Wall clock time and date at job start Tue Mar 31 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47042 * 2 1 4 4 C 1.38546 * 120.01139 * 125.00447 * 3 2 1 5 5 C 1.40075 * 117.81528 * 179.97438 * 4 3 2 6 6 C 1.48135 * 121.14582 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99833 * 174.18995 * 6 5 4 8 8 N 1.34777 * 119.99932 * 354.19181 * 6 5 4 9 9 C 1.46505 * 120.00001 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46077 * 35.02323 * 9 8 6 11 11 C 1.53039 * 109.45971 * 275.06858 * 9 8 6 12 12 C 1.53620 * 109.24509 * 178.48762 * 11 9 8 13 13 N 1.46930 * 108.54163 * 54.85656 * 12 11 9 14 14 C 1.36931 * 120.63483 * 126.37179 * 13 12 11 15 15 H 1.08009 * 119.99545 * 332.21896 * 14 13 12 16 16 C 1.38814 * 120.00561 * 152.22061 * 14 13 12 17 17 N 1.31617 * 119.99694 * 344.91793 * 16 14 13 18 18 Si 1.86800 * 119.99928 * 165.18963 * 16 14 13 19 19 H 1.48501 * 109.46765 * 90.00214 * 18 16 14 20 20 H 1.48503 * 109.46709 * 209.99877 * 18 16 14 21 21 H 1.48495 * 109.47352 * 330.00419 * 18 16 14 22 22 C 1.46926 * 118.73460 * 306.09591 * 13 12 11 23 23 C 1.53031 * 109.46185 * 154.99935 * 9 8 6 24 24 H 1.09000 * 109.52425 * 61.41525 * 23 9 8 25 25 C 1.53001 * 109.49854 * 301.33569 * 23 9 8 26 26 C 1.39768 * 117.70800 * 0.27309 * 5 4 3 27 27 C 1.50697 * 120.17125 * 179.71120 * 26 5 4 28 28 N 1.31900 * 119.65327 * 359.43616 * 26 5 4 29 29 N 1.28279 * 122.32854 * 0.59083 * 28 26 5 30 30 H 1.08999 * 109.47469 * 59.99602 * 1 2 3 31 31 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47114 * 299.99923 * 1 2 3 33 33 H 1.09002 * 109.46700 * 239.99937 * 2 1 3 34 34 H 1.08999 * 109.46946 * 120.00338 * 2 1 3 35 35 H 1.08003 * 121.09616 * 359.95080 * 4 3 2 36 36 H 0.96996 * 120.00050 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.49998 * 298.56561 * 11 9 8 38 38 H 1.09003 * 109.50049 * 58.63109 * 11 9 8 39 39 H 1.09005 * 109.74111 * 295.12464 * 12 11 9 40 40 H 1.08999 * 109.67259 * 174.54893 * 12 11 9 41 41 H 0.96996 * 120.00078 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.58520 * 173.64717 * 22 13 12 43 43 H 1.09001 * 109.59128 * 293.92327 * 22 13 12 44 44 H 1.09000 * 109.47428 * 300.16381 * 25 23 9 45 45 H 1.09003 * 109.46734 * 60.16705 * 25 23 9 46 46 H 1.08997 * 109.47143 * 180.16172 * 25 23 9 47 47 H 1.08997 * 109.47350 * 83.64042 * 27 26 5 48 48 H 1.09008 * 109.46796 * 203.63556 * 27 26 5 49 49 H 1.09002 * 109.46997 * 323.63333 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9121 1.8448 0.9827 5 6 3.3501 3.1746 0.9384 6 6 4.2904 3.7057 1.9524 7 8 4.7392 4.8289 1.8354 8 7 4.6481 2.9432 3.0046 9 6 5.5785 3.4683 4.0071 10 1 5.4055 4.5364 4.1389 11 6 7.0168 3.2393 3.5373 12 6 7.9875 3.8254 4.5738 13 7 7.6808 3.2383 5.8853 14 6 8.6602 2.6291 6.6233 15 1 9.5055 2.1745 6.1280 16 6 8.5666 2.5956 8.0079 17 7 7.7179 3.3866 8.6294 18 14 9.6506 1.4332 8.9894 19 1 10.9206 2.1183 9.3399 20 1 8.9457 1.0306 10.2329 21 1 9.9471 0.2270 8.1756 22 6 6.3045 3.3229 6.3927 23 6 5.3540 2.7474 5.3382 24 1 5.5507 1.6826 5.2134 25 6 3.9065 2.9497 5.7907 26 6 2.8644 3.9848 -0.0917 27 6 3.2940 5.4260 -0.1884 28 7 2.0323 3.4799 -0.9819 29 7 1.6351 2.2610 -0.9357 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.2490 1.1722 1.7577 36 1 4.2896 2.0468 3.0981 37 1 7.1984 2.1700 3.4290 38 1 7.1691 3.7331 2.5775 39 1 7.8666 4.9077 4.6207 40 1 9.0127 3.5818 4.2952 41 1 7.6527 3.3635 9.5969 42 1 6.2189 2.7476 7.3146 43 1 6.0501 4.3648 6.5873 44 1 3.7098 4.0147 5.9142 45 1 3.2306 2.5399 5.0401 46 1 3.7478 2.4384 6.7402 47 1 4.2510 5.4859 -0.7067 48 1 2.5448 5.9920 -0.7421 49 1 3.3967 5.8425 0.8137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942530704.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:06 Heat of formation + Delta-G solvation = 28.458519 kcal Electronic energy + Delta-G solvation = -29060.173513 eV Core-core repulsion = 25215.817068 eV Total energy + Delta-G solvation = -3844.356445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 7.87 seconds Orbital eigenvalues (eV) -41.64718 -39.82416 -37.79638 -35.60765 -34.70770 -33.86019 -32.59056 -31.92224 -31.61011 -29.50428 -28.05184 -26.35915 -25.97926 -24.97704 -23.76205 -22.99594 -22.00760 -20.98733 -20.52034 -19.47361 -17.92444 -17.69091 -16.72796 -16.05529 -15.97286 -15.69577 -15.29827 -14.93091 -14.76741 -14.31470 -14.19363 -13.89477 -13.70698 -13.57993 -13.20441 -13.13473 -12.97685 -12.66262 -12.60614 -12.36349 -12.17506 -12.13781 -11.60287 -11.56194 -11.39630 -11.13427 -11.09357 -10.81556 -10.73747 -10.54196 -10.48979 -10.42912 -10.25187 -10.08161 -9.87892 -9.78842 -9.68407 -9.48242 -8.88211 -8.53218 -6.75945 -5.85441 -3.28867 0.05804 0.54156 2.61157 2.94171 3.32532 3.32711 3.39941 3.41472 3.59288 3.91971 4.07659 4.28921 4.43262 4.45870 4.68444 4.75994 4.86392 5.10760 5.15563 5.17823 5.24309 5.34801 5.36927 5.46417 5.48589 5.55374 5.57551 5.63307 5.68340 5.76153 5.82523 5.93354 5.97125 5.99464 6.08727 6.17307 6.24106 6.34887 6.38934 6.48151 6.58292 6.69858 6.78853 6.89851 7.26040 7.39205 7.60084 7.72739 8.04936 8.38021 8.39214 9.14257 9.76837 10.32952 11.22899 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002706 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.659315 B =10344.812906 C =11125.673267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.058 3.942 4 C -0.082 4.082 5 C -0.126 4.126 6 C 0.557 3.443 7 O -0.518 6.518 8 N -0.709 5.709 9 C 0.156 3.844 10 H 0.086 0.914 11 C -0.140 4.140 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.180 3.820 23 C -0.122 4.122 24 H 0.068 0.932 25 C -0.140 4.140 26 C 0.117 3.883 27 C -0.105 4.105 28 N -0.243 5.243 29 N -0.222 5.222 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.395 0.605 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.021 0.979 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.977 -5.121 -14.531 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.111 4.111 5 C -0.140 4.140 6 C 0.342 3.658 7 O -0.395 6.395 8 N -0.359 5.359 9 C 0.054 3.946 10 H 0.104 0.896 11 C -0.181 4.181 12 C 0.020 3.980 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.549 5.549 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.053 3.947 23 C -0.143 4.143 24 H 0.086 0.914 25 C -0.198 4.198 26 C -0.027 4.027 27 C -0.163 4.163 28 N -0.085 5.085 29 N -0.065 5.065 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.229 0.771 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.547 -4.024 -15.755 21.164 hybrid contribution 1.243 -1.379 1.891 2.650 sum -12.304 -5.403 -13.864 19.307 Atomic orbital electron populations 1.21715 0.93589 1.02266 1.02902 1.20468 0.97423 0.88869 1.03932 1.22841 0.94747 0.98741 0.92297 1.22571 0.94761 0.95248 0.98555 1.21255 0.99761 0.94864 0.98144 1.17859 0.81029 0.85559 0.81380 1.90760 1.54565 1.18401 1.75733 1.46267 1.47218 1.18048 1.24371 1.21193 0.87848 0.99211 0.86389 0.89580 1.22480 0.94938 1.01327 0.99330 1.20966 0.96042 0.95027 0.85949 1.44121 1.05244 1.65338 1.16855 1.19192 1.02705 1.28225 0.88030 0.91609 1.25055 0.99051 0.98699 0.96858 1.69987 1.39147 1.37767 1.07991 0.86284 0.80000 0.80841 0.79571 1.21354 1.21548 1.20507 1.20857 0.81295 0.98159 0.94391 1.22192 0.96392 1.00371 0.95382 0.91369 1.21737 0.95798 1.01661 1.00567 1.23163 0.91388 0.98841 0.89311 1.20976 1.01826 0.87785 1.05709 1.73081 1.09239 1.05374 1.20814 1.72743 1.17058 0.97569 1.19128 0.91382 0.91777 0.92714 0.89282 0.89714 0.82929 0.77085 0.92233 0.92597 0.96033 0.92445 0.93544 0.88492 0.96103 0.92898 0.94097 0.92413 0.89376 0.90699 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.78 37.16 0.36 -0.58 16 2 C -0.07 -0.44 6.35 -27.88 -0.18 -0.62 16 3 C 0.06 0.56 6.25 -82.46 -0.52 0.05 16 4 C -0.08 -0.76 9.29 -38.78 -0.36 -1.12 16 5 C -0.13 -1.48 5.92 -104.57 -0.62 -2.10 16 6 C 0.56 7.46 7.70 -12.20 -0.09 7.37 16 7 O -0.52 -8.32 13.20 5.35 0.07 -8.25 16 8 N -0.71 -8.88 4.33 -54.62 -0.24 -9.12 16 9 C 0.16 2.47 1.88 -67.89 -0.13 2.34 16 10 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 11 C -0.14 -2.38 5.67 -26.39 -0.15 -2.53 16 12 C 0.15 3.00 6.54 -3.49 -0.02 2.98 16 13 N -0.59 -14.15 2.99 -172.05 -0.51 -14.67 16 14 C -0.25 -6.64 9.60 -15.06 -0.14 -6.79 16 15 H 0.07 1.71 7.87 -52.48 -0.41 1.30 16 16 C 0.00 0.04 4.97 -17.43 -0.09 -0.04 16 17 N -0.90 -25.25 11.03 55.49 0.61 -24.64 16 18 Si 0.90 20.97 29.58 -169.99 -5.03 15.95 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.18 3.98 4.58 -3.71 -0.02 3.96 16 23 C -0.12 -2.05 2.46 -90.50 -0.22 -2.27 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 C -0.14 -1.99 9.02 37.16 0.34 -1.65 16 26 C 0.12 1.47 6.91 -81.99 -0.57 0.90 16 27 C -0.11 -1.18 8.97 36.00 0.32 -0.86 16 28 N -0.24 -3.24 11.42 33.81 0.39 -2.85 16 29 N -0.22 -2.74 11.04 33.58 0.37 -2.37 16 30 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 35 H 0.15 0.94 6.59 -52.48 -0.35 0.60 16 36 H 0.39 3.89 6.53 -40.82 -0.27 3.62 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.10 2.42 5.94 -51.92 -0.31 2.12 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 49 H 0.11 1.31 5.94 -51.93 -0.31 1.00 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -30.55 388.44 -8.43 -38.98 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.86 Total: 2.07 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.08 Total: -0.96 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.62 Total: -53.64 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.55 -8.43 -38.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942530704.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.442 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.87 seconds