Wall clock time and date at job start Tue Mar 31 2020 17:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35562 * 125.82723 * 2 1 4 4 N 1.35398 * 107.16439 * 180.25900 * 3 2 1 5 5 H 0.97000 * 126.44235 * 179.75580 * 4 3 2 6 6 C 1.36668 * 107.11841 * 359.61997 * 4 3 2 7 7 C 1.47410 * 125.86180 * 180.10958 * 6 4 3 8 8 O 1.21601 * 120.00291 * 6.33640 * 7 6 4 9 9 N 1.34773 * 119.99803 * 186.33769 * 7 6 4 10 10 C 1.44544 * 118.71141 * 5.74388 * 9 7 6 11 11 C 1.54766 * 109.61105 * 270.61541 * 10 9 7 12 12 C 1.47069 * 110.51732 * 288.35816 * 11 10 9 13 13 C 1.52813 * 114.31827 * 62.90740 * 12 11 10 14 14 C 1.50724 * 109.28077 * 275.69181 * 13 12 11 15 15 C 1.53992 * 110.87895 * 213.00185 * 14 13 12 16 16 C 1.54471 * 104.82042 * 120.04025 * 15 14 13 17 17 N 1.48180 * 104.62013 * 23.87738 * 16 15 14 18 18 C 1.36936 * 127.80239 * 140.66796 * 17 16 15 19 19 H 1.08008 * 119.99738 * 197.33265 * 18 17 16 20 20 C 1.38812 * 120.00531 * 17.32783 * 18 17 16 21 21 N 1.31622 * 119.99480 * 357.15701 * 20 18 17 22 22 Si 1.86787 * 120.00250 * 177.15879 * 20 18 17 23 23 H 1.48500 * 109.47502 * 59.99919 * 22 20 18 24 24 H 1.48500 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47191 * 299.99943 * 22 20 18 26 26 C 1.48244 * 104.39275 * 320.64224 * 17 16 15 27 27 C 1.47652 * 118.70663 * 185.47531 * 9 7 6 28 28 N 1.31615 * 108.27184 * 0.38623 * 6 4 3 29 29 H 1.09002 * 109.47046 * 90.00355 * 1 2 3 30 30 H 1.09004 * 109.47199 * 209.99996 * 1 2 3 31 31 H 1.08996 * 109.47525 * 329.99880 * 1 2 3 32 32 H 1.08006 * 126.41173 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.44829 * 30.65008 * 10 9 7 34 34 H 1.09004 * 109.45310 * 150.57009 * 10 9 7 35 35 H 1.08998 * 109.26485 * 48.62770 * 11 10 9 36 36 H 1.08999 * 109.26701 * 168.09599 * 11 10 9 37 37 H 1.09006 * 108.51467 * 184.15698 * 12 11 10 38 38 H 1.08994 * 108.52028 * 301.81351 * 12 11 10 39 39 H 1.08994 * 109.50459 * 35.64175 * 13 12 11 40 40 H 1.09005 * 109.50154 * 155.75382 * 13 12 11 41 41 H 1.09005 * 110.36899 * 238.87549 * 15 14 13 42 42 H 1.08994 * 110.36973 * 1.20441 * 15 14 13 43 43 H 1.09000 * 110.40295 * 142.65786 * 16 15 14 44 44 H 1.09001 * 110.40748 * 265.08954 * 16 15 14 45 45 H 0.97001 * 119.99831 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.41470 * 280.41658 * 26 17 16 47 47 H 1.09005 * 110.41227 * 157.95771 * 26 17 16 48 48 H 1.08994 * 108.96710 * 258.68692 * 27 9 7 49 49 H 1.08997 * 108.96598 * 17.37044 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6659 -0.0058 5 1 4.3788 1.2208 -0.0106 6 6 3.5465 -0.7003 -0.0007 7 6 4.7174 -1.5958 -0.0019 8 8 5.8366 -1.1333 0.1083 9 7 4.5475 -2.9270 -0.1252 10 6 3.2192 -3.4369 -0.3802 11 6 2.5002 -3.7082 0.9631 12 6 3.0799 -4.8840 1.6298 13 6 4.5494 -4.7264 2.0180 14 6 5.4165 -5.0664 0.8330 15 6 6.7385 -5.7123 1.2875 16 6 6.7448 -7.1077 0.6250 17 7 5.8515 -6.9683 -0.5491 18 6 6.0165 -7.5057 -1.7978 19 1 5.4568 -7.1119 -2.6334 20 6 6.9032 -8.5563 -1.9897 21 7 7.6265 -8.9991 -0.9832 22 14 7.0698 -9.3416 -3.6763 23 1 7.5091 -8.3176 -4.6580 24 1 8.0740 -10.4339 -3.6167 25 1 5.7582 -9.8981 -4.0950 26 6 4.7386 -6.1163 -0.0663 27 6 5.7265 -3.8071 -0.0003 28 7 2.2860 -1.0792 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9710 2.1277 -0.0004 33 1 2.6526 -2.7029 -0.9533 34 1 3.2894 -4.3646 -0.9482 35 1 2.6076 -2.8381 1.6107 36 1 1.4416 -3.8872 0.7747 37 1 2.5036 -5.0895 2.5320 38 1 2.9908 -5.7401 0.9611 39 1 4.7369 -3.6969 2.3228 40 1 4.7818 -5.3990 2.8438 41 1 7.5875 -5.1235 0.9401 42 1 6.7606 -5.8076 2.3730 43 1 7.7529 -7.3724 0.3061 44 1 6.3538 -7.8570 1.3133 45 1 8.2464 -9.7330 -1.1174 46 1 4.0284 -6.7091 0.5102 47 1 4.2387 -5.6323 -0.9054 48 1 6.0510 -4.1080 -0.9964 49 1 6.5326 -3.2532 0.4809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045972552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:04 Heat of formation + Delta-G solvation = 73.850712 kcal Electronic energy + Delta-G solvation = -30415.348763 eV Core-core repulsion = 26572.960671 eV Total energy + Delta-G solvation = -3842.388092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.52467 -40.32080 -38.38276 -36.04278 -33.82718 -33.31407 -32.86128 -31.48419 -30.46765 -28.58488 -27.64053 -26.74805 -25.79592 -24.89883 -23.76273 -22.31124 -21.43076 -20.49468 -19.99728 -19.59232 -18.10514 -17.73894 -16.91997 -16.47242 -15.98511 -15.87331 -15.09346 -14.95123 -14.61247 -14.28406 -14.08083 -13.77471 -13.59578 -13.50132 -13.37212 -13.05766 -12.87869 -12.71685 -12.46944 -12.26021 -11.95078 -11.57775 -11.47722 -11.13470 -10.90142 -10.76950 -10.75542 -10.59569 -10.44226 -10.28872 -10.21745 -10.05400 -9.87190 -9.70974 -9.60749 -9.47403 -9.45232 -8.70274 -8.58698 -8.34487 -6.74886 -5.71460 -3.09418 1.23444 2.38403 2.47431 3.30272 3.38549 3.41585 3.46229 3.46988 4.07537 4.50638 4.62699 4.80352 4.96405 5.03449 5.12844 5.19550 5.33294 5.44576 5.46725 5.48588 5.53584 5.58709 5.68865 5.72382 5.72820 5.88888 5.96610 6.00333 6.04546 6.13457 6.27223 6.31561 6.32937 6.37668 6.42438 6.47176 6.58405 6.65546 6.65764 6.79936 6.85216 6.93344 6.95870 7.02087 7.43215 7.46784 7.64471 7.66105 7.81708 8.14013 8.33305 9.18247 9.80536 10.58787 11.39469 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003227 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.018725 B = 8674.839956 C = 8810.198994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.007 4.007 3 C -0.030 4.030 4 N -0.526 5.526 5 H 0.429 0.571 6 C 0.156 3.844 7 C 0.592 3.408 8 O -0.551 6.551 9 N -0.568 5.568 10 C 0.095 3.905 11 C -0.108 4.108 12 C -0.142 4.142 13 C -0.094 4.094 14 C -0.082 4.082 15 C -0.133 4.133 16 C 0.151 3.849 17 N -0.597 5.597 18 C -0.224 4.224 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.131 3.869 27 C 0.131 3.869 28 N -0.427 5.427 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.183 0.817 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.033 0.967 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 19.131 4.943 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 C -0.169 4.169 4 N -0.127 5.127 5 H 0.268 0.732 6 C -0.105 4.105 7 C 0.377 3.623 8 O -0.429 6.429 9 N -0.297 5.297 10 C -0.028 4.028 11 C -0.146 4.146 12 C -0.180 4.180 13 C -0.131 4.131 14 C -0.085 4.085 15 C -0.172 4.172 16 C 0.026 3.974 17 N -0.321 5.321 18 C -0.352 4.352 19 H 0.091 0.909 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.006 3.994 27 C 0.011 3.989 28 N -0.151 5.151 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.396 18.261 4.832 22.593 hybrid contribution 0.685 0.757 -0.753 1.268 sum -11.711 19.018 4.079 22.704 Atomic orbital electron populations 1.20042 0.87160 1.02876 1.02394 1.21028 0.97069 0.88316 1.07674 1.22685 0.83099 1.00948 1.10123 1.42902 1.09117 1.07647 1.53080 0.73180 1.22763 0.93964 0.82103 1.11651 1.16689 0.85349 0.82367 0.77887 1.90814 1.24032 1.75840 1.52229 1.47509 1.10306 1.04480 1.67452 1.22185 0.81424 1.01111 0.98094 1.20909 0.99093 0.98009 0.96631 1.20864 0.95896 1.00220 1.00976 1.21083 0.94370 1.00717 0.96977 1.21472 0.97177 0.94525 0.95289 1.22872 0.95036 1.00217 0.99098 1.21709 0.98369 0.90034 0.87325 1.44993 1.20224 1.58305 1.08566 1.18922 1.21945 1.10395 0.83932 0.90862 1.24920 1.00048 0.97614 0.97551 1.69825 1.27804 1.29020 1.29626 0.86243 0.77366 0.78963 0.83460 1.21138 1.21626 1.21109 1.22135 0.91130 0.91455 0.94727 1.22253 0.85483 0.89781 1.01403 1.70496 0.99076 1.29513 1.15986 0.91269 0.90850 0.91349 0.80022 0.87938 0.89958 0.92232 0.91419 0.93185 0.90025 0.92885 0.91980 0.92458 0.92531 0.88607 0.96687 0.93617 0.94945 0.93239 0.90585 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.00 0.38 -0.07 16 2 C -0.01 -0.07 7.07 -83.00 -0.59 -0.66 16 3 C -0.03 -0.24 11.91 -16.93 -0.20 -0.44 16 4 N -0.53 -5.19 6.15 -10.78 -0.07 -5.25 16 5 H 0.43 3.40 8.96 -40.82 -0.37 3.03 16 6 C 0.16 2.05 7.45 -154.52 -1.15 0.90 16 7 C 0.59 9.32 7.61 -12.53 -0.10 9.22 16 8 O -0.55 -9.91 16.42 5.28 0.09 -9.83 16 9 N -0.57 -8.84 2.27 -173.73 -0.39 -9.24 16 10 C 0.09 1.32 4.88 -4.16 -0.02 1.30 16 11 C -0.11 -1.39 4.88 -28.65 -0.14 -1.53 16 12 C -0.14 -1.96 4.95 -29.67 -0.15 -2.11 16 13 C -0.09 -1.43 4.88 -27.97 -0.14 -1.56 16 14 C -0.08 -1.44 0.68 -154.02 -0.10 -1.55 16 15 C -0.13 -2.54 6.21 -25.44 -0.16 -2.70 16 16 C 0.15 3.62 5.99 -2.35 -0.01 3.61 16 17 N -0.60 -14.95 3.39 -168.96 -0.57 -15.53 16 18 C -0.22 -6.15 10.36 -15.06 -0.16 -6.31 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.73 10.57 55.49 0.59 -26.15 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.13 2.64 4.43 -2.58 -0.01 2.63 16 27 C 0.13 2.29 4.68 -2.81 -0.01 2.28 16 28 N -0.43 -5.24 6.29 -7.50 -0.05 -5.29 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.10 1.40 5.40 -51.93 -0.28 1.12 16 34 H 0.08 1.22 5.15 -51.93 -0.27 0.96 16 35 H 0.06 0.82 7.22 -51.93 -0.37 0.45 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.22 4.59 -51.93 -0.24 0.98 16 39 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 40 H 0.06 0.93 7.42 -51.93 -0.39 0.55 16 41 H 0.06 1.09 7.49 -51.93 -0.39 0.70 16 42 H 0.06 0.97 7.34 -51.93 -0.38 0.59 16 43 H 0.10 2.59 6.22 -51.93 -0.32 2.26 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.03 0.67 5.96 -51.93 -0.31 0.36 16 47 H 0.05 0.97 5.12 -51.93 -0.27 0.70 16 48 H 0.08 1.48 7.96 -51.93 -0.41 1.07 16 49 H 0.08 1.50 6.70 -51.93 -0.35 1.15 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -32.06 364.00 -9.84 -41.91 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.24 Total: 4.12 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.66 Total: 2.80 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.49 Total: -61.45 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.06 -9.84 -41.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045972552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.756 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds