Wall clock time and date at job start Tue Mar 31 2020 17:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.58989 * 2 1 4 4 N 1.34117 * 108.02039 * 179.74333 * 3 2 1 5 5 C 1.30500 * 109.25901 * 0.36556 * 4 3 2 6 6 C 1.50701 * 125.65302 * 179.89609 * 5 4 3 7 7 N 1.46904 * 109.46893 * 274.45447 * 6 5 4 8 8 C 1.48056 * 111.00230 * 66.03090 * 7 6 5 9 9 C 1.54253 * 106.83432 * 146.60848 * 8 7 6 10 10 C 1.54365 * 104.92656 * 358.49109 * 9 8 7 11 11 H 1.09001 * 110.04037 * 94.72206 * 10 9 8 12 12 C 1.48932 * 110.99565 * 183.05038 * 7 6 5 13 13 H 1.08997 * 112.07488 * 78.74237 * 12 7 6 14 14 C 1.53107 * 107.98939 * 314.48522 * 12 7 6 15 15 C 1.53057 * 109.26210 * 184.24079 * 14 12 7 16 16 C 1.50313 * 109.43175 * 52.14008 * 15 14 12 17 17 O 1.21274 * 118.67754 * 159.18719 * 16 15 14 18 18 N 1.33329 * 122.64067 * 339.17427 * 16 15 14 19 19 C 1.46502 * 117.35632 * 180.31328 * 18 16 15 20 20 C 1.53002 * 109.46895 * 269.96938 * 19 18 16 21 21 C 1.50697 * 109.46938 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00014 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99769 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00049 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99859 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 60.00562 * 25 23 21 27 27 H 1.48501 * 109.47074 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47318 * 300.00448 * 25 23 21 29 29 N 1.35040 * 108.69569 * 359.63236 * 5 4 3 30 30 H 0.97004 * 126.39205 * 180.25068 * 29 5 4 31 31 H 1.09006 * 109.47418 * 270.04207 * 1 2 3 32 32 H 1.08997 * 109.47627 * 30.04665 * 1 2 3 33 33 H 1.09003 * 109.47100 * 150.04801 * 1 2 3 34 34 H 1.07999 * 125.98754 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47510 * 154.45145 * 6 5 4 36 36 H 1.09006 * 109.46798 * 34.45238 * 6 5 4 37 37 H 1.09004 * 109.98660 * 27.26398 * 8 7 6 38 38 H 1.08997 * 109.98489 * 265.95550 * 8 7 6 39 39 H 1.09005 * 110.36667 * 117.38533 * 9 8 7 40 40 H 1.08997 * 110.36953 * 239.59888 * 9 8 7 41 41 H 1.09001 * 109.51552 * 304.05318 * 14 12 7 42 42 H 1.08995 * 109.51679 * 64.21857 * 14 12 7 43 43 H 1.09000 * 109.47228 * 292.16166 * 15 14 12 44 44 H 1.08997 * 109.49348 * 172.13944 * 15 14 12 45 45 H 1.08998 * 109.47356 * 29.97733 * 19 18 16 46 46 H 1.09008 * 109.46570 * 149.97482 * 19 18 16 47 47 H 1.08998 * 109.47249 * 300.00446 * 20 19 18 48 48 H 1.09002 * 109.46666 * 60.00733 * 20 19 18 49 49 H 0.96999 * 119.99763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6542 0.0057 5 6 3.5968 -0.6507 0.0014 6 6 4.8318 -1.5143 0.0032 7 7 5.3000 -1.7021 -1.3765 8 6 5.7655 -0.4224 -1.9577 9 6 6.9282 -0.7622 -2.9127 10 6 7.1037 -2.2915 -2.7971 11 1 6.5441 -2.7925 -3.5871 12 6 6.4783 -2.6119 -1.4210 13 1 6.1902 -3.6597 -1.3364 14 6 7.4481 -2.1840 -0.3162 15 6 8.7187 -3.0329 -0.4031 16 6 9.2581 -2.9836 -1.8053 17 8 10.4247 -3.2587 -1.9900 18 7 8.5055 -2.6499 -2.8540 19 6 9.1487 -2.6462 -4.1703 20 6 9.7340 -1.2600 -4.4480 21 6 10.3950 -1.2560 -5.8022 22 1 10.3972 -2.1524 -6.4048 23 6 10.9971 -0.1081 -6.2720 24 7 10.9950 0.9832 -5.5380 25 14 11.8160 -0.1029 -7.9509 26 1 10.8107 -0.4328 -8.9929 27 1 12.3852 1.2421 -8.2199 28 1 12.9035 -1.1139 -7.9745 29 7 2.3230 -1.0989 0.0009 30 1 2.0393 -2.0266 0.0015 31 1 -0.3634 0.0008 1.0277 32 1 -0.3634 0.8895 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 1.9864 2.1117 -0.0004 35 1 4.5967 -2.4838 0.4422 36 1 5.6130 -1.0299 0.5892 37 1 6.1149 0.2409 -1.1665 38 1 4.9551 0.0520 -2.5112 39 1 6.6720 -0.4860 -3.9356 40 1 7.8384 -0.2511 -2.5992 41 1 7.7056 -1.1326 -0.4448 42 1 6.9784 -2.3283 0.6566 43 1 8.4852 -4.0645 -0.1397 44 1 9.4656 -2.6415 0.2876 45 1 9.9474 -3.3878 -4.1866 46 1 8.4115 -2.8893 -4.9355 47 1 8.9353 -0.5185 -4.4317 48 1 10.4711 -1.0170 -3.6827 49 1 11.4189 1.7906 -5.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272908352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:58 Heat of formation + Delta-G solvation = 4.172693 kcal Electronic energy + Delta-G solvation = -29330.707855 eV Core-core repulsion = 25485.298298 eV Total energy + Delta-G solvation = -3845.409557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02263 -42.10365 -39.76864 -36.92379 -35.35759 -34.34020 -33.71733 -33.37516 -31.98412 -31.06030 -29.31563 -28.03364 -26.93288 -25.66887 -24.95671 -23.51596 -22.35070 -22.17169 -21.78764 -20.98140 -19.21123 -18.56498 -18.20427 -17.82963 -17.35076 -17.21510 -16.62283 -16.25710 -16.04136 -15.59358 -15.43029 -15.03919 -14.92923 -14.71008 -14.51605 -14.33269 -14.12424 -13.91043 -13.62815 -13.53250 -13.42103 -13.27395 -13.07672 -13.00580 -12.84309 -12.74461 -12.55805 -12.46686 -12.31619 -11.96244 -11.84727 -11.70987 -11.62763 -11.36905 -10.91528 -10.86426 -10.58305 -10.54914 -9.62577 -9.56381 -9.08894 -8.22648 -6.34717 1.07918 1.36804 1.41413 1.48766 1.66705 1.99586 2.19065 2.25533 2.40477 3.00331 3.10570 3.36361 3.44091 3.61342 3.73312 3.82212 4.06431 4.09777 4.11973 4.21124 4.24293 4.35540 4.36566 4.41645 4.44231 4.49622 4.65950 4.69153 4.76236 4.80394 4.83175 4.86458 4.89728 4.92406 4.96331 5.05118 5.06310 5.15076 5.27229 5.31397 5.39509 5.47855 5.61223 5.67529 5.81535 5.83970 5.90563 6.18318 6.59600 6.63519 6.80831 7.20626 7.25714 7.34268 8.89161 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.002853 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.908749 B = 9810.819616 C =11102.322880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.063 4.063 4 N -0.523 5.523 5 C 0.206 3.794 6 C 0.126 3.874 7 N -0.498 5.498 8 C 0.064 3.936 9 C -0.140 4.140 10 C 0.144 3.856 11 H 0.106 0.894 12 C 0.075 3.925 13 H 0.145 0.855 14 C -0.147 4.147 15 C -0.117 4.117 16 C 0.498 3.502 17 O -0.606 6.606 18 N -0.587 5.587 19 C 0.122 3.878 20 C 0.028 3.972 21 C -0.544 4.544 22 H 0.063 0.937 23 C 0.000 4.000 24 N -0.933 5.933 25 Si 0.968 3.032 26 H -0.260 1.260 27 H -0.283 1.283 28 H -0.270 1.270 29 N -0.546 5.546 30 H 0.433 0.567 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.172 0.828 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.120 0.880 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.009 0.991 48 H -0.032 1.032 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.137 -8.466 15.836 30.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.210 4.210 4 N -0.244 5.244 5 C -0.058 4.058 6 C -0.003 4.003 7 N -0.222 5.222 8 C -0.064 4.064 9 C -0.180 4.180 10 C 0.040 3.960 11 H 0.124 0.876 12 C -0.033 4.033 13 H 0.163 0.837 14 C -0.186 4.186 15 C -0.157 4.157 16 C 0.288 3.712 17 O -0.489 6.489 18 N -0.316 5.316 19 C 0.000 4.000 20 C -0.010 4.010 21 C -0.582 4.582 22 H 0.081 0.919 23 C -0.198 4.198 24 N -0.573 5.573 25 Si 0.792 3.208 26 H -0.184 1.184 27 H -0.208 1.208 28 H -0.195 1.195 29 N -0.151 5.151 30 H 0.273 0.727 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.189 0.811 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.027 0.973 48 H -0.013 1.013 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.294 -8.094 15.496 29.930 hybrid contribution 0.939 0.517 -0.713 1.288 sum -23.355 -7.578 14.782 28.660 Atomic orbital electron populations 1.20327 0.84544 1.04488 1.03791 1.21751 0.95867 0.86596 1.09015 1.22409 0.88408 0.99826 1.10405 1.70171 1.23984 1.09849 1.20391 1.23062 0.86596 0.90511 1.05668 1.20740 0.90344 0.98982 0.90194 1.65063 1.29944 1.09288 1.17923 1.22595 0.95450 0.91698 0.96698 1.22858 0.97960 0.96797 1.00364 1.21639 0.79789 0.94457 1.00134 0.87609 1.23193 0.88595 0.99750 0.91770 0.83737 1.22301 0.95142 0.99434 1.01688 1.21595 0.98837 1.04834 0.90418 1.21153 0.85559 0.75660 0.88824 1.90705 1.19379 1.52114 1.86662 1.47177 1.10889 1.65749 1.07806 1.21491 0.96941 0.98431 0.83172 1.19189 0.94391 0.92786 0.94624 1.21548 1.36238 0.97383 1.03068 0.91889 1.26002 0.96752 0.95076 1.01973 1.70113 1.45423 1.02228 1.39510 0.85460 0.78951 0.77275 0.79117 1.18445 1.20819 1.19523 1.43054 1.06127 1.10105 1.55816 0.72662 0.89662 0.89248 0.90310 0.81063 0.85130 0.90838 0.93530 0.91488 0.91870 0.93704 0.93060 0.86210 0.84901 0.88215 0.92672 0.89909 0.97312 1.01321 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.44 71.24 0.74 0.24 16 2 C -0.02 -0.22 7.24 40.95 0.30 0.07 16 3 C -0.06 -1.32 11.79 83.53 0.98 -0.33 16 4 N -0.52 -13.14 11.01 -188.14 -2.07 -15.21 16 5 C 0.21 3.88 7.10 138.13 0.98 4.86 16 6 C 0.13 1.82 4.46 85.56 0.38 2.20 16 7 N -0.50 -9.24 5.28 -861.43 -4.55 -13.79 16 8 C 0.06 1.68 5.13 86.51 0.44 2.12 16 9 C -0.14 -4.52 4.55 31.48 0.14 -4.38 16 10 C 0.14 3.98 3.19 46.29 0.15 4.13 16 11 H 0.11 2.69 8.02 -2.39 -0.02 2.67 16 12 C 0.07 1.35 3.47 45.07 0.16 1.51 16 13 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.15 -2.67 4.02 30.65 0.12 -2.55 16 15 C -0.12 -2.64 6.08 29.75 0.18 -2.46 16 16 C 0.50 18.28 7.47 87.76 0.66 18.93 16 17 O -0.61 -29.19 16.20 -3.01 -0.05 -29.24 16 18 N -0.59 -21.18 2.45 -798.89 -1.96 -23.14 16 19 C 0.12 5.48 5.06 86.38 0.44 5.92 16 20 C 0.03 1.58 5.00 29.85 0.15 1.73 16 21 C -0.54 -32.48 9.11 25.60 0.23 -32.25 16 22 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 23 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 24 N -0.93 -59.51 13.29 21.45 0.28 -59.23 16 25 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 N -0.55 -7.31 6.15 -174.61 -1.07 -8.38 16 30 H 0.43 2.80 8.96 -92.71 -0.83 1.97 16 31 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.15 6.22 -2.38 -0.01 1.14 16 37 H 0.05 1.32 7.33 -2.38 -0.02 1.31 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.06 2.21 8.08 -2.38 -0.02 2.19 16 40 H 0.04 1.78 7.41 -2.39 -0.02 1.76 16 41 H 0.05 1.24 6.57 -2.39 -0.02 1.23 16 42 H 0.12 1.26 6.59 -2.39 -0.02 1.24 16 43 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 2.68 7.14 -2.39 -0.02 2.67 16 46 H 0.08 3.31 7.91 -2.38 -0.02 3.29 16 47 H 0.01 0.50 6.28 -2.39 -0.02 0.48 16 48 H -0.03 -2.08 8.14 -2.39 -0.02 -2.10 16 49 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -85.69 382.73 -0.75 -86.44 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.13 Total: 14.22 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.52 Total: 0.19 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -9.37 Total: -119.74 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -85.69 -0.75 -86.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272908352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.610 kcal (2) G-P(sol) polarization free energy of solvation -85.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds