869 * 94.76126 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6660 -0.0059 5 1 4.3789 1.2209 -0.0071 6 6 3.5466 -0.7002 -0.0089 7 6 4.7175 -1.5956 -0.0149 8 8 5.8354 -1.1339 -0.1405 9 7 4.5492 -2.9261 0.1188 10 6 3.2026 -3.5023 0.2356 11 6 3.1466 -4.3736 1.4943 12 6 4.2714 -5.4101 1.4428 13 6 5.6244 -4.6957 1.4097 14 6 5.7083 -3.8286 0.1444 15 1 5.6951 -4.4656 -0.7400 16 6 6.9982 -3.0061 0.1684 17 1 6.9147 -2.1727 0.8660 18 6 7.3663 -2.5073 -1.2538 19 6 8.8988 -2.3435 -1.1769 20 7 9.3742 -3.1962 -0.0775 21 6 10.6751 -3.3186 0.3323 22 1 10.9129 -3.9083 1.2053 23 6 11.6880 -2.6849 -0.3743 24 7 11.3904 -1.8840 -1.3755 25 14 13.4735 -2.9689 0.0956 26 1 14.0424 -4.0484 -0.7506 27 1 14.2453 -1.7175 -0.1132 28 1 13.5521 -3.3665 1.5242 29 6 8.2183 -3.8968 0.5111 30 7 2.2861 -1.0791 -0.0054 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 0.8924 -0.5095 33 1 -0.3632 -0.8875 -0.5183 34 1 1.9711 2.1278 0.0034 35 1 2.4677 -2.7010 0.3129 36 1 2.9882 -4.1111 -0.6427 37 1 3.2701 -3.7461 2.3769 38 1 2.1840 -4.8828 1.5417 39 1 4.2187 -6.0473 2.3256 40 1 4.1614 -6.0213 0.5470 41 1 5.7247 -4.0652 2.2931 42 1 6.4257 -5.4345 1.3973 43 1 7.0949 -3.2491 -2.0050 44 1 6.8863 -1.5513 -1.4635 45 1 9.1508 -1.3026 -0.9742 46 1 9.3553 -2.6593 -2.1149 47 1 12.0981 -1.4409 -1.8690 48 1 8.3355 -3.9805 1.5916 49 1 8.1041 -4.8847 0.0650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039228887.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:49 Heat of formation + Delta-G solvation = 64.430895 kcal Electronic energy + Delta-G solvation = -30100.683557 eV Core-core repulsion = 26257.886992 eV Total energy + Delta-G solvation = -3842.796566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.35568 -41.57457 -38.76458 -38.30444 -34.94926 -34.41158 -33.81582 -32.79742 -31.76707 -30.88472 -28.74469 -28.16639 -26.77069 -25.84750 -24.49360 -23.67982 -22.20637 -21.79840 -21.25439 -20.88832 -20.70997 -18.87228 -18.76498 -17.48195 -17.14206 -16.81387 -16.61480 -16.26518 -15.69492 -15.66719 -15.19798 -15.06615 -14.99165 -14.71093 -14.26014 -14.18119 -13.93431 -13.89304 -13.68546 -13.62993 -13.50569 -13.27623 -12.99716 -12.85307 -12.76222 -12.35346 -12.20966 -12.00931 -11.97626 -11.75600 -11.71196 -11.49916 -11.29921 -11.18039 -11.12666 -10.73225 -10.46958 -10.14724 -9.53973 -9.29390 -8.87516 -7.84693 -5.20972 0.35640 1.42045 1.45833 1.53633 1.54784 1.59067 2.32432 2.43469 2.49846 3.14016 3.31965 3.58348 3.71008 3.88933 3.96784 4.05719 4.15538 4.17622 4.23152 4.28851 4.36887 4.39674 4.48485 4.60888 4.68406 4.74645 4.82556 4.89683 4.95076 5.00121 5.01681 5.04453 5.07915 5.10903 5.14160 5.19790 5.23431 5.25604 5.38796 5.45088 5.48859 5.55127 5.68561 5.75748 5.79043 5.96693 6.19242 6.22237 6.37021 6.78635 7.09075 7.17743 7.78048 8.45801 9.26203 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.003283 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.608349 B = 8526.976097 C = 9827.240840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.026 4.026 3 C -0.006 4.006 4 N -0.520 5.520 5 H 0.436 0.564 6 C 0.126 3.874 7 C 0.577 3.423 8 O -0.544 6.544 9 N -0.578 5.578 10 C 0.055 3.945 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.077 0.923 16 C -0.071 4.071 17 H 0.079 0.921 18 C -0.116 4.116 19 C 0.194 3.806 20 N -0.628 5.628 21 C -0.243 4.243 22 H 0.084 0.916 23 C -0.073 4.073 24 N -0.954 5.954 25 Si 0.983 3.017 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.265 1.265 29 C 0.136 3.864 30 N -0.446 5.446 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.159 0.841 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.087 0.913 45 H -0.005 1.005 46 H 0.001 0.999 47 H 0.245 0.755 48 H 0.038 0.962 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.272 1.491 4.958 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.159 4.159 3 C -0.146 4.146 4 N -0.121 5.121 5 H 0.277 0.723 6 C -0.133 4.133 7 C 0.364 3.636 8 O -0.423 6.423 9 N -0.309 5.309 10 C -0.066 4.066 11 C -0.162 4.162 12 C -0.154 4.154 13 C -0.164 4.164 14 C 0.062 3.938 15 H 0.094 0.906 16 C -0.090 4.090 17 H 0.097 0.903 18 C -0.154 4.154 19 C 0.069 3.931 20 N -0.355 5.355 21 C -0.372 4.372 22 H 0.102 0.898 23 C -0.265 4.265 24 N -0.603 5.603 25 Si 0.811 3.189 26 H -0.212 1.212 27 H -0.221 1.221 28 H -0.190 1.190 29 C 0.011 3.989 30 N -0.171 5.171 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.243 0.757 35 H 0.174 0.826 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.013 0.987 46 H 0.019 0.981 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -27.722 0.936 4.848 28.158 hybrid contribution 2.341 1.155 -0.190 2.618 sum -25.381 2.092 4.658 25.889 Atomic orbital electron populations 1.20155 0.84735 1.03941 1.03320 1.21688 0.98566 0.87998 1.07643 1.23462 0.81695 1.02652 1.06745 1.43014 1.10440 1.06914 1.51777 0.72303 1.22498 0.93375 0.83197 1.14249 1.17057 0.85765 0.82644 0.78133 1.90933 1.23888 1.76831 1.50624 1.47789 1.08949 1.04209 1.69939 1.23277 0.83494 1.01718 0.98158 1.21847 0.99826 0.97272 0.97231 1.21560 0.92942 0.97724 1.03151 1.22036 0.99536 0.98680 0.96131 1.21346 0.83212 0.90039 0.99183 0.90560 1.22474 0.92098 0.96615 0.97816 0.90255 1.23110 0.95006 1.01154 0.96130 1.20790 0.90462 0.92244 0.89613 1.44841 1.02988 1.50106 1.37516 1.19530 0.82740 1.26179 1.08761 0.89848 1.25785 1.02566 0.99718 0.98450 1.70275 1.31506 1.33873 1.24632 0.84985 0.79134 0.76662 0.78110 1.21174 1.22114 1.18963 1.21824 0.86963 0.94156 0.95965 1.69451 0.99279 1.30401 1.17942 0.90284 0.88860 0.91317 0.75690 0.82554 0.91454 0.92823 0.88541 0.90262 0.91022 0.92469 0.90247 0.93376 0.89509 0.98704 0.98084 0.94564 0.94334 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.42 71.24 0.74 0.16 16 2 C -0.03 -0.43 7.07 41.75 0.30 -0.13 16 3 C -0.01 -0.08 11.91 83.52 0.99 0.91 16 4 N -0.52 -10.24 6.15 -188.02 -1.16 -11.39 16 5 H 0.44 7.72 8.96 -92.71 -0.83 6.89 16 6 C 0.13 3.25 7.73 136.28 1.05 4.30 16 7 C 0.58 18.20 7.46 86.66 0.65 18.84 16 8 O -0.54 -20.95 9.92 -4.04 -0.04 -20.99 16 9 N -0.58 -16.27 2.97 -798.09 -2.37 -18.63 16 10 C 0.05 1.18 6.27 86.36 0.54 1.72 16 11 C -0.12 -2.19 6.08 30.67 0.19 -2.00 16 12 C -0.12 -2.15 5.88 30.62 0.18 -1.97 16 13 C -0.13 -3.17 4.83 30.82 0.15 -3.02 16 14 C 0.17 5.04 2.63 45.12 0.12 5.16 16 15 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 16 C -0.07 -2.84 1.93 -9.41 -0.02 -2.86 16 17 H 0.08 3.58 6.01 -2.67 -0.02 3.56 16 18 C -0.12 -5.28 5.64 31.78 0.18 -5.10 16 19 C 0.19 11.14 5.38 86.73 0.47 11.60 16 20 N -0.63 -36.15 3.39 -692.02 -2.35 -38.50 16 21 C -0.24 -14.80 10.27 84.03 0.86 -13.94 16 22 H 0.08 4.80 7.83 -2.91 -0.02 4.77 16 23 C -0.07 -4.46 5.48 84.86 0.47 -4.00 16 24 N -0.95 -62.23 10.34 21.65 0.22 -62.01 16 25 Si 0.98 48.60 29.56 68.60 2.03 50.63 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.14 6.19 5.33 86.85 0.46 6.65 16 30 N -0.45 -9.99 7.52 -177.63 -1.34 -11.33 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.23 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.16 3.46 3.73 -56.85 -0.21 3.25 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.02 7.08 -2.39 -0.02 2.00 16 43 H 0.05 2.05 7.81 -2.39 -0.02 2.03 16 44 H 0.09 4.00 5.42 -18.12 -0.10 3.90 16 45 H -0.01 -0.35 7.53 -2.39 -0.02 -0.36 16 46 H 0.00 0.06 7.36 -2.39 -0.02 0.04 16 47 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 48 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 49 H 0.03 1.11 7.73 -2.39 -0.02 1.09 16 Total: -1.00 -80.61 370.56 2.17 -78.44 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.16 Total: 17.46 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 7.33 Total: 16.33 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -6.98 Total: -141.86 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -20.99 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -80.61 2.17 -78.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039228887.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.868 kcal (2) G-P(sol) polarization free energy of solvation -80.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds