Wall clock time and date at job start Tue Mar 31 2020 19:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30750 * 125.61317 * 2 1 4 4 C 1.33575 * 109.14582 * 180.02562 * 3 2 1 5 5 C 1.35030 * 107.97778 * 0.04602 * 4 3 2 6 6 N 1.35304 * 125.61739 * 180.02562 * 2 1 3 7 7 H 0.96999 * 126.49623 * 359.92531 * 6 2 1 8 8 C 1.50649 * 124.45137 * 179.84505 * 5 4 3 9 9 C 1.53405 * 108.38489 * 343.59507 * 8 5 4 10 10 H 1.09001 * 109.47372 * 289.64481 * 9 8 5 11 11 C 1.50704 * 109.47384 * 169.63884 * 9 8 5 12 12 O 1.21283 * 119.99347 * 273.97894 * 11 9 8 13 13 N 1.34768 * 120.00207 * 93.98175 * 11 9 8 14 14 C 1.47027 * 125.64900 * 355.05060 * 13 11 9 15 15 C 1.54330 * 107.26960 * 181.02144 * 14 13 11 16 16 C 1.55153 * 102.94351 * 22.19524 * 15 14 13 17 17 H 1.09002 * 111.00869 * 82.56553 * 16 15 14 18 18 N 1.46495 * 111.00654 * 206.38451 * 16 15 14 19 19 C 1.46503 * 120.00016 * 58.54216 * 18 16 15 20 20 C 1.36935 * 120.00161 * 238.54691 * 18 16 15 21 21 H 1.08001 * 119.99972 * 320.73654 * 20 18 16 22 22 C 1.38814 * 120.00182 * 140.74289 * 20 18 16 23 23 N 1.31616 * 120.00434 * 156.77688 * 22 20 18 24 24 Si 1.86809 * 119.99781 * 336.77066 * 22 20 18 25 25 H 1.48497 * 109.46732 * 95.12350 * 24 22 20 26 26 H 1.48495 * 109.47077 * 215.12557 * 24 22 20 27 27 H 1.48496 * 109.47138 * 335.12462 * 24 22 20 28 28 C 1.47426 * 125.64878 * 174.74200 * 13 11 9 29 29 C 1.53110 * 109.44351 * 49.64234 * 9 8 5 30 30 C 1.50866 * 128.03338 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47421 * 269.97810 * 1 2 3 32 32 H 1.09003 * 109.47305 * 29.97831 * 1 2 3 33 33 H 1.08995 * 109.47354 * 149.98037 * 1 2 3 34 34 H 1.08999 * 109.68377 * 223.87374 * 8 5 4 35 35 H 1.08997 * 109.68420 * 103.31416 * 8 5 4 36 36 H 1.08993 * 109.88067 * 300.43765 * 14 13 11 37 37 H 1.08994 * 109.88131 * 61.45256 * 14 13 11 38 38 H 1.08995 * 110.71466 * 140.55518 * 15 14 13 39 39 H 1.08998 * 110.71939 * 263.64917 * 15 14 13 40 40 H 1.08999 * 109.47153 * 84.69941 * 19 18 16 41 41 H 1.09000 * 109.47730 * 204.70195 * 19 18 16 42 42 H 1.09006 * 109.47054 * 324.70548 * 19 18 16 43 43 H 0.96995 * 119.99972 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.36708 * 274.74581 * 28 13 11 45 45 H 1.09003 * 110.36833 * 37.06986 * 28 13 11 46 46 H 1.08999 * 109.46557 * 50.01049 * 29 9 8 47 47 H 1.09007 * 109.46028 * 169.96743 * 29 9 8 48 48 H 1.09009 * 109.67121 * 43.59840 * 30 4 3 49 49 H 1.08995 * 109.71041 * 283.07339 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0630 0.0000 4 6 3.5493 0.6843 -0.0006 5 6 3.5849 -0.6655 -0.0020 6 7 2.2950 -1.0999 -0.0005 7 1 1.9971 -2.0230 0.0001 8 6 4.8492 -1.4847 -0.0063 9 6 6.0135 -0.5754 -0.4199 10 1 5.9196 -0.3225 -1.4760 11 6 7.3182 -1.2935 -0.1893 12 8 7.8487 -1.2520 0.9005 13 7 7.8954 -1.9817 -1.1941 14 6 7.3152 -2.1998 -2.5273 15 6 8.3167 -3.0590 -3.3278 16 6 9.1473 -3.7516 -2.2153 17 1 8.6321 -4.6335 -1.8347 18 7 10.4867 -4.0968 -2.6978 19 6 11.3756 -3.0482 -3.2045 20 6 10.9079 -5.3996 -2.6754 21 1 10.6549 -6.0346 -1.8392 22 6 11.6602 -5.9041 -3.7273 23 7 12.4383 -6.9486 -3.5384 24 14 11.5679 -5.1005 -5.4112 25 1 12.6776 -4.1243 -5.5552 26 1 11.6847 -6.1416 -6.4636 27 1 10.2680 -4.3967 -5.5533 28 6 9.2159 -2.6349 -1.1405 29 6 5.9812 0.7063 0.4169 30 6 4.7776 1.5604 -0.0003 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5141 34 1 4.7530 -2.3045 -0.7181 35 1 5.0316 -1.8836 0.9915 36 1 6.3651 -2.7261 -2.4365 37 1 7.1626 -1.2429 -3.0262 38 1 7.7925 -3.7976 -3.9341 39 1 8.9515 -2.4301 -3.9519 40 1 11.9039 -2.5857 -2.3708 41 1 12.0974 -3.4856 -3.8943 42 1 10.7868 -2.2931 -3.7253 43 1 12.9642 -7.3008 -4.2734 44 1 10.0027 -1.9204 -1.3823 45 1 9.3853 -3.0678 -0.1546 46 1 5.8961 0.4488 1.4726 47 1 6.9000 1.2697 0.2538 48 1 4.6448 2.3782 0.7082 49 1 4.9418 1.9635 -0.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971818803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:36 Heat of formation + Delta-G solvation = 17.516393 kcal Electronic energy + Delta-G solvation = -28874.435819 eV Core-core repulsion = 25029.604888 eV Total energy + Delta-G solvation = -3844.830931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.31903 -41.29316 -39.22769 -37.24698 -36.62017 -34.19723 -33.80906 -32.27401 -31.67695 -30.91503 -29.69754 -28.39189 -28.04032 -25.63300 -24.22012 -23.95120 -23.22521 -21.79354 -21.00665 -20.52041 -19.64722 -19.02119 -18.52213 -18.05507 -17.69843 -16.75914 -16.71266 -16.19654 -15.90608 -15.32312 -15.15399 -14.90642 -14.83081 -14.70536 -14.61108 -14.40746 -14.30968 -14.05716 -13.95874 -13.67875 -13.44618 -13.36546 -13.24515 -13.03041 -12.74633 -12.61516 -12.46738 -12.42981 -12.26130 -12.09312 -12.04099 -11.91325 -11.64668 -11.43820 -10.94848 -10.82265 -10.77892 -10.65775 -9.67897 -9.00482 -8.76589 -8.21992 -5.63588 1.00766 1.34959 1.44473 1.50009 1.56706 1.87270 2.06222 2.20045 2.43255 3.02545 3.25003 3.34134 3.47156 3.67352 3.76058 3.84308 3.92472 4.09867 4.14193 4.15908 4.18107 4.30126 4.35313 4.40156 4.51310 4.53502 4.56974 4.60576 4.71121 4.74997 4.76864 4.78225 4.84295 4.89164 4.99493 5.00061 5.02728 5.12048 5.18083 5.18961 5.25773 5.26365 5.32108 5.37540 5.78773 5.91089 6.16969 6.53516 6.53881 6.94375 7.10733 7.12970 7.57975 8.00689 8.97190 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.023623 B = 0.002426 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.990056 B =11537.830584 C =11956.780205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.199 3.801 3 N -0.523 5.523 4 C -0.015 4.015 5 C -0.027 4.027 6 N -0.548 5.548 7 H 0.434 0.566 8 C -0.022 4.022 9 C -0.083 4.083 10 H 0.117 0.883 11 C 0.532 3.468 12 O -0.584 6.584 13 N -0.612 5.612 14 C 0.106 3.894 15 C -0.148 4.148 16 C 0.165 3.835 17 H 0.072 0.928 18 N -0.607 5.607 19 C 0.106 3.894 20 C -0.268 4.268 21 H 0.037 0.963 22 C -0.019 4.019 23 N -0.947 5.947 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.310 1.310 27 H -0.243 1.243 28 C 0.097 3.903 29 C -0.094 4.094 30 C -0.026 4.026 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.264 0.736 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.718 15.626 1.852 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 N -0.243 5.243 4 C -0.145 4.145 5 C -0.144 4.144 6 N -0.152 5.152 7 H 0.275 0.725 8 C -0.061 4.061 9 C -0.104 4.104 10 H 0.135 0.865 11 C 0.322 3.678 12 O -0.464 6.464 13 N -0.345 5.345 14 C -0.016 4.016 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.091 0.909 18 N -0.330 5.330 19 C -0.038 4.038 20 C -0.397 4.397 21 H 0.054 0.946 22 C -0.216 4.216 23 N -0.590 5.590 24 Si 0.776 3.224 25 H -0.204 1.204 26 H -0.239 1.239 27 H -0.167 1.167 28 C -0.028 4.028 29 C -0.132 4.132 30 C -0.064 4.064 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.636 16.410 2.411 29.699 hybrid contribution 0.957 -1.605 -0.439 1.919 sum -23.679 14.806 1.972 27.996 Atomic orbital electron populations 1.20330 0.82075 1.05292 1.04592 1.24026 0.96895 0.80985 1.04499 1.69919 1.02361 1.30275 1.21784 1.20828 0.93159 0.92021 1.08484 1.20754 0.86237 0.95206 1.12211 1.42754 1.05325 1.10787 1.56339 0.72545 1.19834 0.87040 0.96213 1.03017 1.21224 0.89723 0.95668 1.03826 0.86464 1.20720 0.86761 0.77992 0.82355 1.90692 1.66619 1.63497 1.25601 1.48573 1.19299 1.52230 1.14376 1.22229 0.97142 1.01027 0.81159 1.23139 0.97886 0.99428 0.98349 1.21676 0.85247 0.94876 0.92485 0.90949 1.43958 1.11379 1.03126 1.74546 1.21407 0.93765 0.91457 0.97204 1.18590 1.31466 0.88045 1.01616 0.94561 1.26199 0.97118 0.96595 1.01715 1.70023 1.27322 1.28582 1.33054 0.85771 0.79782 0.77078 0.79763 1.20399 1.23851 1.16659 1.22576 0.84895 0.95406 0.99895 1.21390 0.98440 0.93950 0.99457 1.19917 0.87720 0.95870 1.02936 0.89130 0.89140 0.88299 0.88315 0.90695 0.89071 0.88670 0.89484 0.90538 0.96035 0.94842 0.91725 0.92692 0.91688 0.93179 0.92093 0.90435 0.90131 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.20 3.27 8.16 137.97 1.13 4.39 16 3 N -0.52 -12.04 11.25 -175.89 -1.98 -14.02 16 4 C -0.02 -0.33 6.98 41.61 0.29 -0.04 16 5 C -0.03 -0.49 7.08 41.14 0.29 -0.20 16 6 N -0.55 -7.57 6.14 -174.59 -1.07 -8.64 16 7 H 0.43 3.01 8.96 -92.71 -0.83 2.17 16 8 C -0.02 -0.37 5.59 29.97 0.17 -0.21 16 9 C -0.08 -1.55 2.12 -11.37 -0.02 -1.57 16 10 H 0.12 1.71 6.96 -2.39 -0.02 1.69 16 11 C 0.53 14.28 6.82 87.66 0.60 14.87 16 12 O -0.58 -20.95 16.66 -3.04 -0.05 -21.00 16 13 N -0.61 -16.05 3.32 -811.34 -2.70 -18.74 16 14 C 0.11 2.05 6.17 86.73 0.53 2.59 16 15 C -0.15 -3.88 6.52 31.78 0.21 -3.68 16 16 C 0.17 5.86 3.56 46.46 0.17 6.02 16 17 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 18 N -0.61 -26.92 2.48 -694.58 -1.72 -28.64 16 19 C 0.11 4.18 8.16 127.77 1.04 5.23 16 20 C -0.27 -14.72 9.84 84.03 0.83 -13.89 16 21 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 22 C -0.02 -1.08 5.24 84.86 0.44 -0.64 16 23 N -0.95 -58.07 13.97 21.65 0.30 -57.77 16 24 Si 0.95 43.61 25.22 68.60 1.73 45.34 16 25 H -0.28 -12.24 6.68 99.48 0.66 -11.57 16 26 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 27 H -0.24 -10.12 7.11 99.48 0.71 -9.41 16 28 C 0.10 3.23 6.50 86.93 0.56 3.80 16 29 C -0.09 -1.83 4.71 30.76 0.14 -1.68 16 30 C -0.03 -0.48 6.30 30.03 0.19 -0.29 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 34 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 36 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.10 1.35 7.72 -2.39 -0.02 1.33 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 2.01 6.28 -2.39 -0.02 2.00 16 40 H 0.02 0.83 7.90 -2.39 -0.02 0.81 16 41 H 0.03 1.45 3.84 -2.39 -0.01 1.44 16 42 H 0.06 2.10 6.30 -2.38 -0.02 2.09 16 43 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 44 H 0.06 2.20 6.93 -2.39 -0.02 2.18 16 45 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 46 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 47 H 0.08 1.49 8.11 -2.38 -0.02 1.47 16 48 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.98 380.79 1.92 -75.06 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.09 Total: 13.46 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 7.32 Total: 14.96 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -7.17 Total: -127.81 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.73 Total: 45.34 kcal Total: -76.98 1.92 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971818803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.578 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds