Wall clock time and date at job start Tue Mar 31 2020 17:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33320 * 126.10903 * 2 1 4 4 C 1.30857 * 109.68544 * 179.97438 * 3 2 1 5 5 N 1.34498 * 109.16512 * 359.72729 * 4 3 2 6 6 C 1.46505 * 126.47644 * 180.29379 * 5 4 3 7 7 C 1.36667 * 126.10543 * 179.97438 * 2 1 3 8 8 C 1.46767 * 126.84452 * 0.02562 * 7 2 1 9 9 O 1.21683 * 119.99568 * 279.89138 * 8 7 2 10 10 N 1.34768 * 120.00105 * 99.89257 * 8 7 2 11 11 C 1.46947 * 120.71754 * 354.87935 * 10 8 7 12 12 C 1.53191 * 108.90351 * 234.30419 * 11 10 8 13 13 C 1.53183 * 109.27393 * 304.61387 * 12 11 10 14 14 C 1.52069 * 109.73300 * 59.92680 * 13 12 11 15 15 C 1.54585 * 110.67879 * 64.31117 * 14 13 12 16 16 C 1.54461 * 102.76014 * 152.61629 * 15 14 13 17 17 N 1.47077 * 107.42927 * 338.69217 * 16 15 14 18 18 C 1.36935 * 125.63419 * 178.94787 * 17 16 15 19 19 H 1.07995 * 120.00623 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99945 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00468 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47211 * 89.99483 * 22 20 18 24 24 H 1.48504 * 109.47420 * 209.99952 * 22 20 18 25 25 H 1.48496 * 109.46861 * 329.99662 * 22 20 18 26 26 C 1.47580 * 108.74102 * 358.92842 * 17 16 15 27 27 C 1.47096 * 120.72157 * 174.85260 * 10 8 7 28 28 H 1.08998 * 109.47076 * 270.02474 * 1 2 3 29 29 H 1.09000 * 109.46758 * 30.02309 * 1 2 3 30 30 H 1.09001 * 109.47561 * 150.02648 * 1 2 3 31 31 H 1.07996 * 125.41985 * 180.02562 * 4 3 2 32 32 H 1.08992 * 109.46682 * 275.15323 * 6 5 4 33 33 H 1.09001 * 109.46810 * 35.15471 * 6 5 4 34 34 H 1.08998 * 109.46978 * 155.15440 * 6 5 4 35 35 H 1.09005 * 109.56849 * 114.48086 * 11 10 8 36 36 H 1.08998 * 109.56767 * 354.13031 * 11 10 8 37 37 H 1.09000 * 109.50402 * 184.67329 * 12 11 10 38 38 H 1.09005 * 109.53305 * 64.57172 * 12 11 10 39 39 H 1.08999 * 109.43094 * 299.84624 * 13 12 11 40 40 H 1.08998 * 109.38284 * 179.97438 * 13 12 11 41 41 H 1.09001 * 110.70814 * 34.34077 * 15 14 13 42 42 H 1.09006 * 110.85703 * 270.95842 * 15 14 13 43 43 H 1.09007 * 109.87878 * 219.19318 * 16 15 14 44 44 H 1.09003 * 109.88210 * 98.19545 * 16 15 14 45 45 H 0.97002 * 119.99852 * 180.02562 * 21 20 18 46 46 H 1.09004 * 110.37211 * 142.11776 * 26 17 16 47 47 H 1.08997 * 110.37889 * 264.46671 * 26 17 16 48 48 H 1.08998 * 109.56618 * 7.97523 * 27 10 8 49 49 H 1.09005 * 109.57022 * 247.62340 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 0.0006 5 7 3.6121 -0.6363 0.0070 6 6 4.8305 -1.4499 0.0157 7 6 2.3123 -1.1042 0.0005 8 6 1.8820 -2.5073 0.0006 9 8 1.5301 -3.0357 1.0388 10 7 1.8765 -3.2106 -1.1490 11 6 2.1903 -2.5597 -2.4286 12 6 1.0457 -2.8215 -3.4124 13 6 0.8172 -4.3314 -3.5322 14 6 0.4578 -4.9060 -2.1709 15 6 -0.8878 -4.3302 -1.6734 16 6 -1.4202 -5.4521 -0.7548 17 7 -0.7453 -6.6990 -1.1459 18 6 -0.9266 -7.9225 -0.5582 19 1 -0.3817 -8.7816 -0.9203 20 6 -1.8109 -8.0584 0.5032 21 7 -2.4747 -7.0112 0.9449 22 14 -2.0588 -9.7274 1.3045 23 1 -1.0879 -9.8920 2.4160 24 1 -3.4418 -9.8202 1.8375 25 1 -1.8439 -10.7970 0.2971 26 6 0.1592 -6.4141 -2.2767 27 6 1.5568 -4.6464 -1.1501 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.3970 1.3743 0.0011 32 1 5.1881 -1.5795 -1.0057 33 1 5.5968 -0.9502 0.6084 34 1 4.6130 -2.4252 0.4511 35 1 3.1171 -2.9703 -2.8294 36 1 2.3011 -1.4864 -2.2747 37 1 1.3053 -2.4140 -4.3895 38 1 0.1360 -2.3435 -3.0487 39 1 1.7267 -4.8079 -3.8981 40 1 0.0027 -4.5197 -4.2316 41 1 -1.5669 -4.1606 -2.5089 42 1 -0.7315 -3.4108 -1.1089 43 1 -2.4974 -5.5573 -0.8845 44 1 -1.1933 -5.2184 0.2854 45 1 -3.0923 -7.1061 1.6868 46 1 1.0793 -6.9908 -2.1812 47 1 -0.3336 -6.6380 -3.2227 48 1 1.2130 -4.9446 -0.1597 49 1 2.4456 -5.2181 -1.4173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054148930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:11 Heat of formation + Delta-G solvation = 56.926925 kcal Electronic energy + Delta-G solvation = -30606.420387 eV Core-core repulsion = 26763.298424 eV Total energy + Delta-G solvation = -3843.121962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38115 -40.17080 -38.14011 -35.87159 -34.63905 -33.11023 -31.91657 -31.38789 -29.92246 -28.70635 -28.49838 -26.47911 -25.63399 -25.42708 -23.70496 -22.49772 -21.77185 -20.72275 -20.10712 -19.18702 -18.18100 -17.53525 -16.72848 -16.59513 -15.79959 -15.61080 -15.34869 -14.94077 -14.54736 -14.33370 -13.95113 -13.86735 -13.66854 -13.49740 -13.21509 -13.15850 -12.94776 -12.79389 -12.43070 -12.39867 -12.25052 -12.18745 -11.90934 -11.64955 -11.17029 -11.02528 -10.83434 -10.79020 -10.58081 -10.43946 -10.10688 -10.02111 -9.90891 -9.81849 -9.70954 -9.64294 -9.50660 -8.53299 -8.51372 -8.45927 -6.75315 -5.63002 -2.97001 1.57801 2.14906 2.75728 2.86539 3.18775 3.44837 3.49115 3.51551 4.32253 4.36771 4.44533 4.55082 4.73971 4.76009 4.88723 4.93138 5.03829 5.05657 5.15863 5.18747 5.29360 5.40796 5.53043 5.58855 5.69788 5.74315 5.79891 5.82256 5.88840 5.93031 5.98855 6.02387 6.05059 6.13763 6.26570 6.32370 6.45067 6.45758 6.52101 6.62070 6.71240 6.78844 6.89994 6.91698 7.42396 7.63943 7.74150 7.83635 7.93636 8.17828 8.34104 9.29344 9.89934 10.56127 11.48120 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.003592 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.384593 B = 7792.228566 C = 8247.726324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.058 3.942 3 N -0.491 5.491 4 C 0.194 3.806 5 N -0.442 5.442 6 C 0.070 3.930 7 C -0.067 4.067 8 C 0.591 3.409 9 O -0.510 6.510 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.132 4.132 13 C -0.101 4.101 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.149 3.851 27 C 0.134 3.866 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.209 0.791 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.022 0.978 48 H 0.106 0.894 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.951 14.844 -8.799 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.210 5.210 4 C -0.087 4.087 5 N -0.126 5.126 6 C -0.073 4.073 7 C -0.183 4.183 8 C 0.375 3.625 9 O -0.383 6.383 10 N -0.330 5.330 11 C -0.011 4.011 12 C -0.170 4.170 13 C -0.139 4.139 14 C -0.088 4.088 15 C -0.166 4.166 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.022 3.978 27 C 0.013 3.987 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.125 0.875 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.493 15.134 -8.029 22.440 hybrid contribution 0.340 -1.608 0.415 1.695 sum 14.833 13.526 -7.614 21.470 Atomic orbital electron populations 1.20146 0.86930 1.02921 1.03158 1.20855 0.96468 0.86687 1.03431 1.70010 1.00325 1.30158 1.20529 1.24937 0.97203 0.81608 1.04987 1.45295 1.05862 1.07718 1.53682 1.22137 0.84676 0.96568 1.03879 1.20781 0.84617 0.95258 1.17666 1.16951 0.78564 0.83116 0.83852 1.90927 1.46476 1.69319 1.31605 1.48159 1.68118 1.10531 1.06225 1.21660 0.97939 0.97694 0.83852 1.21912 0.98910 0.97606 0.98566 1.21327 1.01504 0.94275 0.96819 1.21447 0.95590 0.97882 0.93872 1.22830 0.94800 0.99381 0.99621 1.21159 0.95604 0.82309 0.95540 1.44510 1.47517 1.05860 1.35180 1.19012 1.20492 0.85270 1.11097 0.90571 1.24792 0.99270 0.97363 0.98850 1.69981 1.30395 1.27538 1.28574 0.86159 0.77140 0.83311 0.79368 1.21657 1.21731 1.20793 1.21409 0.93709 0.90775 0.91883 1.21510 0.96819 0.77746 1.02657 0.90564 0.90652 0.91092 0.77415 0.90008 0.88965 0.89456 0.91742 0.90419 0.91072 0.91049 0.92173 0.91389 0.92656 0.92507 0.94282 0.93412 0.93800 0.94472 0.96059 0.87530 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.24 36.00 0.37 -0.60 16 2 C 0.06 0.82 7.15 -82.52 -0.59 0.23 16 3 N -0.49 -6.52 11.20 -10.65 -0.12 -6.63 16 4 C 0.19 1.92 12.52 -90.57 -1.13 0.78 16 5 N -0.44 -4.61 3.17 -121.97 -0.39 -4.99 16 6 C 0.07 0.46 11.07 59.85 0.66 1.13 16 7 C -0.07 -0.93 4.62 -82.14 -0.38 -1.31 16 8 C 0.59 9.65 6.61 -12.82 -0.08 9.56 16 9 O -0.51 -10.79 16.54 5.20 0.09 -10.70 16 10 N -0.60 -8.52 2.60 -174.71 -0.45 -8.98 16 11 C 0.11 1.20 6.30 -3.70 -0.02 1.18 16 12 C -0.13 -1.41 5.92 -26.54 -0.16 -1.56 16 13 C -0.10 -1.27 4.65 -27.11 -0.13 -1.39 16 14 C -0.09 -1.43 0.56 -153.97 -0.09 -1.51 16 15 C -0.13 -2.44 4.92 -25.13 -0.12 -2.56 16 16 C 0.18 4.46 4.95 -2.96 -0.01 4.44 16 17 N -0.60 -15.44 3.39 -170.32 -0.58 -16.02 16 18 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 21 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.15 2.99 6.15 -2.87 -0.02 2.97 16 27 C 0.13 2.24 5.08 -4.11 -0.02 2.21 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 31 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.83 6.38 -51.93 -0.33 0.50 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 42 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 43 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 44 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.04 0.72 8.01 -51.93 -0.42 0.30 16 47 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 48 H 0.11 2.29 6.61 -51.93 -0.34 1.95 16 49 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -35.50 384.70 -10.15 -45.65 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.07 Total: -1.16 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.98 Total: 6.66 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.96 Total: -63.81 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.50 -10.15 -45.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054148930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.577 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds