Wall clock time and date at job start Tue Mar 31 2020 17:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34664 * 126.59372 * 2 1 4 4 N 1.34129 * 108.02244 * 179.81450 * 3 2 1 5 5 C 1.30504 * 109.25708 * 0.37171 * 4 3 2 6 6 C 1.50698 * 125.65296 * 179.89166 * 5 4 3 7 7 N 1.46906 * 109.46945 * 274.69379 * 6 5 4 8 8 C 1.48724 * 110.99745 * 60.85193 * 7 6 5 9 9 C 1.55004 * 103.34962 * 158.81876 * 8 7 6 10 10 C 1.54802 * 102.94223 * 323.04005 * 9 8 7 11 11 C 1.47076 * 110.99659 * 178.00489 * 7 6 5 12 12 C 1.53877 * 110.68455 * 336.03417 * 11 7 6 13 13 C 1.54649 * 101.58012 * 96.22837 * 12 11 7 14 14 N 1.46858 * 105.50500 * 24.75444 * 13 12 11 15 15 C 1.46497 * 124.36646 * 163.39605 * 14 13 12 16 16 C 1.53001 * 109.47320 * 269.72636 * 15 14 13 17 17 C 1.50697 * 109.47382 * 180.02562 * 16 15 14 18 18 H 1.08008 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99854 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00099 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47232 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47013 * 120.00249 * 21 19 17 24 24 H 1.48498 * 109.47125 * 240.00139 * 21 19 17 25 25 C 1.34669 * 111.26056 * 343.13048 * 14 13 12 26 26 O 1.21284 * 125.07489 * 180.82673 * 25 14 13 27 27 N 1.35046 * 108.69734 * 359.63067 * 5 4 3 28 28 H 0.97002 * 126.40028 * 180.24622 * 27 5 4 29 29 H 1.08999 * 109.47254 * 269.95552 * 1 2 3 30 30 H 1.09004 * 109.46870 * 29.95490 * 1 2 3 31 31 H 1.08999 * 109.47158 * 149.95645 * 1 2 3 32 32 H 1.07993 * 125.98970 * 0.07679 * 3 2 1 33 33 H 1.09001 * 109.47318 * 154.69703 * 6 5 4 34 34 H 1.09004 * 109.47077 * 34.69165 * 6 5 4 35 35 H 1.08999 * 110.64566 * 40.34981 * 8 7 6 36 36 H 1.09003 * 110.78423 * 277.34730 * 8 7 6 37 37 H 1.09006 * 110.71963 * 204.68159 * 9 8 7 38 38 H 1.08998 * 110.72612 * 81.40729 * 9 8 7 39 39 H 1.08996 * 110.37554 * 263.05323 * 10 9 8 40 40 H 1.09009 * 110.36732 * 140.72380 * 10 9 8 41 41 H 1.08997 * 111.00516 * 214.30273 * 12 11 7 42 42 H 1.08995 * 111.00474 * 338.11632 * 12 11 7 43 43 H 1.08999 * 110.24172 * 265.74901 * 13 12 11 44 44 H 1.08999 * 110.23714 * 143.76293 * 13 12 11 45 45 H 1.09003 * 109.47007 * 29.72404 * 15 14 13 46 46 H 1.08996 * 109.47141 * 149.72334 * 15 14 13 47 47 H 1.09002 * 109.46670 * 300.00338 * 16 15 14 48 48 H 1.09008 * 109.46912 * 59.99959 * 16 15 14 49 49 H 0.96999 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0041 5 6 3.5968 -0.6509 -0.0013 6 6 4.8318 -1.5146 -0.0015 7 7 5.3018 -1.6965 -1.3814 8 6 5.6534 -0.3910 -2.0011 9 6 6.6037 -0.7890 -3.1592 10 6 7.4100 -1.9655 -2.5574 11 6 6.5353 -2.4968 -1.4168 12 6 7.2819 -2.4042 -0.0745 13 6 6.7880 -3.6813 0.6443 14 7 6.3947 -4.6069 -0.4259 15 6 6.1960 -6.0467 -0.2425 16 6 7.5148 -6.7799 -0.4961 17 6 7.3103 -8.2610 -0.3080 18 1 6.3369 -8.6414 -0.0353 19 6 8.3655 -9.1306 -0.4850 20 7 9.5506 -8.6675 -0.8175 21 14 8.1118 -10.9666 -0.2526 22 1 6.6974 -11.2281 0.1165 23 1 8.4316 -11.6746 -1.5182 24 1 9.0046 -11.4568 0.8280 25 6 6.2345 -3.9603 -1.5964 26 8 5.8985 -4.4800 -2.6394 27 7 2.3229 -1.0991 -0.0009 28 1 2.0391 -2.0267 -0.0009 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 1.9865 2.1116 0.0012 33 1 4.5959 -2.4860 0.4330 34 1 5.6122 -1.0328 0.5876 35 1 6.1680 0.2486 -1.2841 36 1 4.7635 0.1057 -2.3878 37 1 7.2642 0.0387 -3.4178 38 1 6.0351 -1.1164 -4.0296 39 1 8.3653 -1.6118 -2.1698 40 1 7.5674 -2.7406 -3.3075 41 1 8.3611 -2.4331 -0.2249 42 1 6.9899 -1.5088 0.4741 43 1 5.9310 -3.4505 1.2770 44 1 7.5920 -4.1135 1.2400 45 1 5.8628 -6.2405 0.7771 46 1 5.4420 -6.4018 -0.9449 47 1 7.8480 -6.5860 -1.5156 48 1 8.2688 -6.4247 0.2065 49 1 10.2929 -9.2793 -0.9424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272907908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:51 Heat of formation + Delta-G solvation = 15.022806 kcal Electronic energy + Delta-G solvation = -29449.574945 eV Core-core repulsion = 25604.635883 eV Total energy + Delta-G solvation = -3844.939061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.13086 -42.27924 -39.12957 -37.42151 -35.54065 -34.34408 -33.64317 -33.43683 -32.03726 -30.75685 -29.08309 -28.29332 -26.98562 -25.80709 -24.60227 -23.62378 -22.44166 -21.91867 -21.80002 -21.09209 -19.88201 -18.70036 -18.38586 -18.05008 -17.24465 -16.70886 -16.53220 -16.10053 -16.05542 -15.70198 -15.57728 -15.02783 -14.89008 -14.61229 -14.41543 -14.34224 -14.22083 -13.98728 -13.70157 -13.61504 -13.51368 -13.33901 -13.30077 -13.10605 -12.89959 -12.74531 -12.56082 -12.23179 -12.08938 -11.98748 -11.93486 -11.77960 -11.57303 -11.40040 -10.97699 -10.94256 -10.85947 -10.61487 -9.61548 -9.51050 -9.10730 -8.24782 -6.37358 1.00645 1.37989 1.39646 1.51623 1.53492 2.01342 2.14123 2.18771 2.40215 2.99524 3.08967 3.21243 3.30387 3.54227 3.66486 3.81293 3.88947 3.98415 4.11384 4.18310 4.20291 4.28992 4.33841 4.37752 4.51450 4.55412 4.61117 4.65649 4.67175 4.77603 4.82299 4.87017 4.87734 4.93933 4.96609 5.03441 5.10714 5.13120 5.22178 5.31420 5.36922 5.44559 5.57886 5.70854 5.78945 5.83105 5.88518 6.14665 6.28156 6.45323 6.78305 7.11278 7.23273 7.32622 8.87561 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002818 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.200824 B = 9932.394658 C =10894.934772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.021 4.021 3 C -0.052 4.052 4 N -0.503 5.503 5 C 0.202 3.798 6 C 0.120 3.880 7 N -0.505 5.505 8 C 0.057 3.943 9 C -0.116 4.116 10 C -0.115 4.115 11 C 0.075 3.925 12 C -0.154 4.154 13 C 0.093 3.907 14 N -0.616 5.616 15 C 0.144 3.856 16 C 0.024 3.976 17 C -0.543 4.543 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.282 1.282 24 H -0.273 1.273 25 C 0.522 3.478 26 O -0.577 6.577 27 N -0.555 5.555 28 H 0.426 0.574 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.050 0.950 47 H -0.028 1.028 48 H 0.003 0.997 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 22.591 5.703 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C -0.200 4.200 4 N -0.223 5.223 5 C -0.062 4.062 6 C -0.008 4.008 7 N -0.231 5.231 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.018 4.018 12 C -0.192 4.192 13 C -0.029 4.029 14 N -0.348 5.348 15 C 0.022 3.978 16 C -0.014 4.014 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.793 3.207 22 H -0.182 1.182 23 H -0.208 1.208 24 H -0.198 1.198 25 C 0.309 3.691 26 O -0.455 6.455 27 N -0.159 5.159 28 H 0.265 0.735 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.069 0.931 47 H -0.010 1.010 48 H 0.021 0.979 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.083 22.464 4.898 26.453 hybrid contribution 0.023 -2.005 0.069 2.006 sum -13.060 20.459 4.966 24.775 Atomic orbital electron populations 1.20335 0.84764 1.04407 1.03780 1.21848 0.95938 0.86569 1.09397 1.22487 0.88097 0.99760 1.09617 1.70158 1.23675 1.08450 1.20048 1.22867 0.86068 0.90793 1.06433 1.20936 0.91344 0.97902 0.90628 1.64479 1.26971 1.14259 1.17367 1.23154 0.98687 0.89241 0.95909 1.22540 0.97707 0.97500 0.97626 1.22354 0.98742 0.98368 0.95884 1.21772 0.91207 0.90554 0.98299 1.23415 1.02148 0.99045 0.94590 1.22462 1.01440 0.89095 0.89901 1.48656 1.67322 1.08285 1.10573 1.21353 0.97814 0.77152 1.01452 1.19213 0.93211 0.94756 0.94234 1.21573 0.96488 0.92679 1.47442 0.91566 1.26007 0.94772 1.04489 0.94509 1.70117 1.01799 1.36822 1.48467 0.85337 0.78927 0.78589 0.77819 1.18250 1.20842 1.19845 1.21000 0.75547 0.89828 0.82739 1.90627 1.49368 1.74486 1.31032 1.43223 1.06745 1.10161 1.55735 0.73510 0.89690 0.88539 0.91144 0.79866 0.88732 0.88321 0.91119 0.90926 0.87909 0.92341 0.87799 0.93122 0.88158 0.85181 0.88555 0.89674 0.88916 0.93105 1.00951 0.97878 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.44 71.23 0.74 0.07 16 2 C -0.02 -0.34 7.24 40.95 0.30 -0.04 16 3 C -0.05 -1.00 11.79 83.52 0.98 -0.01 16 4 N -0.50 -11.52 10.80 -188.14 -2.03 -13.55 16 5 C 0.20 4.28 6.90 138.13 0.95 5.23 16 6 C 0.12 2.36 4.31 85.56 0.37 2.73 16 7 N -0.50 -12.31 5.01 -844.22 -4.23 -16.53 16 8 C 0.06 1.21 5.52 86.64 0.48 1.69 16 9 C -0.12 -2.48 7.07 31.89 0.23 -2.25 16 10 C -0.12 -2.94 6.19 31.29 0.19 -2.75 16 11 C 0.07 2.02 0.80 3.06 0.00 2.02 16 12 C -0.15 -3.06 5.67 31.45 0.18 -2.88 16 13 C 0.09 2.23 6.66 86.87 0.58 2.81 16 14 N -0.62 -22.06 2.94 -818.12 -2.41 -24.46 16 15 C 0.14 6.13 5.88 86.38 0.51 6.63 16 16 C 0.02 1.29 5.30 29.85 0.16 1.45 16 17 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 18 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 19 C 0.00 0.02 5.46 84.65 0.46 0.48 16 20 N -0.93 -57.55 13.29 21.45 0.28 -57.26 16 21 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.52 20.17 7.05 87.61 0.62 20.79 16 26 O -0.58 -28.42 17.13 -3.04 -0.05 -28.47 16 27 N -0.55 -10.05 6.15 -174.60 -1.07 -11.13 16 28 H 0.43 6.30 8.96 -92.71 -0.83 5.47 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 33 H 0.09 1.81 6.19 -2.39 -0.01 1.79 16 34 H 0.10 1.58 5.44 -2.38 -0.01 1.56 16 35 H 0.07 1.31 7.97 -2.39 -0.02 1.30 16 36 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 2.07 7.38 -2.39 -0.02 2.05 16 40 H 0.05 1.65 7.43 -2.38 -0.02 1.63 16 41 H 0.10 1.91 7.55 -2.39 -0.02 1.89 16 42 H 0.13 1.76 5.29 -2.39 -0.01 1.75 16 43 H 0.10 1.74 6.42 -2.39 -0.02 1.72 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 47 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 48 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 49 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.08 387.48 -0.37 -81.45 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.13 Total: 18.39 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.98 Total: 5.02 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -9.46 Total: -122.94 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.47 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -81.08 -0.37 -81.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272907908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.469 kcal (2) G-P(sol) polarization free energy of solvation -81.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds