Wall clock time and date at job start Tue Mar 31 2020 18:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34857 * 125.96650 * 2 1 4 4 N 1.36048 * 106.77775 * 180.02562 * 3 2 1 5 5 C 1.35697 * 107.39269 * 359.87884 * 4 3 2 6 6 N 1.30091 * 108.54577 * 0.14604 * 5 4 3 7 7 C 1.51036 * 124.06063 * 180.11651 * 5 4 3 8 8 C 1.53400 * 108.21476 * 15.98109 * 7 5 4 9 9 H 1.09007 * 109.50919 * 71.10812 * 8 7 5 10 10 C 1.50695 * 109.51394 * 191.25341 * 8 7 5 11 11 O 1.21281 * 119.99917 * 119.75939 * 10 8 7 12 12 N 1.34777 * 119.99964 * 299.76404 * 10 8 7 13 13 C 1.46505 * 120.00191 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.47231 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84366 * 314.66277 * 14 13 12 16 16 C 1.53778 * 113.61654 * 85.86121 * 14 13 12 17 17 C 1.53953 * 87.01928 * 139.95233 * 16 14 13 18 18 H 1.08993 * 113.53731 * 89.18914 * 17 16 14 19 19 N 1.46500 * 113.74218 * 220.05689 * 17 16 14 20 20 C 1.36941 * 120.00096 * 252.60067 * 19 17 16 21 21 H 1.08004 * 119.99644 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00108 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99851 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00292 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47166 * 89.99311 * 24 22 20 26 26 H 1.48496 * 109.47465 * 210.00129 * 24 22 20 27 27 H 1.48502 * 109.46573 * 329.99831 * 24 22 20 28 28 C 1.53780 * 113.61174 * 183.46951 * 14 13 12 29 29 C 1.53150 * 109.23549 * 311.18245 * 8 7 5 30 30 C 1.46471 * 127.99299 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46987 * 270.00412 * 1 2 3 32 32 H 1.09000 * 109.46788 * 30.00396 * 1 2 3 33 33 H 1.08997 * 109.46835 * 150.00257 * 1 2 3 34 34 H 1.08008 * 126.65129 * 0.04652 * 3 2 1 35 35 H 1.09000 * 109.71811 * 256.30294 * 7 5 4 36 36 H 1.09004 * 109.72070 * 135.66197 * 7 5 4 37 37 H 0.97005 * 120.00152 * 359.97438 * 12 10 8 38 38 H 1.09001 * 109.46929 * 299.99726 * 13 12 10 39 39 H 1.09003 * 109.47189 * 59.99483 * 13 12 10 40 40 H 1.09005 * 113.61243 * 254.53119 * 16 14 13 41 41 H 1.09000 * 113.61634 * 25.42784 * 16 14 13 42 42 H 0.96995 * 120.00096 * 72.59188 * 19 17 16 43 43 H 0.97007 * 119.99809 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61694 * 334.56217 * 28 14 13 45 45 H 1.09002 * 113.61404 * 105.38778 * 28 14 13 46 46 H 1.08994 * 109.46918 * 309.47672 * 29 8 7 47 47 H 1.09000 * 109.46493 * 189.48733 * 29 8 7 48 48 H 1.09002 * 109.58349 * 77.26533 * 30 4 3 49 49 H 1.09005 * 109.58201 * 316.99164 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5839 0.6443 -0.0006 5 6 3.5414 -0.7120 0.0018 6 7 2.2957 -1.0869 0.0006 7 6 4.7655 -1.5967 0.0046 8 6 5.9743 -0.7415 0.4054 9 1 5.9059 -0.4876 1.4633 10 6 7.2433 -1.5141 0.1533 11 8 8.0736 -1.0815 -0.6177 12 7 7.4556 -2.6858 0.7846 13 6 8.6895 -3.4367 0.5400 14 6 8.6802 -4.7191 1.3745 15 1 8.3632 -4.5517 2.4039 16 6 7.9601 -5.8935 0.6913 17 6 9.0825 -6.7947 1.2374 18 1 8.8747 -7.1961 2.2292 19 7 9.5290 -7.8198 0.2909 20 6 9.1982 -9.1326 0.4968 21 1 8.6085 -9.4122 1.3573 22 6 9.6209 -10.1038 -0.4003 23 7 9.3033 -11.3657 -0.2020 24 14 10.6404 -9.6201 -1.8890 25 1 12.0826 -9.6697 -1.5386 26 1 10.3687 -10.5638 -3.0029 27 1 10.2801 -8.2420 -2.3089 28 6 9.9739 -5.5417 1.2543 29 6 5.9829 0.5426 -0.4292 30 6 4.8149 1.4382 -0.0013 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9764 2.1222 0.0007 35 1 4.9223 -2.0108 -0.9914 36 1 4.6331 -2.4057 0.7231 37 1 6.7916 -3.0317 1.4015 38 1 8.7561 -3.6917 -0.5177 39 1 9.5479 -2.8267 0.8214 40 1 6.9795 -6.1105 1.1150 41 1 7.9461 -5.8240 -0.3964 42 1 10.0589 -7.5687 -0.4818 43 1 9.5990 -12.0445 -0.8288 44 1 10.5117 -5.3758 0.3208 45 1 10.6175 -5.4739 2.1314 46 1 5.8803 0.2905 -1.4846 47 1 6.9228 1.0718 -0.2719 48 1 4.9997 1.8266 1.0002 49 1 4.7145 2.2672 -0.7019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086121518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:58 Heat of formation + Delta-G solvation = 20.845157 kcal Electronic energy + Delta-G solvation = -27713.684979 eV Core-core repulsion = 23868.998394 eV Total energy + Delta-G solvation = -3844.686585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32954 -41.10136 -39.92856 -37.37910 -36.12717 -35.08860 -34.32307 -32.73809 -32.44838 -30.17565 -28.98018 -27.88166 -26.46021 -25.66735 -24.98889 -23.85840 -22.35136 -21.69644 -21.19216 -20.62455 -20.09629 -19.34277 -18.15461 -17.86212 -17.20249 -16.88041 -16.57274 -16.50005 -16.06231 -15.84219 -15.17893 -15.15571 -15.11573 -14.83828 -14.71142 -14.55767 -14.26085 -13.96346 -13.82012 -13.50114 -13.24215 -13.16467 -13.13944 -13.03439 -12.83695 -12.70634 -12.59439 -12.28235 -12.14260 -12.13197 -11.89632 -11.68430 -11.59527 -11.12774 -10.94757 -10.89241 -10.78183 -10.48264 -10.06763 -9.26034 -9.12723 -8.02784 -5.34984 1.07499 1.37018 1.39796 1.46966 1.53911 1.85327 2.07255 2.13323 2.47650 3.15058 3.27601 3.47709 3.49836 3.57826 3.61021 3.74070 3.84550 3.98769 4.07614 4.10810 4.14260 4.24875 4.29761 4.34555 4.39664 4.46376 4.51279 4.57217 4.64291 4.73556 4.80011 4.85465 4.90852 4.96837 4.99058 5.03073 5.05581 5.06858 5.17029 5.23709 5.34825 5.37785 5.45367 5.67385 5.78546 5.88240 6.23310 6.23897 6.52781 7.08292 7.16031 7.20416 7.86932 8.04206 9.18754 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.002069 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.889173 B =13532.960867 C =14495.199002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.041 4.041 3 C -0.043 4.043 4 N -0.455 5.455 5 C 0.193 3.807 6 N -0.526 5.526 7 C -0.020 4.020 8 C -0.099 4.099 9 H 0.130 0.870 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.713 5.713 13 C 0.137 3.863 14 C -0.096 4.096 15 H 0.120 0.880 16 C -0.156 4.156 17 C 0.144 3.856 18 H 0.077 0.923 19 N -0.744 5.744 20 C -0.230 4.230 21 H 0.059 0.941 22 C -0.068 4.068 23 N -0.984 5.984 24 Si 0.954 3.046 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.254 1.254 28 C -0.135 4.135 29 C -0.113 4.113 30 C 0.105 3.895 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.207 0.793 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 34.864 4.246 36.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.170 4.170 3 C -0.177 4.177 4 N -0.138 5.138 5 C -0.069 4.069 6 N -0.247 5.247 7 C -0.059 4.059 8 C -0.120 4.120 9 H 0.148 0.852 10 C 0.307 3.693 11 O -0.458 6.458 12 N -0.364 5.364 13 C 0.013 3.987 14 C -0.115 4.115 15 H 0.138 0.862 16 C -0.197 4.197 17 C 0.035 3.965 18 H 0.095 0.905 19 N -0.385 5.385 20 C -0.361 4.361 21 H 0.077 0.923 22 C -0.259 4.259 23 N -0.635 5.635 24 Si 0.782 3.218 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.179 1.179 28 C -0.175 4.175 29 C -0.151 4.151 30 C -0.016 4.016 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.125 0.875 48 H 0.129 0.871 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.948 34.267 3.807 36.174 hybrid contribution 0.484 -0.145 -0.906 1.037 sum -10.463 34.122 2.902 35.808 Atomic orbital electron populations 1.20042 0.86417 1.02986 1.02568 1.21357 0.97787 0.88549 1.09269 1.22761 0.82481 1.01398 1.11016 1.45593 1.07545 1.07049 1.53565 1.23308 0.94497 0.82665 1.06477 1.69889 1.01058 1.32291 1.21452 1.20096 0.85908 0.95655 1.04236 1.21382 0.90818 0.95619 1.04205 0.85217 1.20672 0.87963 0.81174 0.79467 1.90713 1.48023 1.69583 1.37477 1.45971 1.22387 1.21569 1.46494 1.21257 0.86773 0.91664 0.98995 1.22467 0.97288 0.91426 1.00367 0.86207 1.23769 0.99325 0.96705 0.99865 1.21986 0.94797 0.86721 0.93007 0.90480 1.42794 1.64021 1.03464 1.28234 1.19132 1.26207 0.83867 1.06929 0.92289 1.25522 1.02900 0.95137 1.02368 1.69887 1.52829 1.00967 1.39821 0.85419 0.78988 0.77977 0.79440 1.20359 1.22488 1.17914 1.23346 0.96603 0.94873 1.02639 1.21693 0.99063 0.94460 0.99884 1.22270 0.79896 0.94043 1.05399 0.90999 0.89253 0.92583 0.77581 0.89956 0.87151 0.74786 0.93145 0.91125 0.91667 0.91847 0.80207 0.93443 0.90529 0.89916 0.91679 0.87450 0.87105 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.42 71.24 0.74 -0.13 16 2 C -0.04 -0.81 7.10 41.41 0.29 -0.52 16 3 C -0.04 -0.60 11.54 83.26 0.96 0.36 16 4 N -0.45 -6.43 3.14 -513.78 -1.61 -8.04 16 5 C 0.19 3.76 7.65 138.14 1.06 4.81 16 6 N -0.53 -13.07 11.24 -175.49 -1.97 -15.04 16 7 C -0.02 -0.30 5.47 30.09 0.16 -0.13 16 8 C -0.10 -1.16 2.55 -11.36 -0.03 -1.18 16 9 H 0.13 0.93 8.12 -2.38 -0.02 0.91 16 10 C 0.52 9.36 7.13 87.66 0.63 9.98 16 11 O -0.58 -15.22 15.83 -3.03 -0.05 -15.27 16 12 N -0.71 -11.29 5.46 -463.05 -2.53 -13.82 16 13 C 0.14 2.73 5.50 86.38 0.47 3.20 16 14 C -0.10 -1.96 3.75 -10.27 -0.04 -2.00 16 15 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 16 C -0.16 -4.45 7.45 31.18 0.23 -4.22 16 17 C 0.14 5.00 4.48 45.58 0.20 5.21 16 18 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 19 N -0.74 -34.07 5.21 -320.17 -1.67 -35.74 16 20 C -0.23 -13.06 10.45 84.03 0.88 -12.19 16 21 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 23 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 24 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 27 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 28 C -0.14 -3.48 7.40 31.12 0.23 -3.25 16 29 C -0.11 -1.20 4.67 30.74 0.14 -1.05 16 30 C 0.10 0.71 6.98 86.48 0.60 1.32 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 36 H 0.11 1.43 7.95 -2.38 -0.02 1.41 16 37 H 0.42 4.49 8.20 -92.70 -0.76 3.73 16 38 H 0.05 1.24 7.88 -2.39 -0.02 1.22 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 2.01 7.92 -2.39 -0.02 2.00 16 42 H 0.36 16.19 5.79 -92.71 -0.54 15.66 16 43 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 44 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 47 H 0.11 1.06 7.79 -2.39 -0.02 1.05 16 48 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -81.31 395.10 0.99 -80.33 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.40 Total: 26.30 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 7.01 Total: -3.36 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -7.48 Total: -135.94 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.05 Total: -15.27 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -81.31 0.99 -80.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086121518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.171 kcal (2) G-P(sol) polarization free energy of solvation -81.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds