Wall clock time and date at job start Tue Mar 31 2020 17:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34664 * 126.59372 * 2 1 4 4 N 1.34129 * 108.02244 * 179.81450 * 3 2 1 5 5 C 1.30504 * 109.25708 * 0.37171 * 4 3 2 6 6 C 1.50698 * 125.65296 * 179.89166 * 5 4 3 7 7 N 1.46906 * 109.46945 * 274.69379 * 6 5 4 8 8 C 1.48724 * 110.99745 * 60.85193 * 7 6 5 9 9 C 1.55004 * 103.34962 * 158.81876 * 8 7 6 10 10 C 1.54802 * 102.94223 * 323.04005 * 9 8 7 11 11 C 1.47076 * 110.99659 * 178.00489 * 7 6 5 12 12 C 1.53877 * 110.68455 * 336.03417 * 11 7 6 13 13 C 1.54649 * 101.58012 * 96.22837 * 12 11 7 14 14 N 1.46858 * 105.50500 * 24.75444 * 13 12 11 15 15 C 1.46497 * 124.36646 * 163.39605 * 14 13 12 16 16 C 1.53001 * 109.47320 * 269.72636 * 15 14 13 17 17 C 1.50697 * 109.47382 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99854 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00099 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47232 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47013 * 120.00249 * 21 19 17 24 24 H 1.48498 * 109.47125 * 240.00139 * 21 19 17 25 25 C 1.34669 * 111.26056 * 343.13048 * 14 13 12 26 26 O 1.21284 * 125.07489 * 180.82673 * 25 14 13 27 27 N 1.35046 * 108.69734 * 359.63067 * 5 4 3 28 28 H 0.97002 * 126.40028 * 180.24622 * 27 5 4 29 29 H 1.08999 * 109.47254 * 269.95552 * 1 2 3 30 30 H 1.09004 * 109.46870 * 29.95490 * 1 2 3 31 31 H 1.08999 * 109.47158 * 149.95645 * 1 2 3 32 32 H 1.07993 * 125.98970 * 0.07679 * 3 2 1 33 33 H 1.09001 * 109.47318 * 154.69703 * 6 5 4 34 34 H 1.09004 * 109.47077 * 34.69165 * 6 5 4 35 35 H 1.08999 * 110.64566 * 40.34981 * 8 7 6 36 36 H 1.09003 * 110.78423 * 277.34730 * 8 7 6 37 37 H 1.09006 * 110.71963 * 204.68159 * 9 8 7 38 38 H 1.08998 * 110.72612 * 81.40729 * 9 8 7 39 39 H 1.08996 * 110.37554 * 263.05323 * 10 9 8 40 40 H 1.09009 * 110.36732 * 140.72380 * 10 9 8 41 41 H 1.08997 * 111.00516 * 214.30273 * 12 11 7 42 42 H 1.08995 * 111.00474 * 338.11632 * 12 11 7 43 43 H 1.08999 * 110.24172 * 265.74901 * 13 12 11 44 44 H 1.08999 * 110.23714 * 143.76293 * 13 12 11 45 45 H 1.09003 * 109.47007 * 29.72404 * 15 14 13 46 46 H 1.08996 * 109.47141 * 149.72334 * 15 14 13 47 47 H 1.09002 * 109.46670 * 300.00338 * 16 15 14 48 48 H 1.09008 * 109.46912 * 59.99959 * 16 15 14 49 49 H 0.96999 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0041 5 6 3.5968 -0.6509 -0.0013 6 6 4.8318 -1.5146 -0.0015 7 7 5.3018 -1.6965 -1.3814 8 6 5.6534 -0.3910 -2.0011 9 6 6.6037 -0.7890 -3.1592 10 6 7.4100 -1.9655 -2.5574 11 6 6.5353 -2.4968 -1.4168 12 6 7.2819 -2.4042 -0.0745 13 6 6.7880 -3.6813 0.6443 14 7 6.3947 -4.6069 -0.4259 15 6 6.1960 -6.0467 -0.2425 16 6 7.5148 -6.7799 -0.4961 17 6 7.3103 -8.2610 -0.3080 18 1 6.3369 -8.6414 -0.0353 19 6 8.3655 -9.1306 -0.4850 20 7 9.5506 -8.6675 -0.8175 21 14 8.1118 -10.9666 -0.2526 22 1 6.6974 -11.2281 0.1165 23 1 8.4316 -11.6746 -1.5182 24 1 9.0046 -11.4568 0.8280 25 6 6.2345 -3.9603 -1.5964 26 8 5.8985 -4.4800 -2.6394 27 7 2.3229 -1.0991 -0.0009 28 1 2.0391 -2.0267 -0.0009 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 1.9865 2.1116 0.0012 33 1 4.5959 -2.4860 0.4330 34 1 5.6122 -1.0328 0.5876 35 1 6.1680 0.2486 -1.2841 36 1 4.7635 0.1057 -2.3878 37 1 7.2642 0.0387 -3.4178 38 1 6.0351 -1.1164 -4.0296 39 1 8.3653 -1.6118 -2.1698 40 1 7.5674 -2.7406 -3.3075 41 1 8.3611 -2.4331 -0.2249 42 1 6.9899 -1.5088 0.4741 43 1 5.9310 -3.4505 1.2770 44 1 7.5920 -4.1135 1.2400 45 1 5.8628 -6.2405 0.7771 46 1 5.4420 -6.4018 -0.9449 47 1 7.8480 -6.5860 -1.5156 48 1 8.2688 -6.4247 0.2065 49 1 10.2929 -9.2793 -0.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272907908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:53 Heat of formation + Delta-G solvation = 39.984040 kcal Electronic energy + Delta-G solvation = -29448.492544 eV Core-core repulsion = 25604.635883 eV Total energy + Delta-G solvation = -3843.856661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35203 -41.13579 -37.84989 -35.93116 -33.60575 -33.51196 -32.81837 -31.84154 -31.30688 -29.10166 -28.01901 -27.46194 -25.30521 -24.79006 -23.51659 -21.90419 -21.56247 -21.08583 -20.69105 -20.03481 -18.56957 -17.57446 -17.02411 -16.63742 -15.87350 -15.45433 -15.21532 -15.02984 -14.78707 -14.52836 -14.29788 -14.08750 -13.79661 -13.58242 -13.28660 -13.11144 -12.92611 -12.84723 -12.70007 -12.59598 -12.56666 -12.28603 -12.07961 -11.87167 -11.41851 -11.21710 -11.12463 -10.97869 -10.87197 -10.69605 -10.57151 -10.19418 -10.15603 -10.02811 -9.89620 -9.53312 -9.19174 -8.61368 -8.39822 -8.30843 -8.03136 -6.04554 -4.08038 1.76156 2.72491 2.89356 3.03922 3.28940 3.35856 3.39225 3.47043 3.99314 4.14234 4.32153 4.43568 4.48877 4.60803 4.64887 4.77410 4.82004 4.84426 4.93952 5.13320 5.15304 5.16599 5.17549 5.30515 5.31814 5.48657 5.51270 5.53178 5.57151 5.69937 5.80014 5.83564 5.86005 5.93854 6.00779 6.03906 6.08798 6.22773 6.43460 6.54337 6.65841 6.71621 6.78589 7.00142 7.15721 7.48866 7.65064 7.83038 7.88154 7.95386 8.31553 8.70066 8.98927 9.56208 11.06888 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002818 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.200824 B = 9932.394658 C =10894.934772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.027 4.027 3 C -0.027 4.027 4 N -0.483 5.483 5 C 0.220 3.780 6 C 0.116 3.884 7 N -0.488 5.488 8 C 0.046 3.954 9 C -0.122 4.122 10 C -0.112 4.112 11 C 0.066 3.934 12 C -0.167 4.167 13 C 0.100 3.900 14 N -0.612 5.612 15 C 0.129 3.871 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.537 3.463 26 O -0.518 6.518 27 N -0.554 5.554 28 H 0.420 0.580 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 21.398 3.689 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 C -0.175 4.175 4 N -0.203 5.203 5 C -0.044 4.044 6 C -0.013 4.013 7 N -0.213 5.213 8 C -0.081 4.081 9 C -0.160 4.160 10 C -0.150 4.150 11 C -0.027 4.027 12 C -0.205 4.205 13 C -0.023 4.023 14 N -0.346 5.346 15 C 0.009 3.991 16 C -0.026 4.026 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C 0.321 3.679 26 O -0.392 6.392 27 N -0.157 5.157 28 H 0.258 0.742 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.043 21.238 2.841 24.580 hybrid contribution -0.250 -1.663 0.725 1.831 sum -12.293 19.575 3.566 23.388 Atomic orbital electron populations 1.20217 0.87172 1.03451 1.02677 1.21304 0.94488 0.87176 1.11376 1.22071 0.88320 0.98469 1.08690 1.70218 1.22534 1.07965 1.19592 1.22832 0.85485 0.90780 1.05312 1.20925 0.90974 0.97714 0.91653 1.64603 1.27368 1.13630 1.15708 1.23245 0.99112 0.89875 0.95859 1.22553 0.97692 0.97445 0.98348 1.22306 0.97310 0.98696 0.96698 1.21954 0.90301 0.93951 0.96496 1.23374 1.02076 0.98718 0.96368 1.22104 0.99968 0.89456 0.90818 1.48585 1.67832 1.09032 1.09123 1.21792 1.01379 0.75307 1.00600 1.19408 0.91036 0.94459 0.97711 1.21119 0.95990 0.91446 1.47512 0.92462 1.25002 0.95181 0.99024 0.95078 1.69980 1.00765 1.34824 1.47542 0.86501 0.78234 0.85277 0.77779 1.19676 1.20930 1.20988 1.20007 0.76847 0.87471 0.83549 1.90679 1.46829 1.72772 1.28912 1.43139 1.06904 1.09549 1.56106 0.74248 0.90979 0.89935 0.91662 0.81497 0.88797 0.89922 0.92605 0.89899 0.90706 0.90575 0.90406 0.89654 0.88861 0.88541 0.91783 0.89812 0.91706 0.91142 0.96075 0.96464 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.44 36.00 0.38 -0.06 16 2 C -0.03 -0.25 7.24 -81.60 -0.59 -0.84 16 3 C -0.03 -0.28 11.79 -17.81 -0.21 -0.49 16 4 N -0.48 -5.94 10.80 -10.82 -0.12 -6.05 16 5 C 0.22 2.51 6.90 -155.41 -1.07 1.43 16 6 C 0.12 1.26 4.31 -4.97 -0.02 1.24 16 7 N -0.49 -6.21 5.01 -218.19 -1.09 -7.31 16 8 C 0.05 0.53 5.52 -1.75 -0.01 0.52 16 9 C -0.12 -1.37 7.07 -24.72 -0.17 -1.54 16 10 C -0.11 -1.44 6.19 -25.66 -0.16 -1.60 16 11 C 0.07 0.92 0.80 -132.18 -0.11 0.81 16 12 C -0.17 -1.87 5.67 -25.41 -0.14 -2.01 16 13 C 0.10 1.30 6.66 -2.98 -0.02 1.28 16 14 N -0.61 -10.86 2.94 -172.50 -0.51 -11.37 16 15 C 0.13 2.69 5.88 -4.04 -0.02 2.67 16 16 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.54 10.03 7.05 -11.14 -0.08 9.96 16 26 O -0.52 -11.95 17.13 5.55 0.10 -11.86 16 27 N -0.55 -5.42 6.15 -6.54 -0.04 -5.46 16 28 H 0.42 3.35 8.96 -40.82 -0.37 2.99 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.09 1.00 6.19 -51.93 -0.32 0.68 16 34 H 0.08 0.81 5.44 -51.93 -0.28 0.53 16 35 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 36 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.84 7.38 -51.93 -0.38 0.46 16 40 H 0.08 1.31 7.43 -51.92 -0.39 0.92 16 41 H 0.09 1.01 7.55 -51.93 -0.39 0.62 16 42 H 0.10 0.86 5.29 -51.93 -0.27 0.59 16 43 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -35.36 387.48 -10.65 -46.01 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.75 Total: 1.64 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.79 Total: -1.90 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -1.02 Total: -56.35 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.86 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.36 -10.65 -46.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272907908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.990 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds