Wall clock time and date at job start Tue Mar 31 2020 18:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30781 * 125.72224 * 2 1 4 4 C 1.34435 * 109.31851 * 179.97438 * 3 2 1 5 5 C 1.33859 * 107.79744 * 359.97438 * 4 3 2 6 6 N 1.34406 * 125.72388 * 180.02562 * 2 1 3 7 7 C 1.46478 * 128.44285 * 0.20883 * 6 2 1 8 8 C 1.53273 * 108.70066 * 162.68312 * 7 6 2 9 9 C 1.53116 * 109.71706 * 50.73826 * 8 7 6 10 10 H 1.08994 * 109.52406 * 50.06751 * 9 8 7 11 11 C 1.50697 * 109.49441 * 170.15306 * 9 8 7 12 12 O 1.21283 * 120.00247 * 359.83460 * 11 9 8 13 13 N 1.34777 * 119.99981 * 179.83831 * 11 9 8 14 14 C 1.46493 * 120.00318 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47590 * 179.97438 * 14 13 11 16 16 H 1.09005 * 112.84870 * 316.20258 * 15 14 13 17 17 C 1.53958 * 113.74193 * 87.39739 * 15 14 13 18 18 C 1.53781 * 87.02034 * 139.94695 * 17 15 14 19 19 H 1.09003 * 113.61454 * 89.22905 * 18 17 15 20 20 N 1.46496 * 113.61833 * 220.05435 * 18 17 15 21 21 C 1.36945 * 119.99718 * 254.13659 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.53780 * 113.61994 * 184.99916 * 15 14 13 30 30 C 1.50706 * 128.67960 * 180.12640 * 5 4 3 31 31 H 1.08999 * 109.47384 * 89.98005 * 1 2 3 32 32 H 1.09000 * 109.47152 * 209.97941 * 1 2 3 33 33 H 1.08995 * 109.47070 * 329.97527 * 1 2 3 34 34 H 1.07996 * 126.09532 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.59956 * 282.40342 * 7 6 2 36 36 H 1.09007 * 109.59919 * 42.71985 * 7 6 2 37 37 H 1.08997 * 109.41146 * 290.66871 * 8 7 6 38 38 H 1.09005 * 109.43323 * 170.82194 * 8 7 6 39 39 H 0.97001 * 120.00130 * 359.97438 * 13 11 9 40 40 H 1.09005 * 109.47156 * 59.99850 * 14 13 11 41 41 H 1.08996 * 109.47274 * 300.00011 * 14 13 11 42 42 H 1.09001 * 113.61085 * 25.42977 * 17 15 14 43 43 H 1.08996 * 113.67079 * 254.47444 * 17 15 14 44 44 H 0.96996 * 120.00499 * 74.13389 * 20 18 17 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 46 46 H 1.08995 * 113.61248 * 105.38508 * 29 15 14 47 47 H 1.09000 * 113.68847 * 334.49784 * 29 15 14 48 48 H 1.08998 * 109.74428 * 44.62543 * 30 5 4 49 49 H 1.08997 * 109.78993 * 283.93283 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5928 -0.6561 0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8921 -2.5004 -0.0053 8 6 3.0927 -3.3502 -0.4361 9 6 4.3184 -2.9747 0.4012 10 1 4.0545 -2.9857 1.4587 11 6 5.4237 -3.9674 0.1482 12 8 5.2482 -4.8867 -0.6231 13 7 6.6071 -3.8336 0.7790 14 6 7.6814 -4.7988 0.5335 15 6 8.9075 -4.4204 1.3668 16 1 9.1223 -3.3520 1.3427 17 6 8.8986 -5.0137 2.7874 18 6 10.4042 -5.2677 2.6041 19 1 11.0294 -4.4319 2.9180 20 7 10.8536 -6.5508 3.1500 21 6 11.5733 -6.5850 4.3146 22 1 11.8097 -5.6661 4.8304 23 6 11.9987 -7.8007 4.8321 24 7 11.7109 -8.9205 4.2032 25 14 12.9809 -7.8473 6.4203 26 1 13.3111 -9.2554 6.7570 27 1 14.2354 -7.0713 6.2494 28 1 12.1764 -7.2522 7.5175 29 6 10.1365 -5.3023 1.0901 30 6 4.7918 -1.5691 0.0050 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 4.4170 1.3396 0.0003 35 1 1.5772 -2.7945 0.9958 36 1 1.0686 -2.6445 -0.7048 37 1 3.3045 -3.1701 -1.4900 38 1 2.8619 -4.4052 -0.2884 39 1 6.7476 -3.0981 1.3957 40 1 7.9442 -4.7887 -0.5243 41 1 7.3445 -5.7966 0.8146 42 1 8.3094 -5.9265 2.8757 43 1 8.6704 -4.2845 3.5648 44 1 10.6415 -7.3760 2.6865 45 1 12.0086 -9.7700 4.5646 46 1 10.9061 -4.8057 0.4992 47 1 9.8878 -6.2943 0.7132 48 1 5.5253 -1.2107 0.7272 49 1 5.2374 -1.5968 -0.9893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086197319.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:26 Heat of formation + Delta-G solvation = 40.801219 kcal Electronic energy + Delta-G solvation = -27636.674241 eV Core-core repulsion = 23792.853016 eV Total energy + Delta-G solvation = -3843.821225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75332 -40.19679 -38.60717 -36.64726 -34.83858 -33.86024 -33.27260 -31.64272 -30.38806 -30.08475 -27.94692 -26.58752 -25.14204 -24.72250 -23.98911 -22.96453 -21.12357 -21.03409 -20.55763 -19.38177 -19.06987 -17.39086 -17.14752 -17.02604 -16.39483 -16.08835 -15.70280 -14.98012 -14.85595 -14.53360 -14.44502 -14.29843 -14.16767 -13.91258 -13.60067 -13.46827 -13.36226 -13.09898 -12.93863 -12.77395 -12.32444 -12.21056 -11.97625 -11.87454 -11.63418 -11.53046 -11.41506 -11.27104 -10.85107 -10.58320 -10.38641 -10.24281 -10.18497 -9.88389 -9.86067 -9.85880 -9.52283 -9.13611 -8.89440 -8.52768 -6.99462 -5.80910 -3.10031 1.67302 2.36067 2.39935 2.80575 2.94902 3.41117 3.45692 3.46761 3.90555 4.08665 4.09366 4.13995 4.32124 4.54074 4.55741 4.63185 4.71434 4.85321 4.87815 4.91140 5.00788 5.05439 5.09631 5.15871 5.21400 5.24336 5.36505 5.40796 5.43189 5.45264 5.57183 5.61836 5.76178 5.78901 5.88263 6.03339 6.05583 6.18304 6.26121 6.30883 6.38106 6.43318 6.54671 6.77968 6.86119 7.07117 7.31981 7.65883 7.77601 8.01620 8.37620 9.48599 10.06672 10.40731 11.41304 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.001781 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.959499 B =15721.565586 C =15971.894362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.206 3.794 3 N -0.494 5.494 4 C -0.018 4.018 5 C -0.024 4.024 6 N -0.452 5.452 7 C 0.103 3.897 8 C -0.113 4.113 9 C -0.112 4.112 10 H 0.103 0.897 11 C 0.517 3.483 12 O -0.540 6.540 13 N -0.721 5.721 14 C 0.131 3.869 15 C -0.127 4.127 16 H 0.088 0.912 17 C -0.161 4.161 18 C 0.165 3.835 19 H 0.075 0.925 20 N -0.713 5.713 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.286 1.286 29 C -0.142 4.142 30 C -0.034 4.034 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.401 0.599 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.094 0.906 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.619 16.892 -10.452 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 N -0.213 5.213 4 C -0.166 4.166 5 C -0.138 4.138 6 N -0.137 5.137 7 C -0.020 4.020 8 C -0.151 4.151 9 C -0.134 4.134 10 H 0.121 0.879 11 C 0.302 3.698 12 O -0.417 6.417 13 N -0.372 5.372 14 C 0.008 3.992 15 C -0.146 4.146 16 H 0.107 0.893 17 C -0.202 4.202 18 C 0.053 3.947 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.212 1.212 28 H -0.213 1.213 29 C -0.181 4.181 30 C -0.073 4.073 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.188 0.812 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.112 0.888 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.944 16.855 -10.831 29.714 hybrid contribution 0.844 -0.848 1.091 1.618 sum -21.100 16.007 -9.741 28.220 Atomic orbital electron populations 1.20167 0.84953 1.03991 1.03463 1.23131 0.95628 0.81249 1.05594 1.70466 1.01985 1.28083 1.20796 1.21842 0.94883 0.91853 1.08024 1.20939 0.85333 0.95277 1.12296 1.45311 1.06282 1.07282 1.54795 1.22051 0.98891 0.77590 1.03427 1.21680 0.91802 1.00834 1.00831 1.21441 0.94851 0.94540 1.02541 0.87926 1.20317 0.83209 0.85770 0.80478 1.90725 1.81322 1.33596 1.36020 1.46068 1.13598 1.31187 1.46345 1.21466 0.85710 0.92310 0.99696 1.22673 0.94567 0.99716 0.97688 0.89344 1.23981 1.02550 1.00028 0.93643 1.21518 0.91916 0.90563 0.90672 0.90745 1.42402 1.63663 1.02387 1.26629 1.19254 1.26296 0.92743 0.99381 0.91148 1.24772 1.01447 0.95413 0.99255 1.69652 1.50910 0.97036 1.40406 0.86260 0.79991 0.76541 0.83337 1.21673 1.21218 1.21256 1.23423 0.95636 0.99320 0.99754 1.20174 0.93432 0.90115 1.03556 0.90218 0.90925 0.89144 0.81242 0.89484 0.88642 0.90047 0.88179 0.76498 0.91670 0.91160 0.90385 0.92777 0.78073 0.93390 0.91961 0.90106 0.88786 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.24 36.01 0.37 0.02 16 2 C 0.21 1.89 7.94 -155.76 -1.24 0.65 16 3 N -0.49 -5.71 11.27 -11.02 -0.12 -5.83 16 4 C -0.02 -0.19 11.84 -17.95 -0.21 -0.40 16 5 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 6 N -0.45 -3.69 3.13 -109.44 -0.34 -4.04 16 7 C 0.10 0.56 6.61 -3.91 -0.03 0.53 16 8 C -0.11 -0.78 4.66 -26.53 -0.12 -0.91 16 9 C -0.11 -0.82 2.55 -91.44 -0.23 -1.05 16 10 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 11 C 0.52 5.42 7.13 -10.99 -0.08 5.35 16 12 O -0.54 -7.84 15.82 5.55 0.09 -7.75 16 13 N -0.72 -6.95 5.46 -60.30 -0.33 -7.28 16 14 C 0.13 1.57 5.52 -4.05 -0.02 1.55 16 15 C -0.13 -1.57 3.75 -89.71 -0.34 -1.91 16 16 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.16 -2.53 7.45 -25.83 -0.19 -2.72 16 18 C 0.17 3.10 4.47 -67.12 -0.30 2.80 16 19 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 20 N -0.71 -17.47 5.41 -52.64 -0.28 -17.76 16 21 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 C -0.14 -2.15 7.39 -25.92 -0.19 -2.34 16 30 C -0.03 -0.23 5.44 -27.61 -0.15 -0.38 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.24 7.95 -51.93 -0.41 -0.17 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.10 0.72 7.77 -51.93 -0.40 0.32 16 39 H 0.40 2.90 8.19 -40.82 -0.33 2.57 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.98 7.86 -51.93 -0.41 0.58 16 42 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.39 10.08 7.91 -40.82 -0.32 9.76 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 48 H 0.09 0.48 7.95 -51.93 -0.41 0.06 16 49 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -34.70 397.42 -10.98 -45.68 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.16 Total: 7.98 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.52 Total: -6.89 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.36 Total: -62.09 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.70 -10.98 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086197319.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.477 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds