Wall clock time and date at job start Tue Mar 31 2020 17:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.58989 * 2 1 4 4 N 1.34117 * 108.02039 * 179.74333 * 3 2 1 5 5 C 1.30500 * 109.25901 * 0.36556 * 4 3 2 6 6 C 1.50701 * 125.65302 * 179.89609 * 5 4 3 7 7 N 1.46904 * 109.46893 * 274.45447 * 6 5 4 8 8 C 1.48056 * 111.00230 * 66.03090 * 7 6 5 9 9 C 1.54253 * 106.83432 * 146.60848 * 8 7 6 10 10 C 1.54365 * 104.92656 * 358.49109 * 9 8 7 11 11 H 1.09001 * 110.04037 * 94.72206 * 10 9 8 12 12 C 1.48932 * 110.99565 * 183.05038 * 7 6 5 13 13 H 1.08997 * 112.07488 * 78.74237 * 12 7 6 14 14 C 1.53107 * 107.98939 * 314.48522 * 12 7 6 15 15 C 1.53057 * 109.26210 * 184.24079 * 14 12 7 16 16 C 1.50313 * 109.43175 * 52.14008 * 15 14 12 17 17 O 1.21274 * 118.67754 * 159.18719 * 16 15 14 18 18 N 1.33329 * 122.64067 * 339.17427 * 16 15 14 19 19 C 1.46502 * 117.35632 * 180.31328 * 18 16 15 20 20 C 1.53002 * 109.46895 * 269.96938 * 19 18 16 21 21 C 1.50697 * 109.46938 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00014 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99769 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00049 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99859 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00562 * 25 23 21 27 27 H 1.48501 * 109.47074 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47318 * 300.00448 * 25 23 21 29 29 N 1.35040 * 108.69569 * 359.63236 * 5 4 3 30 30 H 0.97004 * 126.39205 * 180.25068 * 29 5 4 31 31 H 1.09006 * 109.47418 * 270.04207 * 1 2 3 32 32 H 1.08997 * 109.47627 * 30.04665 * 1 2 3 33 33 H 1.09003 * 109.47100 * 150.04801 * 1 2 3 34 34 H 1.07999 * 125.98754 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47510 * 154.45145 * 6 5 4 36 36 H 1.09006 * 109.46798 * 34.45238 * 6 5 4 37 37 H 1.09004 * 109.98660 * 27.26398 * 8 7 6 38 38 H 1.08997 * 109.98489 * 265.95550 * 8 7 6 39 39 H 1.09005 * 110.36667 * 117.38533 * 9 8 7 40 40 H 1.08997 * 110.36953 * 239.59888 * 9 8 7 41 41 H 1.09001 * 109.51552 * 304.05318 * 14 12 7 42 42 H 1.08995 * 109.51679 * 64.21857 * 14 12 7 43 43 H 1.09000 * 109.47228 * 292.16166 * 15 14 12 44 44 H 1.08997 * 109.49348 * 172.13944 * 15 14 12 45 45 H 1.08998 * 109.47356 * 29.97733 * 19 18 16 46 46 H 1.09008 * 109.46570 * 149.97482 * 19 18 16 47 47 H 1.08998 * 109.47249 * 300.00446 * 20 19 18 48 48 H 1.09002 * 109.46666 * 60.00733 * 20 19 18 49 49 H 0.96999 * 119.99763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 0.0057 5 6 3.5968 -0.6507 0.0014 6 6 4.8318 -1.5143 0.0032 7 7 5.3000 -1.7021 -1.3765 8 6 5.7655 -0.4224 -1.9577 9 6 6.9282 -0.7622 -2.9127 10 6 7.1037 -2.2915 -2.7971 11 1 6.5441 -2.7925 -3.5871 12 6 6.4783 -2.6119 -1.4210 13 1 6.1902 -3.6597 -1.3364 14 6 7.4481 -2.1840 -0.3162 15 6 8.7187 -3.0329 -0.4031 16 6 9.2581 -2.9836 -1.8053 17 8 10.4247 -3.2587 -1.9900 18 7 8.5055 -2.6499 -2.8540 19 6 9.1487 -2.6462 -4.1703 20 6 9.7340 -1.2600 -4.4480 21 6 10.3950 -1.2560 -5.8022 22 1 10.3972 -2.1524 -6.4048 23 6 10.9971 -0.1081 -6.2720 24 7 10.9950 0.9832 -5.5380 25 14 11.8160 -0.1029 -7.9509 26 1 10.8107 -0.4328 -8.9929 27 1 12.3852 1.2421 -8.2199 28 1 12.9035 -1.1139 -7.9745 29 7 2.3230 -1.0989 0.0009 30 1 2.0393 -2.0266 0.0015 31 1 -0.3634 0.0008 1.0277 32 1 -0.3634 0.8895 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 1.9864 2.1117 -0.0004 35 1 4.5967 -2.4838 0.4422 36 1 5.6130 -1.0299 0.5892 37 1 6.1149 0.2409 -1.1665 38 1 4.9551 0.0520 -2.5112 39 1 6.6720 -0.4860 -3.9356 40 1 7.8384 -0.2511 -2.5992 41 1 7.7056 -1.1326 -0.4448 42 1 6.9784 -2.3283 0.6566 43 1 8.4852 -4.0645 -0.1397 44 1 9.4656 -2.6415 0.2876 45 1 9.9474 -3.3878 -4.1866 46 1 8.4115 -2.8893 -4.9355 47 1 8.9353 -0.5185 -4.4317 48 1 10.4711 -1.0170 -3.6827 49 1 11.4189 1.7906 -5.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272908352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:59 Heat of formation + Delta-G solvation = 30.220928 kcal Electronic energy + Delta-G solvation = -29329.578319 eV Core-core repulsion = 25485.298298 eV Total energy + Delta-G solvation = -3844.280021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32169 -40.89632 -38.47935 -35.40457 -33.79636 -32.97175 -32.76494 -32.41108 -30.96145 -29.33054 -28.29657 -27.16264 -25.06103 -24.91272 -23.71164 -21.88484 -21.45729 -21.01162 -20.66945 -20.11857 -18.01345 -17.43549 -16.61362 -16.48633 -16.22178 -15.87281 -15.22761 -15.06323 -14.62564 -14.50486 -14.37903 -14.13018 -13.96223 -13.46508 -13.24361 -13.18970 -13.06802 -12.87070 -12.62531 -12.46953 -12.27512 -12.27128 -11.73903 -11.62458 -11.50299 -11.37008 -11.21285 -10.88384 -10.79406 -10.65336 -10.47028 -10.18867 -10.12579 -9.78091 -9.77632 -9.29605 -8.97857 -8.69935 -8.37062 -8.29383 -8.02191 -5.95762 -3.98124 1.75006 2.79244 2.89602 3.10025 3.36926 3.40777 3.42232 3.47434 3.91131 4.22617 4.39018 4.50471 4.51531 4.67187 4.70456 4.77579 4.78350 4.94844 5.10396 5.13839 5.17990 5.26193 5.29172 5.35639 5.37446 5.40693 5.46740 5.49349 5.55048 5.73495 5.73943 5.84279 5.97173 6.01780 6.12671 6.21290 6.29158 6.39890 6.54584 6.59889 6.68134 6.71289 6.92285 6.98288 7.14338 7.70048 7.79641 7.90798 8.05148 8.10110 8.42632 8.70233 9.08174 9.65067 11.15624 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.002853 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.908749 B = 9810.819616 C =11102.322880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.030 4.030 3 C -0.024 4.024 4 N -0.480 5.480 5 C 0.220 3.780 6 C 0.126 3.874 7 N -0.508 5.508 8 C 0.045 3.955 9 C -0.143 4.143 10 C 0.152 3.848 11 H 0.093 0.907 12 C 0.060 3.940 13 H 0.106 0.894 14 C -0.153 4.153 15 C -0.130 4.130 16 C 0.510 3.490 17 O -0.547 6.547 18 N -0.590 5.590 19 C 0.108 3.892 20 C 0.014 3.986 21 C -0.519 4.519 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 N -0.557 5.557 30 H 0.417 0.583 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.022 0.978 48 H 0.019 0.981 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.379 -6.070 15.043 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.173 4.173 4 N -0.200 5.200 5 C -0.044 4.044 6 C -0.003 4.003 7 N -0.232 5.232 8 C -0.083 4.083 9 C -0.183 4.183 10 C 0.046 3.954 11 H 0.111 0.889 12 C -0.048 4.048 13 H 0.124 0.876 14 C -0.191 4.191 15 C -0.170 4.170 16 C 0.298 3.702 17 O -0.425 6.425 18 N -0.321 5.321 19 C -0.013 4.013 20 C -0.024 4.024 21 C -0.558 4.558 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 N -0.160 5.160 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.038 0.962 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.475 -5.677 14.685 26.627 hybrid contribution 0.119 -0.307 -0.490 0.591 sum -21.356 -5.984 14.194 26.331 Atomic orbital electron populations 1.20205 0.87199 1.03423 1.02576 1.21273 0.94408 0.87227 1.11686 1.22110 0.88313 0.98572 1.08265 1.70246 1.22515 1.08111 1.19090 1.22889 0.85410 0.90871 1.05267 1.20567 0.91004 0.97128 0.91629 1.65044 1.30618 1.11143 1.16376 1.22910 0.97213 0.90430 0.97699 1.23010 0.98649 0.95684 1.00912 1.21349 0.81649 0.95677 0.96689 0.88922 1.23129 0.89064 0.97977 0.94654 0.87575 1.22284 0.95881 1.01460 0.99503 1.21583 0.98227 1.02089 0.95150 1.19946 0.86275 0.77343 0.86685 1.90737 1.16692 1.49489 1.85564 1.47178 1.09457 1.66212 1.09233 1.21955 0.96747 1.02376 0.80191 1.19408 0.96136 0.90080 0.96758 1.21069 1.35826 0.96878 1.02061 0.92722 1.24978 0.96203 0.95627 0.97431 1.69957 1.44513 1.01471 1.37298 0.86650 0.79827 0.77060 0.84406 1.20259 1.21328 1.20220 1.43085 1.06888 1.09294 1.56746 0.74535 0.91075 0.89910 0.91775 0.81508 0.89240 0.90557 0.92461 0.90318 0.89985 0.89817 0.90363 0.90537 0.88790 0.88402 0.90695 0.92045 0.95991 0.96229 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.00 0.38 0.01 16 2 C -0.03 -0.25 7.24 -81.60 -0.59 -0.84 16 3 C -0.02 -0.26 11.79 -17.82 -0.21 -0.47 16 4 N -0.48 -6.10 11.01 -10.82 -0.12 -6.22 16 5 C 0.22 2.29 7.10 -155.42 -1.10 1.19 16 6 C 0.13 1.13 4.46 -4.97 -0.02 1.10 16 7 N -0.51 -5.37 5.28 -223.63 -1.18 -6.55 16 8 C 0.05 0.59 5.13 -2.53 -0.01 0.57 16 9 C -0.14 -2.18 4.55 -25.36 -0.12 -2.30 16 10 C 0.15 2.15 3.19 -67.33 -0.22 1.93 16 11 H 0.09 1.26 8.02 -51.93 -0.42 0.84 16 12 C 0.06 0.64 3.47 -65.74 -0.23 0.41 16 13 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.15 -1.60 4.02 -26.65 -0.11 -1.71 16 15 C -0.13 -1.61 6.08 -28.04 -0.17 -1.79 16 16 C 0.51 9.25 7.47 -11.82 -0.09 9.16 16 17 O -0.55 -12.59 16.20 5.56 0.09 -12.50 16 18 N -0.59 -10.43 2.45 -166.19 -0.41 -10.84 16 19 C 0.11 2.33 5.06 -4.04 -0.02 2.31 16 20 C 0.01 0.37 5.00 -27.88 -0.14 0.23 16 21 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 22 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 25 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 N -0.56 -4.51 6.15 -6.54 -0.04 -4.55 16 30 H 0.42 2.16 8.96 -40.82 -0.37 1.80 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.71 6.22 -51.93 -0.32 0.39 16 37 H 0.06 0.78 7.33 -51.93 -0.38 0.40 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.08 1.51 7.41 -51.93 -0.38 1.13 16 41 H 0.08 0.97 6.57 -51.93 -0.34 0.63 16 42 H 0.08 0.60 6.59 -51.93 -0.34 0.26 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.74 7.14 -51.93 -0.37 1.37 16 46 H 0.06 1.21 7.91 -51.92 -0.41 0.80 16 47 H 0.02 0.59 6.28 -51.93 -0.33 0.26 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -35.91 382.73 -11.09 -47.00 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.85 Total: 1.25 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.06 Total: -3.84 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -1.01 Total: -54.79 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.91 -11.09 -47.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272908352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.219 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds