Wall clock time and date at job start Tue Mar 31 2020 18:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35368 * 127.24799 * 2 1 4 4 N 1.35036 * 107.22964 * 180.26112 * 3 2 1 5 5 C 1.46499 * 124.88284 * 179.72267 * 4 3 2 6 6 N 1.28465 * 110.22937 * 359.72674 * 4 3 2 7 7 C 1.31814 * 110.07701 * 359.97438 * 6 4 3 8 8 C 1.47706 * 126.52223 * 180.02562 * 7 6 4 9 9 O 1.21571 * 119.99862 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99728 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.53360 * 111.22614 * 297.63005 * 12 11 10 14 14 C 1.55546 * 105.83614 * 241.97155 * 13 12 11 15 15 C 1.54685 * 104.35050 * 334.36047 * 14 13 12 16 16 C 1.54570 * 111.31738 * 177.45559 * 12 11 10 17 17 H 1.08998 * 111.92492 * 18.70816 * 16 12 11 18 18 N 1.46897 * 107.36400 * 255.61831 * 16 12 11 19 19 C 1.36940 * 125.24661 * 181.65760 * 18 16 12 20 20 H 1.07996 * 120.00214 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99747 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99915 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47225 * 120.00269 * 23 21 19 26 26 H 1.48500 * 109.47250 * 240.00072 * 23 21 19 27 27 C 1.46727 * 109.50120 * 1.65755 * 18 16 12 28 28 C 1.53864 * 111.25953 * 61.01309 * 12 11 10 29 29 H 1.09002 * 109.46625 * 270.18509 * 1 2 3 30 30 H 1.08996 * 109.47436 * 30.18890 * 1 2 3 31 31 H 1.08997 * 109.47096 * 150.19333 * 1 2 3 32 32 H 1.07999 * 126.38651 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.46951 * 270.02260 * 5 4 3 34 34 H 1.08999 * 109.47384 * 30.02752 * 5 4 3 35 35 H 1.08998 * 109.46458 * 150.02370 * 5 4 3 36 36 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 38 38 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 39 39 H 1.09002 * 110.05483 * 1.97462 * 13 12 11 40 40 H 1.08994 * 110.05892 * 123.47642 * 13 12 11 41 41 H 1.08997 * 110.54007 * 215.54668 * 14 13 12 42 42 H 1.09003 * 110.23079 * 93.01640 * 14 13 12 43 43 H 1.08998 * 110.60929 * 278.64781 * 15 14 13 44 44 H 1.08998 * 110.74774 * 155.72876 * 15 14 13 45 45 H 0.97007 * 120.00073 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.04574 * 221.96979 * 27 18 16 47 47 H 1.08997 * 110.08851 * 100.53237 * 27 18 16 48 48 H 1.09003 * 110.57191 * 212.51356 * 28 12 11 49 49 H 1.08997 * 110.57297 * 335.38872 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 -0.0059 5 6 4.7936 1.4577 -0.0137 6 7 3.5998 -0.6693 -0.0037 7 6 2.3635 -1.1264 0.0042 8 6 1.9506 -2.5445 0.0095 9 8 0.7698 -2.8338 0.0162 10 7 2.8829 -3.5178 0.0069 11 6 2.4734 -4.9245 0.0116 12 6 3.7158 -5.8173 0.0081 13 6 4.5481 -5.6056 -1.2626 14 6 4.5572 -6.9766 -1.9973 15 6 4.3357 -8.0156 -0.8730 16 6 3.3329 -7.3133 0.0768 17 1 2.2949 -7.4813 -0.2100 18 7 3.6027 -7.7724 1.4458 19 6 3.4235 -9.0518 1.9000 20 1 3.0558 -9.8158 1.2311 21 6 3.7147 -9.3667 3.2202 22 7 4.1633 -8.4358 4.0353 23 14 3.4697 -11.1118 3.8400 24 1 2.9591 -11.9624 2.7351 25 1 4.7659 -11.6522 4.3230 26 1 2.4887 -11.1081 4.9549 27 6 4.0936 -6.6487 2.2515 28 6 4.5799 -5.5760 1.2581 29 1 -0.3632 0.0033 1.0277 30 1 -0.3634 0.8882 -0.5167 31 1 -0.3633 -0.8917 -0.5108 32 1 2.0220 2.1138 -0.0004 33 1 5.0852 1.6651 -1.0433 34 1 4.5821 2.3955 0.5000 35 1 5.6054 0.9391 0.4964 36 1 3.8250 -3.2870 0.0012 37 1 1.8827 -5.1279 0.9048 38 1 1.8742 -5.1314 -0.8751 39 1 4.0935 -4.8331 -1.8828 40 1 5.5671 -5.3226 -0.9991 41 1 5.5171 -7.1420 -2.4864 42 1 3.7451 -7.0206 -2.7232 43 1 5.2716 -8.2261 -0.3554 44 1 3.9058 -8.9332 -1.2745 45 1 4.3664 -8.6558 4.9580 46 1 4.9199 -6.9748 2.8833 47 1 3.2878 -6.2495 2.8675 48 1 5.6357 -5.7183 1.0273 49 1 4.4053 -4.5769 1.6573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094415381.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:36 Heat of formation + Delta-G solvation = 41.637370 kcal Electronic energy + Delta-G solvation = -29311.553633 eV Core-core repulsion = 25467.768666 eV Total energy + Delta-G solvation = -3843.784967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.61317 -41.31957 -40.00092 -36.35272 -35.42786 -34.80960 -33.49860 -32.90950 -31.93816 -29.65723 -28.87175 -28.34822 -27.52929 -25.77948 -25.58205 -23.50885 -22.01399 -21.59811 -21.41752 -20.94153 -19.71075 -18.96898 -18.46800 -17.33161 -17.29910 -16.85699 -16.71683 -16.30935 -16.20965 -15.68917 -15.14331 -15.09074 -14.58736 -14.40942 -14.38402 -14.25134 -14.16966 -13.97775 -13.44984 -13.30703 -13.26685 -13.18389 -13.01587 -12.91093 -12.86171 -12.64033 -12.43444 -11.97672 -11.88216 -11.80492 -11.62246 -11.56612 -11.44259 -11.35100 -11.08378 -11.01677 -10.68633 -10.30299 -10.03900 -9.65772 -8.83023 -7.76297 -5.16887 0.53503 1.17811 1.45151 1.46291 1.56344 1.62937 2.18073 2.36118 2.50813 3.34371 3.36151 3.50811 3.65191 3.70174 3.89667 3.95484 4.06916 4.27318 4.36728 4.38649 4.43064 4.45471 4.50900 4.52521 4.58149 4.61398 4.66231 4.73220 4.74103 4.84320 4.90464 4.92290 5.02902 5.06444 5.15339 5.16606 5.21417 5.27971 5.36113 5.40703 5.46001 5.52553 5.53922 5.60781 5.70967 5.86256 5.94102 6.31122 6.44926 6.92128 7.15112 7.17452 7.84786 8.46767 9.27879 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002839 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.780525 B = 9859.710556 C =10206.127873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.277 5.277 5 C 0.076 3.924 6 N -0.275 5.275 7 C -0.050 4.050 8 C 0.596 3.404 9 O -0.569 6.569 10 N -0.700 5.700 11 C 0.152 3.848 12 C -0.067 4.067 13 C -0.102 4.102 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.158 3.842 17 H 0.039 0.961 18 N -0.613 5.613 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.071 4.071 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.291 1.291 26 H -0.297 1.297 27 C 0.170 3.830 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.227 0.773 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.413 0.587 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.244 0.756 46 H 0.058 0.942 47 H -0.029 1.029 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 24.099 -13.414 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.185 4.185 3 C -0.147 4.147 4 N -0.065 5.065 5 C -0.063 4.063 6 N -0.113 5.113 7 C -0.208 4.208 8 C 0.382 3.618 9 O -0.447 6.447 10 N -0.351 5.351 11 C 0.028 3.972 12 C -0.068 4.068 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.163 4.163 16 C 0.051 3.949 17 H 0.057 0.943 18 N -0.337 5.337 19 C -0.355 4.355 20 H 0.098 0.902 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.224 1.224 27 C 0.045 3.955 28 C -0.155 4.155 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.250 0.750 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.076 0.924 47 H -0.011 1.011 48 H 0.093 0.907 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.150 23.485 -13.238 27.142 hybrid contribution -0.707 -1.023 1.200 1.728 sum 2.443 22.462 -12.038 25.601 Atomic orbital electron populations 1.20118 0.87872 1.03017 1.02185 1.20711 0.98203 0.90894 1.08710 1.23204 0.82791 1.01610 1.07125 1.45811 1.08790 1.03104 1.48792 1.22644 0.83208 0.94209 1.06198 1.73441 1.22486 0.95627 1.19735 1.21712 0.90887 0.94330 1.13828 1.17270 0.85067 0.83720 0.75757 1.90739 1.18287 1.83485 1.52191 1.45763 1.10269 1.05414 1.73700 1.21119 0.96010 0.79205 1.00858 1.21746 0.94378 0.93831 0.96891 1.22349 0.99652 0.98047 0.93918 1.22473 1.02386 0.93253 0.96684 1.22806 0.98958 0.98099 0.96447 1.21812 0.96041 0.91584 0.85425 0.94326 1.44601 1.76213 1.05911 1.07021 1.19426 1.35658 0.86015 0.94376 0.90207 1.25594 1.02527 1.01522 0.96648 1.70154 1.52452 1.32600 1.04961 0.85038 0.76765 0.79823 0.77922 1.19056 1.21828 1.22427 1.21149 0.96187 0.86096 0.92062 1.22621 0.99174 0.98532 0.95201 0.91880 0.89033 0.92747 0.75658 0.87861 0.85271 0.88449 0.74963 0.94478 0.90956 0.90227 0.90337 0.90200 0.90810 0.93223 0.92838 0.94675 0.92393 1.01097 0.90691 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.92 71.24 0.71 -0.87 16 2 C -0.17 -4.03 6.25 -19.72 -0.12 -4.16 16 3 C 0.00 -0.06 11.40 83.54 0.95 0.89 16 4 N -0.28 -4.34 3.70 -369.46 -1.37 -5.71 16 5 C 0.08 0.35 11.31 127.77 1.44 1.79 16 6 N -0.27 -6.58 11.67 -48.17 -0.56 -7.14 16 7 C -0.05 -1.41 7.13 42.46 0.30 -1.11 16 8 C 0.60 20.15 7.82 86.75 0.68 20.83 16 9 O -0.57 -22.70 15.12 -3.94 -0.06 -22.76 16 10 N -0.70 -21.65 4.64 -466.09 -2.16 -23.82 16 11 C 0.15 5.27 4.43 86.38 0.38 5.65 16 12 C -0.07 -2.30 0.53 -51.24 -0.03 -2.33 16 13 C -0.10 -2.66 5.75 31.59 0.18 -2.48 16 14 C -0.11 -2.88 6.88 32.05 0.22 -2.66 16 15 C -0.12 -4.43 6.23 31.84 0.20 -4.23 16 16 C 0.16 6.56 3.60 46.12 0.17 6.73 16 17 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 18 N -0.61 -32.11 2.99 -667.81 -1.99 -34.10 16 19 C -0.23 -12.89 9.96 84.03 0.84 -12.05 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 21 C -0.07 -4.14 5.48 84.86 0.47 -3.67 16 22 N -0.95 -58.76 10.14 21.65 0.22 -58.55 16 23 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 C 0.17 8.80 5.65 86.70 0.49 9.29 16 28 C -0.12 -4.45 5.77 31.25 0.18 -4.27 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.47 6.73 -2.39 -0.02 1.45 16 32 H 0.23 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.13 -0.25 8.13 -2.39 -0.02 -0.27 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.41 11.29 7.28 -92.71 -0.68 10.61 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.08 1.83 7.51 -2.39 -0.02 1.82 16 40 H 0.08 1.88 7.28 -2.39 -0.02 1.86 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 2.00 8.06 -2.39 -0.02 1.98 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 46 H 0.06 3.38 6.16 -2.39 -0.01 3.37 16 47 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 48 H 0.07 2.66 7.42 -2.39 -0.02 2.64 16 49 H 0.07 2.46 7.03 -2.39 -0.02 2.44 16 Total: -1.00 -79.80 386.37 3.43 -76.37 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.28 Total: 19.02 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 7.06 Total: 7.37 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -5.87 Total: -129.31 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -79.80 3.43 -76.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094415381.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.004 kcal (2) G-P(sol) polarization free energy of solvation -79.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds