Wall clock time and date at job start Tue Mar 31 2020 21:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46961 * 2 1 4 4 N 1.31928 * 120.17523 * 96.25900 * 3 2 1 5 5 N 1.28274 * 122.32672 * 180.27761 * 4 3 2 6 6 C 1.31919 * 122.51688 * 359.72241 * 5 4 3 7 7 C 1.50707 * 120.01586 * 180.02562 * 6 5 4 8 8 C 1.38505 * 119.96936 * 359.97438 * 6 5 4 9 9 C 1.39722 * 120.17268 * 275.99911 * 3 2 1 10 10 C 1.48138 * 121.14350 * 0.02562 * 9 3 2 11 11 O 1.21511 * 120.00021 * 4.61048 * 10 9 3 12 12 N 1.34780 * 120.00000 * 184.61312 * 10 9 3 13 13 C 1.46503 * 119.99810 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.45895 * 34.97679 * 13 12 10 15 15 C 1.53040 * 109.46070 * 274.99880 * 13 12 10 16 16 C 1.53192 * 109.31098 * 178.61669 * 15 13 12 17 17 N 1.46923 * 108.77461 * 54.63335 * 16 15 13 18 18 C 1.36944 * 120.62464 * 126.37285 * 17 16 15 19 19 H 1.07993 * 120.00405 * 331.96306 * 18 17 16 20 20 C 1.38812 * 119.99646 * 151.97297 * 18 17 16 21 21 N 1.31620 * 120.00028 * 342.53295 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 162.81936 * 20 18 17 23 23 H 1.48498 * 109.47430 * 89.99640 * 22 20 18 24 24 H 1.48505 * 109.47127 * 209.99239 * 22 20 18 25 25 H 1.48496 * 109.47382 * 329.99236 * 22 20 18 26 26 C 1.46924 * 118.74496 * 306.64362 * 17 16 15 27 27 C 1.52760 * 109.00474 * 53.30694 * 26 17 16 28 28 H 1.09004 * 109.38536 * 65.51587 * 27 26 17 29 29 C 1.53001 * 109.56710 * 185.55498 * 27 26 17 30 30 H 1.09004 * 109.47483 * 300.00067 * 1 2 3 31 31 H 1.09000 * 109.47431 * 60.00217 * 1 2 3 32 32 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47151 * 239.99755 * 2 1 3 34 34 H 1.09004 * 109.46803 * 119.99416 * 2 1 3 35 35 H 1.08991 * 109.46853 * 269.97832 * 7 6 5 36 36 H 1.09002 * 109.46782 * 29.97415 * 7 6 5 37 37 H 1.09000 * 109.46672 * 149.97701 * 7 6 5 38 38 H 1.07991 * 121.09158 * 179.97438 * 8 6 5 39 39 H 0.97002 * 120.00110 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.49409 * 58.66641 * 15 13 12 41 41 H 1.08996 * 109.52748 * 298.58186 * 15 13 12 42 42 H 1.09003 * 109.58493 * 294.84848 * 16 15 13 43 43 H 1.08996 * 109.70755 * 174.49586 * 16 15 13 44 44 H 0.96999 * 119.99842 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58982 * 173.14139 * 26 17 16 46 46 H 1.09003 * 109.58724 * 293.57100 * 26 17 16 47 47 H 1.09000 * 109.47585 * 179.97438 * 29 27 26 48 48 H 1.09006 * 109.46509 * 299.97071 * 29 27 26 49 49 H 1.08999 * 109.46877 * 59.96356 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3705 2.0046 1.1337 5 7 2.7978 3.2131 1.1822 6 6 2.9360 3.9602 0.1037 7 6 3.4438 5.3738 0.2258 8 6 2.6152 3.4444 -1.1410 9 6 2.1473 2.1250 -1.2013 10 6 1.7817 1.5001 -2.4937 11 8 1.2952 0.3868 -2.5142 12 7 1.9888 2.1663 -3.6469 13 6 1.6278 1.5481 -4.9250 14 1 0.7301 0.9436 -4.7953 15 6 2.7771 0.6580 -5.4035 16 6 2.3824 -0.0137 -6.7226 17 7 1.9843 1.0256 -7.6818 18 6 2.5667 1.0926 -8.9194 19 1 3.5743 0.7313 -9.0624 20 6 1.8618 1.6251 -9.9902 21 7 0.5530 1.7461 -9.9216 22 14 2.7701 2.1626 -11.5314 23 1 2.8580 1.0215 -12.4776 24 1 2.0358 3.2824 -12.1735 25 1 4.1383 2.6114 -11.1687 26 6 0.9539 1.9952 -7.2859 27 6 1.3607 2.6409 -5.9626 28 1 2.2653 3.2307 -6.1108 29 6 0.2337 3.5500 -5.4681 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 2.6017 6.0516 0.3647 36 1 4.1138 5.4464 1.0826 37 1 3.9833 5.6457 -0.6814 38 1 2.7210 4.0399 -2.0356 39 1 2.3776 3.0549 -3.6306 40 1 2.9822 -0.1059 -4.6534 41 1 3.6688 1.2656 -5.5573 42 1 1.5467 -0.6923 -6.5513 43 1 3.2306 -0.5715 -7.1192 44 1 0.0605 2.1178 -10.6700 45 1 0.8617 2.7642 -8.0529 46 1 -0.0006 1.4838 -7.1615 47 1 0.5253 4.0095 -4.5237 48 1 0.0438 4.3281 -6.2075 49 1 -0.6710 2.9599 -5.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942195288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:59 Heat of formation + Delta-G solvation = 11.233118 kcal Electronic energy + Delta-G solvation = -29348.412752 eV Core-core repulsion = 25503.309358 eV Total energy + Delta-G solvation = -3845.103394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.59 seconds Orbital eigenvalues (eV) -42.53946 -40.95256 -39.24916 -36.57982 -35.78781 -34.93307 -33.96380 -33.52467 -32.54209 -31.04549 -28.98463 -27.55497 -27.16387 -26.28002 -25.28323 -23.87370 -22.90776 -22.50255 -21.71577 -20.92763 -19.05389 -18.84495 -18.34992 -17.12595 -17.07695 -16.68336 -16.56223 -15.98005 -15.83373 -15.54645 -15.33050 -15.13526 -14.87113 -14.71119 -14.60039 -14.27561 -14.18166 -14.03145 -13.52540 -13.28004 -13.20414 -13.17820 -12.93167 -12.86820 -12.78389 -12.53093 -12.47883 -12.12440 -12.04501 -11.90326 -11.81843 -11.73546 -11.52784 -11.38119 -11.35103 -11.22255 -10.60600 -10.55752 -10.49122 -10.05341 -8.69807 -7.87910 -5.33026 -0.79697 -0.24791 1.48113 1.50012 1.59336 1.64030 1.87018 2.44964 2.52058 2.83143 3.15752 3.25711 3.28189 3.52326 3.63182 3.67190 3.79786 3.98790 4.02295 4.19781 4.23248 4.25693 4.34878 4.40192 4.53610 4.57967 4.64530 4.70026 4.73778 4.78439 4.84840 4.90821 4.93385 4.97996 4.99704 5.04053 5.08002 5.12292 5.26625 5.28376 5.30971 5.33669 5.35887 5.49865 5.51126 5.66563 5.74346 6.38456 6.41521 7.05565 7.15126 7.55438 7.84766 8.36937 9.18937 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002825 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.147486 B = 9910.510821 C =10604.125284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C 0.108 3.892 4 N -0.266 5.266 5 N -0.255 5.255 6 C 0.060 3.940 7 C -0.100 4.100 8 C -0.067 4.067 9 C -0.135 4.135 10 C 0.560 3.440 11 O -0.540 6.540 12 N -0.695 5.695 13 C 0.172 3.828 14 H 0.065 0.935 15 C -0.126 4.126 16 C 0.144 3.856 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.268 1.268 26 C 0.189 3.811 27 C -0.107 4.107 28 H 0.077 0.923 29 C -0.134 4.134 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.193 0.807 39 H 0.412 0.588 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.008 0.992 43 H 0.056 0.944 44 H 0.250 0.750 45 H 0.061 0.939 46 H -0.009 1.009 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 8.059 19.172 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 C -0.037 4.037 4 N -0.107 5.107 5 N -0.097 5.097 6 C -0.085 4.085 7 C -0.158 4.158 8 C -0.096 4.096 9 C -0.149 4.149 10 C 0.346 3.654 11 O -0.419 6.419 12 N -0.347 5.347 13 C 0.067 3.933 14 H 0.083 0.917 15 C -0.166 4.166 16 C 0.018 3.982 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.063 3.937 27 C -0.128 4.128 28 H 0.096 0.904 29 C -0.192 4.192 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.210 0.790 39 H 0.250 0.750 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.009 0.991 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.079 7.190 20.674 22.265 hybrid contribution 0.033 0.292 -2.641 2.657 sum 4.112 7.481 18.033 19.952 Atomic orbital electron populations 1.21519 0.93185 1.02915 1.00883 1.20672 0.97436 0.88658 1.04544 1.23237 0.92539 0.99019 0.88923 1.73013 1.09221 1.03968 1.24461 1.72752 1.08629 0.99594 1.28736 1.23479 0.95490 1.00153 0.89417 1.20881 1.02712 0.86458 1.05713 1.22978 0.92168 0.93405 1.01067 1.21094 1.02659 0.96375 0.94804 1.18017 0.78610 0.85272 0.83482 1.90756 1.44296 1.19743 1.87060 1.45883 1.63276 1.20697 1.04834 1.20730 0.97160 0.94113 0.81278 0.91728 1.22202 0.98311 0.99122 0.96983 1.20961 0.97183 0.90506 0.89548 1.44351 1.45673 1.30688 1.12577 1.19483 0.95888 1.37887 0.86184 0.91596 1.25768 0.95627 1.02668 1.00171 1.70185 1.06269 1.49177 1.32242 0.85320 0.78339 0.77397 0.79626 1.21553 1.21789 1.19322 1.20499 0.88670 0.91696 0.92881 1.21831 0.99935 0.96008 0.95034 0.90437 1.21698 0.97271 0.98831 1.01363 0.93000 0.93614 0.90701 0.88255 0.89590 0.88190 0.89769 0.87260 0.79030 0.75025 0.91767 0.91393 0.97450 0.92542 0.94052 0.92107 0.99055 0.90407 0.92480 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.51 71.98 0.68 -2.16 16 2 C -0.07 -1.73 5.48 29.85 0.16 -1.57 16 3 C 0.11 2.64 6.16 42.90 0.26 2.90 16 4 N -0.27 -6.97 11.42 -46.95 -0.54 -7.50 16 5 N -0.25 -5.97 11.41 -47.69 -0.54 -6.51 16 6 C 0.06 0.96 6.86 42.61 0.29 1.25 16 7 C -0.10 -0.74 10.19 71.24 0.73 -0.02 16 8 C -0.07 -0.96 9.35 22.79 0.21 -0.75 16 9 C -0.14 -2.87 5.92 -19.83 -0.12 -2.99 16 10 C 0.56 13.68 7.71 86.87 0.67 14.35 16 11 O -0.54 -16.55 11.71 -3.75 -0.04 -16.59 16 12 N -0.70 -15.09 4.32 -444.99 -1.92 -17.01 16 13 C 0.17 5.11 1.88 45.02 0.08 5.19 16 14 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 15 C -0.13 -4.08 5.65 30.67 0.17 -3.91 16 16 C 0.14 5.91 6.52 86.36 0.56 6.47 16 17 N -0.61 -29.43 3.00 -699.94 -2.10 -31.52 16 18 C -0.26 -14.05 9.58 84.03 0.80 -13.25 16 19 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 20 C -0.05 -2.52 4.90 84.86 0.42 -2.11 16 21 N -0.93 -53.56 11.24 21.65 0.24 -53.31 16 22 Si 0.97 43.30 29.59 68.60 2.03 45.33 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 C 0.19 8.48 4.56 86.22 0.39 8.87 16 27 C -0.11 -3.41 2.44 -10.86 -0.03 -3.44 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 C -0.13 -3.46 9.03 71.98 0.65 -2.81 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.16 6.95 -2.39 -0.02 1.15 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 2.57 5.87 -2.39 -0.01 2.55 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 0.25 8.09 -2.39 -0.02 0.23 16 38 H 0.19 1.14 6.64 -2.92 -0.02 1.12 16 39 H 0.41 6.07 6.53 -92.71 -0.60 5.46 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 44 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 45 H 0.06 3.10 6.09 -2.39 -0.01 3.09 16 46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H 0.08 1.45 7.36 -2.39 -0.02 1.43 16 48 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -69.32 386.68 3.43 -65.89 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.35 Total: 15.19 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.95 Total: 6.05 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.86 Total: -115.87 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.04 Total: -16.59 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -69.32 3.43 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942195288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.119 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.59 seconds