Wall clock time and date at job start Tue Mar 31 2020 21:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46961 * 2 1 4 4 N 1.31928 * 120.17523 * 96.25900 * 3 2 1 5 5 N 1.28274 * 122.32672 * 180.27761 * 4 3 2 6 6 C 1.31919 * 122.51688 * 359.72241 * 5 4 3 7 7 C 1.50707 * 120.01586 * 180.02562 * 6 5 4 8 8 C 1.38505 * 119.96936 * 359.97438 * 6 5 4 9 9 C 1.39722 * 120.17268 * 275.99911 * 3 2 1 10 10 C 1.48138 * 121.14350 * 0.02562 * 9 3 2 11 11 O 1.21511 * 120.00021 * 4.61048 * 10 9 3 12 12 N 1.34780 * 120.00000 * 184.61312 * 10 9 3 13 13 C 1.46503 * 119.99810 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.45895 * 34.97679 * 13 12 10 15 15 C 1.53040 * 109.46070 * 274.99880 * 13 12 10 16 16 C 1.53192 * 109.31098 * 178.61669 * 15 13 12 17 17 N 1.46923 * 108.77461 * 54.63335 * 16 15 13 18 18 C 1.36944 * 120.62464 * 126.37285 * 17 16 15 19 19 H 1.07993 * 120.00405 * 331.96306 * 18 17 16 20 20 C 1.38812 * 119.99646 * 151.97297 * 18 17 16 21 21 N 1.31620 * 120.00028 * 342.53295 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 162.81936 * 20 18 17 23 23 H 1.48498 * 109.47430 * 89.99640 * 22 20 18 24 24 H 1.48505 * 109.47127 * 209.99239 * 22 20 18 25 25 H 1.48496 * 109.47382 * 329.99236 * 22 20 18 26 26 C 1.46924 * 118.74496 * 306.64362 * 17 16 15 27 27 C 1.52760 * 109.00474 * 53.30694 * 26 17 16 28 28 H 1.09004 * 109.38536 * 65.51587 * 27 26 17 29 29 C 1.53001 * 109.56710 * 185.55498 * 27 26 17 30 30 H 1.09004 * 109.47483 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.47431 * 60.00217 * 1 2 3 32 32 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47151 * 239.99755 * 2 1 3 34 34 H 1.09004 * 109.46803 * 119.99416 * 2 1 3 35 35 H 1.08991 * 109.46853 * 269.97832 * 7 6 5 36 36 H 1.09002 * 109.46782 * 29.97415 * 7 6 5 37 37 H 1.09000 * 109.46672 * 149.97701 * 7 6 5 38 38 H 1.07991 * 121.09158 * 179.97438 * 8 6 5 39 39 H 0.97002 * 120.00110 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.49409 * 58.66641 * 15 13 12 41 41 H 1.08996 * 109.52748 * 298.58186 * 15 13 12 42 42 H 1.09003 * 109.58493 * 294.84848 * 16 15 13 43 43 H 1.08996 * 109.70755 * 174.49586 * 16 15 13 44 44 H 0.96999 * 119.99842 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58982 * 173.14139 * 26 17 16 46 46 H 1.09003 * 109.58724 * 293.57100 * 26 17 16 47 47 H 1.09000 * 109.47585 * 179.97438 * 29 27 26 48 48 H 1.09006 * 109.46509 * 299.97071 * 29 27 26 49 49 H 1.08999 * 109.46877 * 59.96356 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3705 2.0046 1.1337 5 7 2.7978 3.2131 1.1822 6 6 2.9360 3.9602 0.1037 7 6 3.4438 5.3738 0.2258 8 6 2.6152 3.4444 -1.1410 9 6 2.1473 2.1250 -1.2013 10 6 1.7817 1.5001 -2.4937 11 8 1.2952 0.3868 -2.5142 12 7 1.9888 2.1663 -3.6469 13 6 1.6278 1.5481 -4.9250 14 1 0.7301 0.9436 -4.7953 15 6 2.7771 0.6580 -5.4035 16 6 2.3824 -0.0137 -6.7226 17 7 1.9843 1.0256 -7.6818 18 6 2.5667 1.0926 -8.9194 19 1 3.5743 0.7313 -9.0624 20 6 1.8618 1.6251 -9.9902 21 7 0.5530 1.7461 -9.9216 22 14 2.7701 2.1626 -11.5314 23 1 2.8580 1.0215 -12.4776 24 1 2.0358 3.2824 -12.1735 25 1 4.1383 2.6114 -11.1687 26 6 0.9539 1.9952 -7.2859 27 6 1.3607 2.6409 -5.9626 28 1 2.2653 3.2307 -6.1108 29 6 0.2337 3.5500 -5.4681 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.6017 6.0516 0.3647 36 1 4.1138 5.4464 1.0826 37 1 3.9833 5.6457 -0.6814 38 1 2.7210 4.0399 -2.0356 39 1 2.3776 3.0549 -3.6306 40 1 2.9822 -0.1059 -4.6534 41 1 3.6688 1.2656 -5.5573 42 1 1.5467 -0.6923 -6.5513 43 1 3.2306 -0.5715 -7.1192 44 1 0.0605 2.1178 -10.6700 45 1 0.8617 2.7642 -8.0529 46 1 -0.0006 1.4838 -7.1615 47 1 0.5253 4.0095 -4.5237 48 1 0.0438 4.3281 -6.2075 49 1 -0.6710 2.9599 -5.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942195288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:08 Heat of formation + Delta-G solvation = 29.770798 kcal Electronic energy + Delta-G solvation = -29347.608898 eV Core-core repulsion = 25503.309358 eV Total energy + Delta-G solvation = -3844.299540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 34.17 seconds Orbital eigenvalues (eV) -41.66338 -39.82123 -37.84711 -35.48543 -34.55441 -33.97609 -32.64292 -31.95409 -31.52526 -29.45342 -28.27427 -26.11680 -25.80246 -25.16019 -24.20641 -22.48118 -21.94587 -20.99052 -20.59688 -19.47920 -17.99871 -17.72462 -16.72018 -16.21918 -15.86966 -15.72148 -15.00537 -14.89401 -14.64438 -14.26820 -14.06368 -13.92422 -13.75920 -13.46641 -13.44312 -13.22603 -12.98041 -12.74083 -12.65152 -12.49110 -12.18745 -11.93158 -11.59513 -11.42723 -11.22105 -11.10471 -11.02083 -10.81340 -10.73896 -10.54288 -10.49026 -10.40318 -10.26182 -10.09379 -9.87472 -9.78031 -9.70690 -9.45322 -8.88583 -8.53043 -6.75777 -5.86573 -3.28706 0.05566 0.53948 2.61234 2.94005 3.32539 3.32682 3.40072 3.41803 3.60726 3.95314 4.06204 4.29690 4.43405 4.47616 4.73040 4.91465 5.08096 5.09814 5.13717 5.22167 5.28199 5.30573 5.34826 5.37327 5.45207 5.56006 5.62762 5.63867 5.75065 5.86236 5.90534 5.95811 5.98777 6.08293 6.18501 6.19565 6.24923 6.34866 6.38706 6.47385 6.56928 6.69823 6.78469 6.89909 7.23211 7.38435 7.55438 7.73530 8.05538 8.37371 8.39287 9.13566 9.76640 10.33265 11.22398 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002825 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.147486 B = 9910.510821 C =10604.125284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C 0.120 3.880 4 N -0.241 5.241 5 N -0.228 5.228 6 C 0.057 3.943 7 C -0.100 4.100 8 C -0.085 4.085 9 C -0.123 4.123 10 C 0.556 3.444 11 O -0.513 6.513 12 N -0.709 5.709 13 C 0.157 3.843 14 H 0.087 0.913 15 C -0.140 4.140 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.182 3.818 27 C -0.122 4.122 28 H 0.068 0.932 29 C -0.140 4.140 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.394 0.606 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 5.795 18.216 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.025 4.025 4 N -0.082 5.082 5 N -0.071 5.071 6 C -0.088 4.088 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.341 3.659 11 O -0.390 6.390 12 N -0.359 5.359 13 C 0.054 3.946 14 H 0.105 0.895 15 C -0.181 4.181 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.055 3.945 27 C -0.143 4.143 28 H 0.086 0.914 29 C -0.198 4.198 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.171 0.829 39 H 0.229 0.771 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.486 4.909 19.666 20.422 hybrid contribution 0.515 1.020 -2.373 2.634 sum 3.002 5.930 17.294 18.527 Atomic orbital electron populations 1.21583 0.93354 1.02547 1.01655 1.20729 0.97319 0.88602 1.04884 1.23168 0.92076 0.98717 0.88507 1.73060 1.08082 1.03103 1.23937 1.72826 1.07709 0.99546 1.26998 1.22856 0.96892 0.98961 0.90051 1.20700 1.02020 0.88884 1.04250 1.22551 0.94638 0.94519 0.99729 1.21258 1.01144 0.95134 0.96201 1.17855 0.79368 0.85690 0.83023 1.90753 1.43214 1.18358 1.86656 1.46268 1.63241 1.20064 1.06371 1.21182 0.98489 0.94806 0.80107 0.89528 1.22406 0.97744 0.98857 0.99063 1.20870 0.97798 0.90926 0.88340 1.44080 1.45558 1.29294 1.12544 1.19163 0.95747 1.38531 0.84999 0.91663 1.25045 0.95001 1.02087 0.97358 1.70029 1.04921 1.47986 1.31591 0.86323 0.79138 0.78251 0.83208 1.21340 1.21541 1.20491 1.20696 0.90005 0.92931 0.90853 1.22116 0.98683 0.95782 0.97761 0.91369 1.21739 0.98768 0.99526 0.99726 0.93342 0.91944 0.91583 0.86999 0.90301 0.89669 0.89735 0.90009 0.82909 0.77110 0.92541 0.92257 0.96093 0.92460 0.93565 0.89055 0.96065 0.94060 0.92427 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.51 37.16 0.35 -1.14 16 2 C -0.08 -0.90 5.48 -27.89 -0.15 -1.05 16 3 C 0.12 1.51 6.16 -82.00 -0.51 1.01 16 4 N -0.24 -3.24 11.42 33.81 0.39 -2.86 16 5 N -0.23 -2.85 11.41 33.57 0.38 -2.46 16 6 C 0.06 0.54 6.86 -82.45 -0.57 -0.02 16 7 C -0.10 -0.58 10.19 36.01 0.37 -0.21 16 8 C -0.08 -0.78 9.35 -38.78 -0.36 -1.14 16 9 C -0.12 -1.44 5.92 -104.57 -0.62 -2.06 16 10 C 0.56 7.32 7.71 -12.19 -0.09 7.22 16 11 O -0.51 -8.00 11.71 5.36 0.06 -7.94 16 12 N -0.71 -8.74 4.32 -54.61 -0.24 -8.98 16 13 C 0.16 2.45 1.88 -67.89 -0.13 2.32 16 14 H 0.09 1.53 7.57 -51.93 -0.39 1.14 16 15 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 16 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 17 N -0.59 -14.10 3.00 -172.59 -0.52 -14.62 16 18 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 19 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 20 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 21 N -0.90 -25.20 11.24 55.49 0.62 -24.57 16 22 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.18 4.00 4.56 -3.93 -0.02 3.98 16 27 C -0.12 -2.03 2.44 -90.72 -0.22 -2.25 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 C -0.14 -1.95 9.03 37.16 0.34 -1.62 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.79 6.95 -51.93 -0.36 0.43 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 1.43 5.87 -51.93 -0.30 1.13 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.15 0.91 6.64 -52.49 -0.35 0.56 16 39 H 0.39 3.83 6.53 -40.82 -0.27 3.56 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.09 2.27 6.09 -51.93 -0.32 1.95 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.47 7.36 -51.93 -0.38 0.09 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -30.59 386.68 -8.34 -38.93 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.83 Total: 2.10 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.01 Total: -1.34 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.64 Total: -53.49 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.06 Total: -7.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.59 -8.34 -38.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942195288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.702 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 34.18 seconds