Wall clock time and date at job start Tue Mar 31 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47100 * 2 1 4 4 C 1.38546 * 120.01562 * 125.02261 * 3 2 1 5 5 C 1.40073 * 117.81773 * 179.97438 * 4 3 2 6 6 C 1.48141 * 121.14429 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99981 * 174.17809 * 6 5 4 8 8 N 1.34781 * 119.99903 * 354.17465 * 6 5 4 9 9 C 1.46496 * 119.99532 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46385 * 35.00540 * 9 8 6 11 11 C 1.53042 * 109.46102 * 275.02681 * 9 8 6 12 12 C 1.53163 * 109.33018 * 301.36140 * 11 9 8 13 13 N 1.46928 * 108.76769 * 305.35695 * 12 11 9 14 14 C 1.36933 * 120.62831 * 233.62744 * 13 12 11 15 15 H 1.08001 * 119.99904 * 151.09301 * 14 13 12 16 16 C 1.38809 * 120.00392 * 331.09993 * 14 13 12 17 17 N 1.31618 * 119.99659 * 343.12828 * 16 14 13 18 18 Si 1.86800 * 120.00201 * 163.13146 * 16 14 13 19 19 H 1.48500 * 109.47078 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46896 * 120.00003 * 18 16 14 21 21 H 1.48502 * 109.47055 * 239.99666 * 18 16 14 22 22 C 1.46929 * 118.74044 * 53.60559 * 13 12 11 23 23 C 1.53038 * 109.45838 * 154.97470 * 9 8 6 24 24 H 1.08999 * 109.50208 * 178.60782 * 23 9 8 25 25 C 1.53001 * 109.49886 * 298.66993 * 23 9 8 26 26 C 1.39768 * 117.71041 * 0.02562 * 5 4 3 27 27 C 1.50697 * 120.17206 * 179.97438 * 26 5 4 28 28 N 1.31893 * 119.65083 * 359.97438 * 26 5 4 29 29 N 1.28281 * 122.33131 * 0.02562 * 28 26 5 30 30 H 1.08999 * 109.47349 * 299.99713 * 1 2 3 31 31 H 1.09001 * 109.47254 * 60.00113 * 1 2 3 32 32 H 1.08996 * 109.47454 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47349 * 240.00287 * 2 1 3 34 34 H 1.08999 * 109.47698 * 120.00158 * 2 1 3 35 35 H 1.08001 * 121.08919 * 359.96095 * 4 3 2 36 36 H 0.96990 * 119.99936 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.49431 * 61.29921 * 11 9 8 38 38 H 1.09005 * 109.49630 * 181.39456 * 11 9 8 39 39 H 1.08989 * 109.59130 * 185.56727 * 12 11 9 40 40 H 1.09001 * 109.58820 * 65.13916 * 12 11 9 41 41 H 0.96998 * 120.00403 * 180.02562 * 17 16 14 42 42 H 1.08992 * 109.58550 * 186.60502 * 22 13 12 43 43 H 1.08996 * 109.70198 * 66.24773 * 22 13 12 44 44 H 1.09003 * 109.47224 * 60.00057 * 25 23 9 45 45 H 1.08999 * 109.47110 * 179.97438 * 25 23 9 46 46 H 1.08999 * 109.47491 * 300.00158 * 25 23 9 47 47 H 1.08998 * 109.47220 * 83.40826 * 27 26 5 48 48 H 1.09008 * 109.46914 * 203.40625 * 27 26 5 49 49 H 1.09004 * 109.47101 * 323.40071 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9124 1.8448 0.9824 5 6 3.3503 3.1745 0.9381 6 6 4.2918 3.7053 1.9513 7 8 4.7407 4.8284 1.8341 8 7 4.6505 2.9425 3.0030 9 6 5.5811 3.4676 4.0051 10 1 5.4079 4.5356 4.1372 11 6 7.0193 3.2386 3.5349 12 6 7.2490 1.7400 3.3171 13 7 6.8963 1.0236 4.5505 14 6 7.7890 0.1691 5.1404 15 1 7.7614 0.0125 6.2086 16 6 8.7293 -0.4959 4.3655 17 7 8.5687 -0.5773 3.0617 18 14 10.2225 -1.2753 5.1732 19 1 10.1695 -1.0441 6.6391 20 1 10.2266 -2.7352 4.9016 21 1 11.4588 -0.6656 4.6207 22 6 5.5679 1.2419 5.1391 23 6 5.3572 2.7465 5.3362 24 1 6.0658 3.1192 6.0757 25 6 3.9294 3.0034 5.8224 26 6 2.8684 3.9834 -0.0948 27 6 3.3029 5.4229 -0.1951 28 7 2.0315 3.4802 -0.9814 29 7 1.6343 2.2613 -0.9352 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2496 1.1720 1.7571 36 1 4.2924 2.0459 3.0962 37 1 7.1852 3.7716 2.5986 38 1 7.7124 3.6068 4.2914 39 1 8.2973 1.5619 3.0780 40 1 6.6207 1.3892 2.4984 41 1 9.2256 -1.0422 2.5202 42 1 5.5072 0.7351 6.1021 43 1 4.8011 0.8500 4.4709 44 1 3.2210 2.6294 5.0832 45 1 3.7703 2.4892 6.7702 46 1 3.7795 4.0742 5.9599 47 1 4.2626 5.4779 -0.7089 48 1 2.5582 5.9890 -0.7548 49 1 3.4018 5.8431 0.8058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942530708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:35 Heat of formation + Delta-G solvation = 29.611550 kcal Electronic energy + Delta-G solvation = -29761.782792 eV Core-core repulsion = 25917.476346 eV Total energy + Delta-G solvation = -3844.306446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49132 -39.85718 -37.84913 -35.40457 -34.42374 -33.73010 -32.74342 -31.62880 -31.16889 -30.05306 -27.92713 -26.27123 -25.84215 -25.18271 -23.60323 -22.87917 -22.00685 -21.26346 -20.68162 -18.81961 -17.79280 -17.60568 -16.73890 -15.88222 -15.82066 -15.34380 -15.16112 -14.88263 -14.67986 -14.24584 -14.14502 -14.02279 -13.78169 -13.50675 -13.28620 -13.10313 -12.95205 -12.69604 -12.47503 -12.29428 -12.15922 -12.01039 -11.60599 -11.47584 -11.42298 -11.18157 -10.96072 -10.90309 -10.78892 -10.43479 -10.34680 -10.33736 -10.29526 -10.16568 -9.86265 -9.61091 -9.54913 -9.43857 -8.77921 -8.56466 -6.78118 -5.89533 -3.33756 0.23144 0.71589 2.76005 3.10452 3.30517 3.39335 3.40678 3.48998 3.76362 4.10141 4.25671 4.40095 4.48919 4.63329 4.85331 4.94629 5.03962 5.05652 5.19762 5.25288 5.34199 5.35145 5.38101 5.47613 5.51312 5.65838 5.67056 5.74873 5.78520 5.83177 5.86358 5.95906 5.96410 6.02831 6.09887 6.14322 6.17235 6.29319 6.32590 6.49419 6.54535 6.62640 6.76167 6.81663 7.23805 7.54049 7.55630 7.70740 8.18506 8.34035 8.55293 9.09995 9.72769 10.28722 11.18662 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003585 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.934671 B = 7809.495136 C = 8610.865949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.061 3.939 4 C -0.077 4.077 5 C -0.126 4.126 6 C 0.560 3.440 7 O -0.526 6.526 8 N -0.698 5.698 9 C 0.161 3.839 10 H 0.077 0.923 11 C -0.155 4.155 12 C 0.174 3.826 13 N -0.590 5.590 14 C -0.257 4.257 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.900 5.900 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.152 3.848 23 C -0.120 4.120 24 H 0.085 0.915 25 C -0.142 4.142 26 C 0.116 3.884 27 C -0.103 4.103 28 N -0.245 5.245 29 N -0.223 5.223 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.400 0.600 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 5.501 -1.937 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.345 3.655 7 O -0.404 6.404 8 N -0.350 5.350 9 C 0.057 3.943 10 H 0.095 0.905 11 C -0.195 4.195 12 C 0.049 3.951 13 N -0.313 5.313 14 C -0.386 4.386 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.544 5.544 18 Si 0.731 3.269 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.025 3.975 23 C -0.141 4.141 24 H 0.103 0.897 25 C -0.200 4.200 26 C -0.029 4.029 27 C -0.161 4.161 28 N -0.087 5.087 29 N -0.066 5.066 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.172 0.828 36 H 0.237 0.763 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.011 6.457 -3.458 15.809 hybrid contribution 1.633 -1.287 1.605 2.627 sum -12.378 5.169 -1.853 13.541 Atomic orbital electron populations 1.21703 0.93697 1.02192 1.02724 1.20482 0.97246 0.88899 1.04223 1.22831 0.94695 0.98703 0.92137 1.22625 0.94245 0.95182 0.98649 1.21195 0.99705 0.94898 0.98196 1.17809 0.80952 0.85414 0.81312 1.90721 1.55134 1.18698 1.75817 1.46046 1.46571 1.18276 1.24097 1.20991 0.89114 0.97527 0.86675 0.90465 1.22579 0.94589 1.01623 1.00722 1.20703 1.01606 0.85447 0.87378 1.44058 1.10456 1.48947 1.27803 1.19193 1.09787 1.18537 0.91113 0.91630 1.25053 1.00692 0.97920 0.95613 1.70028 1.35211 1.44913 1.04289 0.86251 0.83084 0.78653 0.78928 1.20193 1.21684 1.21514 1.20904 0.88183 0.91179 0.97235 1.21975 0.96791 0.99646 0.95664 0.89702 1.21774 0.96491 1.00947 1.00813 1.23111 0.91595 0.98770 0.89410 1.20945 1.01726 0.87929 1.05478 1.73049 1.09377 1.05491 1.20812 1.72721 1.17367 0.97524 1.18984 0.92816 0.91469 0.91813 0.89192 0.89526 0.82815 0.76302 0.92572 0.91485 0.89660 0.96516 0.93615 0.92317 0.97198 0.93259 0.92574 0.93153 0.89457 0.90859 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.77 37.15 0.36 -0.84 16 2 C -0.07 -0.63 6.35 -27.89 -0.18 -0.81 16 3 C 0.06 0.74 6.25 -82.46 -0.52 0.22 16 4 C -0.08 -0.94 9.29 -38.78 -0.36 -1.30 16 5 C -0.13 -1.73 5.92 -104.57 -0.62 -2.35 16 6 C 0.56 8.40 7.70 -12.19 -0.09 8.31 16 7 O -0.53 -8.84 13.19 5.35 0.07 -8.76 16 8 N -0.70 -10.12 3.56 -54.62 -0.19 -10.31 16 9 C 0.16 2.51 2.21 -67.89 -0.15 2.36 16 10 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 11 C -0.16 -2.86 5.77 -26.63 -0.15 -3.01 16 12 C 0.17 3.88 5.04 -3.72 -0.02 3.86 16 13 N -0.59 -13.41 2.99 -172.34 -0.52 -13.93 16 14 C -0.26 -6.60 9.57 -15.06 -0.14 -6.75 16 15 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 16 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 17 N -0.90 -25.00 11.25 55.49 0.62 -24.37 16 18 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.15 2.74 5.50 -3.71 -0.02 2.72 16 23 C -0.12 -1.79 2.67 -90.50 -0.24 -2.03 16 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 25 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 26 C 0.12 1.63 6.91 -82.00 -0.57 1.06 16 27 C -0.10 -1.26 8.96 36.00 0.32 -0.94 16 28 N -0.25 -3.65 11.42 33.81 0.39 -3.26 16 29 N -0.22 -3.17 11.04 33.58 0.37 -2.80 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 35 H 0.15 1.57 6.59 -52.49 -0.35 1.23 16 36 H 0.40 5.45 4.95 -40.82 -0.20 5.25 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.20 6.12 -51.94 -0.32 1.88 16 40 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 43 H 0.01 0.18 6.64 -51.93 -0.35 -0.17 16 44 H 0.05 0.56 7.54 -51.93 -0.39 0.17 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 49 H 0.10 1.34 5.95 -51.93 -0.31 1.04 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -29.73 384.78 -8.33 -38.06 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.72 Total: 4.52 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.12 Total: -0.79 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.67 Total: -54.68 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.73 -8.33 -38.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942530708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.676 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds