Wall clock time and date at job start Tue Mar 31 2020 17:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35562 * 125.82723 * 2 1 4 4 N 1.35398 * 107.16439 * 180.25900 * 3 2 1 5 5 H 0.97000 * 126.44235 * 179.75580 * 4 3 2 6 6 C 1.36668 * 107.11841 * 359.61997 * 4 3 2 7 7 C 1.47410 * 125.86180 * 180.10958 * 6 4 3 8 8 O 1.21601 * 120.00291 * 6.33640 * 7 6 4 9 9 N 1.34773 * 119.99803 * 186.33769 * 7 6 4 10 10 C 1.44544 * 118.71141 * 5.74388 * 9 7 6 11 11 C 1.54766 * 109.61105 * 270.61541 * 10 9 7 12 12 C 1.47069 * 110.51732 * 288.35816 * 11 10 9 13 13 C 1.52813 * 114.31827 * 62.90740 * 12 11 10 14 14 C 1.50724 * 109.28077 * 275.69181 * 13 12 11 15 15 C 1.53992 * 110.87895 * 213.00185 * 14 13 12 16 16 C 1.54471 * 104.82042 * 120.04025 * 15 14 13 17 17 N 1.48180 * 104.62013 * 23.87738 * 16 15 14 18 18 C 1.36936 * 127.80239 * 140.66796 * 17 16 15 19 19 H 1.08008 * 119.99738 * 197.33265 * 18 17 16 20 20 C 1.38812 * 120.00531 * 17.32783 * 18 17 16 21 21 N 1.31622 * 119.99480 * 357.15701 * 20 18 17 22 22 Si 1.86787 * 120.00250 * 177.15879 * 20 18 17 23 23 H 1.48500 * 109.47502 * 59.99919 * 22 20 18 24 24 H 1.48500 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47191 * 299.99943 * 22 20 18 26 26 C 1.48244 * 104.39275 * 320.64224 * 17 16 15 27 27 C 1.47652 * 118.70663 * 185.47531 * 9 7 6 28 28 N 1.31615 * 108.27184 * 0.38623 * 6 4 3 29 29 H 1.09002 * 109.47046 * 90.00355 * 1 2 3 30 30 H 1.09004 * 109.47199 * 209.99996 * 1 2 3 31 31 H 1.08996 * 109.47525 * 329.99880 * 1 2 3 32 32 H 1.08006 * 126.41173 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.44829 * 30.65008 * 10 9 7 34 34 H 1.09004 * 109.45310 * 150.57009 * 10 9 7 35 35 H 1.08998 * 109.26485 * 48.62770 * 11 10 9 36 36 H 1.08999 * 109.26701 * 168.09599 * 11 10 9 37 37 H 1.09006 * 108.51467 * 184.15698 * 12 11 10 38 38 H 1.08994 * 108.52028 * 301.81351 * 12 11 10 39 39 H 1.08994 * 109.50459 * 35.64175 * 13 12 11 40 40 H 1.09005 * 109.50154 * 155.75382 * 13 12 11 41 41 H 1.09005 * 110.36899 * 238.87549 * 15 14 13 42 42 H 1.08994 * 110.36973 * 1.20441 * 15 14 13 43 43 H 1.09000 * 110.40295 * 142.65786 * 16 15 14 44 44 H 1.09001 * 110.40748 * 265.08954 * 16 15 14 45 45 H 0.97001 * 119.99831 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.41470 * 280.41658 * 26 17 16 47 47 H 1.09005 * 110.41227 * 157.95771 * 26 17 16 48 48 H 1.08994 * 108.96710 * 258.68692 * 27 9 7 49 49 H 1.08997 * 108.96598 * 17.37044 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6659 -0.0058 5 1 4.3788 1.2208 -0.0106 6 6 3.5465 -0.7003 -0.0007 7 6 4.7174 -1.5958 -0.0019 8 8 5.8366 -1.1333 0.1083 9 7 4.5475 -2.9270 -0.1252 10 6 3.2192 -3.4369 -0.3802 11 6 2.5002 -3.7082 0.9631 12 6 3.0799 -4.8840 1.6298 13 6 4.5494 -4.7264 2.0180 14 6 5.4165 -5.0664 0.8330 15 6 6.7385 -5.7123 1.2875 16 6 6.7448 -7.1077 0.6250 17 7 5.8515 -6.9683 -0.5491 18 6 6.0165 -7.5057 -1.7978 19 1 5.4568 -7.1119 -2.6334 20 6 6.9032 -8.5563 -1.9897 21 7 7.6265 -8.9991 -0.9832 22 14 7.0698 -9.3416 -3.6763 23 1 7.5091 -8.3176 -4.6580 24 1 8.0740 -10.4339 -3.6167 25 1 5.7582 -9.8981 -4.0950 26 6 4.7386 -6.1163 -0.0663 27 6 5.7265 -3.8071 -0.0003 28 7 2.2860 -1.0792 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9710 2.1277 -0.0004 33 1 2.6526 -2.7029 -0.9533 34 1 3.2894 -4.3646 -0.9482 35 1 2.6076 -2.8381 1.6107 36 1 1.4416 -3.8872 0.7747 37 1 2.5036 -5.0895 2.5320 38 1 2.9908 -5.7401 0.9611 39 1 4.7369 -3.6969 2.3228 40 1 4.7818 -5.3990 2.8438 41 1 7.5875 -5.1235 0.9401 42 1 6.7606 -5.8076 2.3730 43 1 7.7529 -7.3724 0.3061 44 1 6.3538 -7.8570 1.3133 45 1 8.2464 -9.7330 -1.1174 46 1 4.0284 -6.7091 0.5102 47 1 4.2387 -5.6323 -0.9054 48 1 6.0510 -4.1080 -0.9964 49 1 6.5326 -3.2532 0.4809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045972552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:03 Heat of formation + Delta-G solvation = 55.169951 kcal Electronic energy + Delta-G solvation = -30416.158822 eV Core-core repulsion = 26572.960671 eV Total energy + Delta-G solvation = -3843.198150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.34074 -41.62333 -39.75604 -37.50298 -35.24128 -34.41772 -34.11911 -32.68539 -31.89992 -30.26461 -28.63089 -28.03949 -27.21401 -26.38512 -24.95438 -23.73050 -22.77847 -21.58113 -21.22811 -20.65047 -19.49842 -18.83295 -18.77802 -17.61227 -17.29148 -16.97682 -16.68847 -16.22001 -16.11905 -15.60927 -15.08272 -14.98880 -14.96382 -14.94596 -14.53519 -14.31469 -13.85578 -13.65902 -13.52907 -13.43072 -13.18476 -13.09580 -12.96638 -12.81458 -12.64887 -12.50162 -12.12818 -12.07471 -11.97508 -11.86766 -11.57794 -11.44613 -11.20799 -11.12175 -11.04056 -10.90270 -10.66962 -10.63559 -9.74249 -9.30008 -8.78129 -7.83865 -5.23267 0.32266 1.46605 1.49313 1.50642 1.55515 1.59557 2.29213 2.43484 2.50551 3.14025 3.31947 3.61302 3.69446 3.82761 3.91069 4.04574 4.12004 4.16732 4.17580 4.29885 4.42779 4.46352 4.55641 4.66236 4.69460 4.73750 4.83680 4.86900 4.91202 4.94933 5.03855 5.05168 5.07662 5.14835 5.17053 5.24143 5.32127 5.39263 5.40388 5.42304 5.49002 5.56003 5.65030 5.68054 5.78461 5.81507 6.20773 6.28031 6.29050 6.75996 7.02736 7.07546 7.74747 8.53816 9.26168 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003227 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.018725 B = 8674.839956 C = 8810.198994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.030 4.030 3 C 0.002 3.998 4 N -0.519 5.519 5 H 0.437 0.563 6 C 0.114 3.886 7 C 0.590 3.410 8 O -0.584 6.584 9 N -0.570 5.570 10 C 0.098 3.902 11 C -0.096 4.096 12 C -0.138 4.138 13 C -0.088 4.088 14 C -0.068 4.068 15 C -0.122 4.122 16 C 0.156 3.844 17 N -0.620 5.620 18 C -0.234 4.234 19 H 0.077 0.923 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.135 3.865 27 C 0.142 3.858 28 N -0.434 5.434 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.060 0.940 44 H -0.002 1.002 45 H 0.248 0.752 46 H 0.039 0.961 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 21.607 5.249 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.164 4.164 3 C -0.138 4.138 4 N -0.121 5.121 5 H 0.277 0.723 6 C -0.144 4.144 7 C 0.378 3.622 8 O -0.465 6.465 9 N -0.299 5.299 10 C -0.024 4.024 11 C -0.134 4.134 12 C -0.175 4.175 13 C -0.126 4.126 14 C -0.070 4.070 15 C -0.162 4.162 16 C 0.030 3.970 17 N -0.345 5.345 18 C -0.363 4.363 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.011 3.989 27 C 0.021 3.979 28 N -0.159 5.159 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.245 0.755 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.139 20.752 5.141 26.197 hybrid contribution 1.427 0.131 -0.848 1.665 sum -13.712 20.883 4.292 25.349 Atomic orbital electron populations 1.20121 0.85081 1.03811 1.03084 1.21655 0.98497 0.88149 1.08139 1.23482 0.81707 1.02596 1.06025 1.42983 1.10351 1.06679 1.52090 0.72273 1.22121 0.93273 0.83045 1.15976 1.17014 0.85933 0.82426 0.76857 1.90779 1.25571 1.76344 1.53761 1.47462 1.10140 1.04559 1.67770 1.22228 0.80761 1.00523 0.98867 1.20811 0.99789 0.97303 0.95522 1.20811 0.95005 1.00030 1.01641 1.21043 0.94918 1.00831 0.95790 1.21325 0.96383 0.93530 0.95793 1.22753 0.96014 0.97246 1.00156 1.21509 0.96163 0.92249 0.87086 1.45259 1.22183 1.58811 1.08212 1.19283 1.21476 1.10320 0.85247 0.90536 1.25707 1.00210 0.98472 1.01098 1.70042 1.28540 1.29374 1.31481 0.85219 0.77296 0.77794 0.79425 1.20494 1.22086 1.20211 1.22273 0.90104 0.91233 0.95294 1.21908 0.86426 0.89976 0.99634 1.70371 0.98976 1.31062 1.15482 0.90647 0.91588 0.88799 0.75474 0.87357 0.91189 0.92615 0.89613 0.91246 0.91198 0.92754 0.91288 0.92737 0.90066 0.92190 0.98418 0.94298 0.94370 0.92828 0.93360 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.42 71.24 0.74 0.12 16 2 C -0.03 -0.49 7.07 41.75 0.30 -0.19 16 3 C 0.00 0.02 11.91 83.52 0.99 1.02 16 4 N -0.52 -9.03 6.15 -188.02 -1.16 -10.18 16 5 H 0.44 6.07 8.96 -92.71 -0.83 5.24 16 6 C 0.11 2.86 7.45 136.28 1.01 3.87 16 7 C 0.59 18.60 7.61 86.66 0.66 19.26 16 8 O -0.58 -21.39 16.42 -4.03 -0.07 -21.46 16 9 N -0.57 -17.82 2.27 -821.83 -1.87 -19.69 16 10 C 0.10 2.68 4.88 87.35 0.43 3.11 16 11 C -0.10 -2.29 4.88 29.35 0.14 -2.14 16 12 C -0.14 -3.53 4.95 28.69 0.14 -3.39 16 13 C -0.09 -2.56 4.88 29.79 0.15 -2.41 16 14 C -0.07 -2.39 0.68 -51.87 -0.04 -2.42 16 15 C -0.12 -4.75 6.21 31.43 0.20 -4.55 16 16 C 0.16 7.75 5.99 86.56 0.52 8.27 16 17 N -0.62 -31.99 3.39 -688.46 -2.33 -34.33 16 18 C -0.23 -13.21 10.36 84.03 0.87 -12.34 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 20 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 21 N -0.95 -57.27 10.57 21.65 0.23 -57.04 16 22 Si 0.97 46.16 29.55 68.60 2.03 48.18 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 C 0.14 5.49 4.43 86.37 0.38 5.87 16 27 C 0.14 5.09 4.68 86.55 0.41 5.50 16 28 N -0.43 -9.80 6.29 -177.64 -1.12 -10.92 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.23 0.48 8.06 -2.91 -0.02 0.45 16 33 H 0.11 2.87 5.40 -2.39 -0.01 2.86 16 34 H 0.07 2.07 5.15 -2.38 -0.01 2.05 16 35 H 0.06 1.42 7.22 -2.39 -0.02 1.40 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.07 1.98 4.59 -2.39 -0.01 1.97 16 39 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 40 H 0.07 1.93 7.42 -2.38 -0.02 1.92 16 41 H 0.05 2.14 7.49 -2.38 -0.02 2.12 16 42 H 0.08 2.74 7.34 -2.39 -0.02 2.73 16 43 H 0.06 3.41 6.22 -2.39 -0.01 3.40 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.04 1.55 5.96 -2.39 -0.01 1.53 16 47 H 0.05 2.13 5.12 -2.38 -0.01 2.11 16 48 H 0.05 1.97 7.96 -2.39 -0.02 1.95 16 49 H 0.08 2.82 6.70 -2.39 -0.02 2.80 16 Total: -1.00 -72.45 364.00 3.24 -69.21 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.16 Total: 19.70 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 7.37 Total: 16.51 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -6.24 Total: -132.15 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.07 Total: -21.46 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.45 3.24 -69.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045972552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.383 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds