Wall clock time and date at job start Tue Mar 31 2020 19:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30750 * 125.61317 * 2 1 4 4 C 1.33575 * 109.14582 * 180.02562 * 3 2 1 5 5 C 1.35030 * 107.97778 * 0.04602 * 4 3 2 6 6 N 1.35304 * 125.61739 * 180.02562 * 2 1 3 7 7 H 0.96999 * 126.49623 * 359.92531 * 6 2 1 8 8 C 1.50649 * 124.45137 * 179.84505 * 5 4 3 9 9 C 1.53405 * 108.38489 * 343.59507 * 8 5 4 10 10 H 1.09001 * 109.47372 * 289.64481 * 9 8 5 11 11 C 1.50704 * 109.47384 * 169.63884 * 9 8 5 12 12 O 1.21283 * 119.99347 * 273.97894 * 11 9 8 13 13 N 1.34768 * 120.00207 * 93.98175 * 11 9 8 14 14 C 1.47027 * 125.64900 * 355.05060 * 13 11 9 15 15 C 1.54330 * 107.26960 * 181.02144 * 14 13 11 16 16 C 1.55153 * 102.94351 * 22.19524 * 15 14 13 17 17 H 1.09002 * 111.00869 * 82.56553 * 16 15 14 18 18 N 1.46495 * 111.00654 * 206.38451 * 16 15 14 19 19 C 1.46503 * 120.00016 * 58.54216 * 18 16 15 20 20 C 1.36935 * 120.00161 * 238.54691 * 18 16 15 21 21 H 1.08001 * 119.99972 * 320.73654 * 20 18 16 22 22 C 1.38814 * 120.00182 * 140.74289 * 20 18 16 23 23 N 1.31616 * 120.00434 * 156.77688 * 22 20 18 24 24 Si 1.86809 * 119.99781 * 336.77066 * 22 20 18 25 25 H 1.48497 * 109.46732 * 95.12350 * 24 22 20 26 26 H 1.48495 * 109.47077 * 215.12557 * 24 22 20 27 27 H 1.48496 * 109.47138 * 335.12462 * 24 22 20 28 28 C 1.47426 * 125.64878 * 174.74200 * 13 11 9 29 29 C 1.53110 * 109.44351 * 49.64234 * 9 8 5 30 30 C 1.50866 * 128.03338 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47421 * 269.97810 * 1 2 3 32 32 H 1.09003 * 109.47305 * 29.97831 * 1 2 3 33 33 H 1.08995 * 109.47354 * 149.98037 * 1 2 3 34 34 H 1.08999 * 109.68377 * 223.87374 * 8 5 4 35 35 H 1.08997 * 109.68420 * 103.31416 * 8 5 4 36 36 H 1.08993 * 109.88067 * 300.43765 * 14 13 11 37 37 H 1.08994 * 109.88131 * 61.45256 * 14 13 11 38 38 H 1.08995 * 110.71466 * 140.55518 * 15 14 13 39 39 H 1.08998 * 110.71939 * 263.64917 * 15 14 13 40 40 H 1.08999 * 109.47153 * 84.69941 * 19 18 16 41 41 H 1.09000 * 109.47730 * 204.70195 * 19 18 16 42 42 H 1.09006 * 109.47054 * 324.70548 * 19 18 16 43 43 H 0.96995 * 119.99972 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.36708 * 274.74581 * 28 13 11 45 45 H 1.09003 * 110.36833 * 37.06986 * 28 13 11 46 46 H 1.08999 * 109.46557 * 50.01049 * 29 9 8 47 47 H 1.09007 * 109.46028 * 169.96743 * 29 9 8 48 48 H 1.09009 * 109.67121 * 43.59840 * 30 4 3 49 49 H 1.08995 * 109.71041 * 283.07339 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0630 0.0000 4 6 3.5493 0.6843 -0.0006 5 6 3.5849 -0.6655 -0.0020 6 7 2.2950 -1.0999 -0.0005 7 1 1.9971 -2.0230 0.0001 8 6 4.8492 -1.4847 -0.0063 9 6 6.0135 -0.5754 -0.4199 10 1 5.9196 -0.3225 -1.4760 11 6 7.3182 -1.2935 -0.1893 12 8 7.8487 -1.2520 0.9005 13 7 7.8954 -1.9817 -1.1941 14 6 7.3152 -2.1998 -2.5273 15 6 8.3167 -3.0590 -3.3278 16 6 9.1473 -3.7516 -2.2153 17 1 8.6321 -4.6335 -1.8347 18 7 10.4867 -4.0968 -2.6978 19 6 11.3756 -3.0482 -3.2045 20 6 10.9079 -5.3996 -2.6754 21 1 10.6549 -6.0346 -1.8392 22 6 11.6602 -5.9041 -3.7273 23 7 12.4383 -6.9486 -3.5384 24 14 11.5679 -5.1005 -5.4112 25 1 12.6776 -4.1243 -5.5552 26 1 11.6847 -6.1416 -6.4636 27 1 10.2680 -4.3967 -5.5533 28 6 9.2159 -2.6349 -1.1405 29 6 5.9812 0.7063 0.4169 30 6 4.7776 1.5604 -0.0003 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 4.7530 -2.3045 -0.7181 35 1 5.0316 -1.8836 0.9915 36 1 6.3651 -2.7261 -2.4365 37 1 7.1626 -1.2429 -3.0262 38 1 7.7925 -3.7976 -3.9341 39 1 8.9515 -2.4301 -3.9519 40 1 11.9039 -2.5857 -2.3708 41 1 12.0974 -3.4856 -3.8943 42 1 10.7868 -2.2931 -3.7253 43 1 12.9642 -7.3008 -4.2734 44 1 10.0027 -1.9204 -1.3823 45 1 9.3853 -3.0678 -0.1546 46 1 5.8961 0.4488 1.4726 47 1 6.9000 1.2697 0.2538 48 1 4.6448 2.3782 0.7082 49 1 4.9418 1.9635 -0.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971818803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:38 Heat of formation + Delta-G solvation = 39.628815 kcal Electronic energy + Delta-G solvation = -28873.476953 eV Core-core repulsion = 25029.604888 eV Total energy + Delta-G solvation = -3843.872065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 13.02 seconds Orbital eigenvalues (eV) -42.60955 -40.14366 -37.93310 -36.29616 -35.01178 -33.44323 -31.96169 -31.56833 -30.49605 -29.97775 -28.52642 -27.54523 -26.24588 -24.27216 -23.36380 -22.58933 -22.26238 -21.12097 -19.65972 -19.46171 -18.71648 -17.68906 -17.11433 -17.07291 -16.14777 -15.91703 -15.32801 -15.09117 -14.71658 -14.23095 -14.06761 -13.92850 -13.80720 -13.63067 -13.39444 -13.23639 -13.13487 -12.95548 -12.85201 -12.64688 -12.33103 -12.21784 -12.05766 -12.02681 -11.75553 -11.49298 -11.25957 -11.13751 -10.97433 -10.84028 -10.58611 -10.26138 -10.13536 -10.07696 -10.03462 -9.71677 -9.64979 -8.64609 -8.44996 -8.28440 -6.91629 -6.09537 -3.53724 1.70557 2.52322 2.79080 2.84479 3.08318 3.25257 3.40048 3.44407 3.99771 4.29795 4.43704 4.49417 4.49970 4.70447 4.74538 4.82944 4.87703 4.99787 5.08990 5.10204 5.10922 5.17664 5.23206 5.30867 5.33710 5.37292 5.40561 5.51474 5.62227 5.67683 5.68427 5.77637 5.85271 5.88529 6.01834 6.07233 6.09447 6.17028 6.28546 6.38942 6.41747 6.51520 6.59929 6.65426 6.75914 7.08883 7.65382 7.83537 7.94885 8.23376 8.29964 8.86626 9.59505 9.99612 11.05389 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.002426 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.990056 B =11537.830584 C =11956.780205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.198 3.802 3 N -0.481 5.481 4 C 0.009 3.991 5 C -0.022 4.022 6 N -0.557 5.557 7 H 0.419 0.581 8 C -0.029 4.029 9 C -0.094 4.094 10 H 0.094 0.906 11 C 0.532 3.468 12 O -0.540 6.540 13 N -0.613 5.613 14 C 0.103 3.897 15 C -0.158 4.158 16 C 0.172 3.828 17 H 0.087 0.913 18 N -0.594 5.594 19 C 0.107 3.893 20 C -0.277 4.277 21 H 0.079 0.921 22 C 0.039 3.961 23 N -0.894 5.894 24 Si 0.880 3.120 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.267 1.267 28 C 0.087 3.913 29 C -0.099 4.099 30 C -0.033 4.033 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.051 0.949 42 H 0.029 0.971 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.903 13.737 3.843 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 N -0.201 5.201 4 C -0.121 4.121 5 C -0.138 4.138 6 N -0.160 5.160 7 H 0.256 0.744 8 C -0.068 4.068 9 C -0.116 4.116 10 H 0.113 0.887 11 C 0.319 3.681 12 O -0.418 6.418 13 N -0.347 5.347 14 C -0.021 4.021 15 C -0.198 4.198 16 C 0.063 3.937 17 H 0.106 0.894 18 N -0.316 5.316 19 C -0.037 4.037 20 C -0.405 4.405 21 H 0.097 0.903 22 C -0.162 4.162 23 N -0.534 5.534 24 Si 0.709 3.291 25 H -0.214 1.214 26 H -0.229 1.229 27 H -0.192 1.192 28 C -0.037 4.037 29 C -0.138 4.138 30 C -0.071 4.071 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.036 0.964 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.765 14.496 4.410 26.520 hybrid contribution 0.122 -1.007 -1.235 1.598 sum -21.643 13.488 3.175 25.699 Atomic orbital electron populations 1.20161 0.84747 1.04032 1.03508 1.23308 0.95453 0.81334 1.06363 1.69932 1.01713 1.28574 1.19917 1.20526 0.92830 0.91115 1.07629 1.20776 0.85469 0.95572 1.12025 1.42776 1.06096 1.10017 1.57101 0.74363 1.19905 0.87686 0.96077 1.03091 1.21260 0.91739 0.96128 1.02519 0.88737 1.20083 0.86071 0.78654 0.83261 1.90705 1.65257 1.62035 1.23753 1.48536 1.20331 1.52658 1.13140 1.22057 0.97332 0.99594 0.83080 1.23266 0.97859 0.99224 0.99453 1.21648 0.86709 0.94657 0.90712 0.89450 1.43938 1.09231 1.04439 1.74005 1.21352 0.93767 0.91455 0.97153 1.18757 1.32207 0.86479 1.03053 0.90301 1.25527 0.97267 0.95578 0.97857 1.69882 1.25559 1.25943 1.32043 0.86884 0.78559 0.78125 0.85512 1.21376 1.22853 1.19193 1.22924 0.83119 0.95822 1.01815 1.21463 0.98075 0.93811 1.00430 1.19963 0.88488 0.96237 1.02391 0.90221 0.89117 0.90856 0.90252 0.89528 0.91805 0.91907 0.90280 0.90729 0.96375 0.93039 0.95232 0.92545 0.91440 0.90525 0.90382 0.90465 0.89987 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.20 1.85 8.16 -154.97 -1.26 0.58 16 3 N -0.48 -5.91 11.25 -6.95 -0.08 -5.98 16 4 C 0.01 0.10 6.98 -82.89 -0.58 -0.48 16 5 C -0.02 -0.23 7.08 -81.86 -0.58 -0.81 16 6 N -0.56 -4.57 6.14 -6.54 -0.04 -4.62 16 7 H 0.42 2.08 8.96 -40.82 -0.37 1.72 16 8 C -0.03 -0.28 5.59 -27.70 -0.15 -0.43 16 9 C -0.09 -1.01 2.12 -91.50 -0.19 -1.20 16 10 H 0.09 0.90 6.96 -51.93 -0.36 0.54 16 11 C 0.53 7.57 6.82 -10.99 -0.07 7.49 16 12 O -0.54 -9.69 16.66 5.56 0.09 -9.59 16 13 N -0.61 -8.77 3.32 -170.37 -0.57 -9.34 16 14 C 0.10 1.23 6.17 -3.06 -0.02 1.21 16 15 C -0.16 -2.37 6.52 -24.89 -0.16 -2.53 16 16 C 0.17 3.15 3.56 -65.66 -0.23 2.91 16 17 H 0.09 1.65 7.96 -51.93 -0.41 1.24 16 18 N -0.59 -13.33 2.48 -170.89 -0.42 -13.75 16 19 C 0.11 2.22 8.16 59.85 0.49 2.71 16 20 C -0.28 -7.42 9.84 -15.06 -0.15 -7.56 16 21 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 22 C 0.04 1.09 5.24 -17.43 -0.09 1.00 16 23 N -0.89 -26.52 13.97 55.49 0.78 -25.74 16 24 Si 0.88 21.23 25.22 -169.99 -4.29 16.94 16 25 H -0.29 -6.77 6.68 56.52 0.38 -6.39 16 26 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 C 0.09 1.48 6.50 -2.41 -0.02 1.46 16 29 C -0.10 -1.03 4.71 -26.48 -0.12 -1.16 16 30 C -0.03 -0.32 6.30 -27.61 -0.17 -0.49 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.09 0.90 8.11 -51.93 -0.42 0.47 16 36 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.16 6.28 -51.93 -0.33 0.84 16 40 H 0.02 0.36 7.90 -51.93 -0.41 -0.05 16 41 H 0.05 1.16 3.84 -51.93 -0.20 0.96 16 42 H 0.03 0.53 6.30 -51.93 -0.33 0.21 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 44 H 0.07 1.18 6.93 -51.93 -0.36 0.82 16 45 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 46 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.08 0.79 8.11 -51.92 -0.42 0.37 16 48 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -33.86 380.79 -9.54 -43.41 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.80 Total: 0.18 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.95 Total: 2.75 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.33 Total: -59.43 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.29 Total: 16.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.86 -9.54 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971818803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.035 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.02 seconds