Wall clock time and date at job start Tue Mar 31 2020 17:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.34125 * 125.98832 * 2 1 4 4 C 1.30497 * 109.25213 * 179.97438 * 3 2 1 5 5 N 1.35039 * 108.70247 * 359.77085 * 4 3 2 6 6 H 0.97008 * 126.40008 * 180.26960 * 5 4 3 7 7 C 1.34665 * 125.98677 * 179.97438 * 2 1 3 8 8 C 1.50694 * 126.59279 * 359.96773 * 7 2 1 9 9 N 1.46905 * 109.47373 * 284.00775 * 8 7 2 10 10 C 1.47963 * 110.99983 * 284.52815 * 9 8 7 11 11 C 1.55127 * 105.03002 * 213.83080 * 10 9 8 12 12 C 1.54162 * 101.39727 * 35.81241 * 11 10 9 13 13 C 1.53372 * 111.13060 * 205.17895 * 12 11 10 14 14 C 1.54756 * 101.44296 * 262.18438 * 13 12 11 15 15 N 1.46908 * 105.53500 * 335.68532 * 14 13 12 16 16 C 1.46499 * 124.38223 * 196.81019 * 15 14 13 17 17 C 1.52996 * 109.47321 * 269.98968 * 16 15 14 18 18 C 1.50700 * 109.46871 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00363 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99663 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99762 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47285 * 90.00370 * 22 20 18 24 24 H 1.48501 * 109.46835 * 210.00439 * 22 20 18 25 25 H 1.48501 * 109.47019 * 330.00042 * 22 20 18 26 26 C 1.34832 * 111.24555 * 16.77617 * 15 14 13 27 27 O 1.21285 * 125.18687 * 178.81453 * 26 15 14 28 28 C 1.47756 * 111.00052 * 163.74073 * 9 8 7 29 29 H 1.08995 * 109.46977 * 274.85124 * 1 2 3 30 30 H 1.09001 * 109.46404 * 34.84963 * 1 2 3 31 31 H 1.08998 * 109.46710 * 154.84870 * 1 2 3 32 32 H 1.08005 * 125.64630 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47411 * 164.00806 * 8 7 2 34 34 H 1.08999 * 109.47914 * 44.01085 * 8 7 2 35 35 H 1.09003 * 110.34965 * 332.74969 * 10 9 8 36 36 H 1.09003 * 110.34798 * 94.90703 * 10 9 8 37 37 H 1.09001 * 111.01806 * 153.92378 * 11 10 9 38 38 H 1.09005 * 111.01932 * 277.80681 * 11 10 9 39 39 H 1.09008 * 111.03024 * 20.21842 * 13 12 11 40 40 H 1.08995 * 111.03130 * 144.13709 * 13 12 11 41 41 H 1.09000 * 110.23433 * 216.67077 * 14 13 12 42 42 H 1.09000 * 110.23952 * 94.70313 * 14 13 12 43 43 H 1.09006 * 109.46749 * 29.98752 * 16 15 14 44 44 H 1.08994 * 109.47067 * 149.98134 * 16 15 14 45 45 H 1.09001 * 109.46471 * 299.99153 * 17 16 15 46 46 H 1.09000 * 109.47313 * 59.99429 * 17 16 15 47 47 H 0.97007 * 119.99928 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.97856 * 243.45904 * 28 9 8 49 49 H 1.09000 * 109.98353 * 4.75169 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 0.0006 5 7 3.5913 -0.6401 0.0060 6 1 4.3914 -1.1886 0.0113 7 6 2.2984 -1.0896 0.0005 8 6 1.8472 -2.5275 0.0018 9 7 1.3813 -2.8933 1.3461 10 6 2.5224 -3.0934 2.2666 11 6 2.0694 -4.2220 3.2296 12 6 1.2432 -5.1162 2.2838 13 6 0.2004 -5.9285 3.0615 14 6 0.9246 -7.2870 3.2192 15 7 1.8932 -7.3468 2.1163 16 6 2.5481 -8.5738 1.6560 17 6 3.8528 -8.7764 2.4289 18 6 4.5260 -10.0389 1.9558 19 1 4.0692 -10.6368 1.1810 20 6 5.7258 -10.4302 2.5113 21 7 6.2823 -9.7019 3.4544 22 14 6.5607 -11.9948 1.9244 23 1 7.4717 -11.6763 0.7958 24 1 7.3423 -12.5870 3.0396 25 1 5.5317 -12.9649 1.4714 26 6 2.1011 -6.1265 1.5818 27 8 2.8658 -5.8828 0.6725 28 6 0.5838 -4.1367 1.3100 29 1 -0.3633 0.0869 1.0239 30 1 -0.3632 0.8434 -0.5873 31 1 -0.3633 -0.9302 -0.4368 32 1 4.4004 1.3687 0.0011 33 1 2.6809 -3.1702 -0.2812 34 1 1.0329 -2.6536 -0.7117 35 1 3.4080 -3.4020 1.7110 36 1 2.7251 -2.1785 2.8234 37 1 2.9273 -4.7617 3.6305 38 1 1.4492 -3.8247 4.0332 39 1 -0.0014 -5.4777 4.0333 40 1 -0.7182 -6.0394 2.4854 41 1 0.2105 -8.1065 3.1387 42 1 1.4418 -7.3296 4.1778 43 1 1.8882 -9.4243 1.8279 44 1 2.7654 -8.4921 0.5911 45 1 4.5126 -7.9260 2.2569 46 1 3.6354 -8.8581 3.4938 47 1 7.1265 -9.9769 3.8450 48 1 -0.4398 -3.9318 1.6239 49 1 0.5886 -4.5531 0.3027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272663895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:56 Heat of formation + Delta-G solvation = 1.042469 kcal Electronic energy + Delta-G solvation = -29126.246897 eV Core-core repulsion = 25280.701603 eV Total energy + Delta-G solvation = -3845.545294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.01083 -42.15261 -39.05622 -37.52971 -35.89644 -34.53854 -33.98164 -32.87221 -31.22531 -30.60329 -29.28003 -28.16695 -27.05449 -25.88094 -24.41328 -23.59810 -22.56213 -22.40210 -21.70760 -20.46613 -19.93733 -18.72809 -18.68180 -17.43437 -17.11280 -16.81981 -16.56729 -16.47800 -16.12555 -15.66182 -15.52168 -14.99641 -14.87931 -14.59118 -14.53649 -14.35140 -14.13980 -13.90710 -13.65292 -13.54841 -13.46909 -13.26947 -13.14542 -13.00661 -12.91502 -12.75991 -12.64953 -12.54269 -12.30543 -12.06202 -11.93872 -11.84206 -11.54509 -11.44101 -10.93674 -10.78394 -10.67406 -10.60698 -9.59854 -9.45622 -9.12914 -8.28530 -6.41617 1.08367 1.35820 1.37841 1.48646 1.52799 2.10427 2.17257 2.26601 2.37701 3.01195 3.05118 3.23779 3.42339 3.46739 3.74747 3.88550 3.97861 4.03665 4.09685 4.25257 4.28204 4.32960 4.44318 4.47903 4.48341 4.53341 4.58577 4.62598 4.70641 4.79903 4.81310 4.90123 4.93650 4.98679 5.01026 5.11607 5.16638 5.18345 5.19957 5.28282 5.29235 5.41181 5.55650 5.77613 5.82376 5.87775 5.92854 6.10393 6.27112 6.53870 6.73860 7.16570 7.18087 7.28665 8.83603 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002641 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.388970 B =10600.609157 C =11592.798128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.003 3.997 3 N -0.533 5.533 4 C 0.191 3.809 5 N -0.565 5.565 6 H 0.426 0.574 7 C -0.025 4.025 8 C 0.131 3.869 9 N -0.505 5.505 10 C 0.049 3.951 11 C -0.099 4.099 12 C -0.112 4.112 13 C -0.099 4.099 14 C 0.090 3.910 15 N -0.619 5.619 16 C 0.142 3.858 17 C 0.026 3.974 18 C -0.546 4.546 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.279 1.279 25 H -0.256 1.256 26 C 0.510 3.490 27 O -0.582 6.582 28 C 0.071 3.929 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.241 0.759 33 H 0.028 0.972 34 H 0.104 0.896 35 H 0.020 0.980 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.050 0.950 45 H -0.030 1.030 46 H -0.001 1.001 47 H 0.265 0.735 48 H 0.127 0.873 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.285 15.920 -1.445 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.126 4.126 3 N -0.254 5.254 4 C -0.093 4.093 5 N -0.169 5.169 6 H 0.265 0.735 7 C -0.140 4.140 8 C 0.002 3.998 9 N -0.228 5.228 10 C -0.079 4.079 11 C -0.138 4.138 12 C -0.116 4.116 13 C -0.137 4.137 14 C -0.032 4.032 15 N -0.351 5.351 16 C 0.021 3.979 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.793 3.207 23 H -0.202 1.202 24 H -0.204 1.204 25 H -0.180 1.180 26 C 0.298 3.702 27 O -0.463 6.463 28 C -0.057 4.057 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.257 0.743 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.069 0.931 45 H -0.012 1.012 46 H 0.018 0.982 47 H 0.073 0.927 48 H 0.144 0.856 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.367 17.184 -1.651 23.112 hybrid contribution 2.871 -2.591 -0.560 3.908 sum -12.496 14.593 -2.212 19.339 Atomic orbital electron populations 1.19981 0.86474 1.02469 1.02466 1.20853 0.97533 0.87640 1.06571 1.70183 1.01830 1.31629 1.21788 1.25579 0.97682 0.82260 1.03819 1.43339 1.08316 1.08978 1.56276 0.73478 1.20860 0.84170 0.96480 1.12526 1.20516 0.99442 0.88242 0.91613 1.63888 1.19674 1.31668 1.07578 1.23024 0.92052 0.98430 0.94359 1.22588 0.99405 0.94294 0.97477 1.21816 0.96992 0.95125 0.97708 1.22638 0.96626 0.91570 1.02821 1.22479 0.90952 1.00820 0.88936 1.48792 1.43732 1.07689 1.34870 1.21348 0.94136 0.84996 0.97456 1.19185 0.92294 0.94823 0.94894 1.21553 1.06751 1.08664 1.21452 0.91522 1.26024 0.97905 1.00940 0.94883 1.70111 1.18895 1.40545 1.27683 0.85382 0.78590 0.78814 0.77886 1.20238 1.20424 1.18020 1.21148 0.82165 0.84750 0.82105 1.90633 1.40469 1.82883 1.32314 1.22735 0.99017 0.86441 0.97475 0.91033 0.91906 0.90411 0.74333 0.95389 0.87814 0.96203 0.89827 0.92885 0.85962 0.85686 0.87059 0.88158 0.91634 0.89074 0.93098 1.01188 0.98236 0.92663 0.85553 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.27 71.24 0.73 -0.33 16 2 C 0.00 0.08 7.09 41.39 0.29 0.37 16 3 N -0.53 -13.48 11.25 -188.31 -2.12 -15.60 16 4 C 0.19 3.63 13.04 180.26 2.35 5.98 16 5 N -0.57 -11.02 6.15 -186.50 -1.15 -12.17 16 6 H 0.43 6.77 8.96 -92.70 -0.83 5.94 16 7 C -0.02 -0.56 6.43 40.95 0.26 -0.30 16 8 C 0.13 3.00 4.83 85.55 0.41 3.41 16 9 N -0.50 -10.91 5.12 -891.04 -4.56 -15.47 16 10 C 0.05 1.20 6.31 86.83 0.55 1.75 16 11 C -0.10 -2.24 6.04 31.72 0.19 -2.05 16 12 C -0.11 -2.58 0.66 -52.61 -0.03 -2.61 16 13 C -0.10 -1.49 6.15 31.32 0.19 -1.30 16 14 C 0.09 2.07 7.37 86.90 0.64 2.71 16 15 N -0.62 -21.62 2.95 -818.19 -2.41 -24.03 16 16 C 0.14 6.03 5.88 86.38 0.51 6.54 16 17 C 0.03 1.41 5.30 29.85 0.16 1.57 16 18 C -0.55 -31.30 9.11 25.60 0.23 -31.06 16 19 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 20 C 0.00 0.04 5.46 84.66 0.46 0.50 16 21 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 22 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 C 0.51 18.16 6.59 87.43 0.58 18.74 16 27 O -0.58 -26.27 17.47 -3.05 -0.05 -26.32 16 28 C 0.07 1.40 5.92 86.16 0.51 1.91 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.24 7.38 -2.39 -0.02 1.22 16 32 H 0.24 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.03 0.79 7.66 -2.39 -0.02 0.77 16 34 H 0.10 2.10 7.35 -2.39 -0.02 2.09 16 35 H 0.02 0.60 7.52 -2.39 -0.02 0.58 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.49 8.01 -2.39 -0.02 1.47 16 38 H 0.12 1.93 7.76 -2.38 -0.02 1.91 16 39 H 0.12 1.16 7.63 -2.38 -0.02 1.14 16 40 H 0.11 1.15 7.90 -2.39 -0.02 1.13 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 44 H 0.05 2.32 7.95 -2.39 -0.02 2.30 16 45 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 48 H 0.13 1.64 7.79 -2.38 -0.02 1.62 16 49 H 0.05 1.11 7.15 -2.39 -0.02 1.09 16 Total: -1.00 -81.66 395.86 0.17 -81.49 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.12 Total: 17.14 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 8.04 Total: 5.83 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -9.96 Total: -124.46 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -81.66 0.17 -81.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272663895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.531 kcal (2) G-P(sol) polarization free energy of solvation -81.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds