Wall clock time and date at job start Tue Mar 31 2020 16:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30781 * 125.72441 * 2 1 4 4 C 1.34431 * 109.32224 * 180.02562 * 3 2 1 5 5 C 1.33853 * 107.79755 * 0.02562 * 4 3 2 6 6 N 1.34414 * 125.72385 * 180.02562 * 2 1 3 7 7 C 1.46473 * 128.44270 * 359.76756 * 6 2 1 8 8 C 1.53280 * 108.68935 * 197.36286 * 7 6 2 9 9 C 1.53108 * 109.70825 * 309.22810 * 8 7 6 10 10 H 1.09009 * 109.52469 * 309.94661 * 9 8 7 11 11 C 1.50701 * 109.50023 * 189.86374 * 9 8 7 12 12 O 1.21276 * 119.99730 * 341.46661 * 11 9 8 13 13 N 1.34774 * 120.00031 * 161.46043 * 11 9 8 14 14 C 1.47423 * 125.64879 * 174.15462 * 13 11 9 15 15 C 1.54914 * 104.83204 * 155.90651 * 14 13 11 16 16 C 1.55159 * 101.58266 * 37.01042 * 15 14 13 17 17 H 1.08999 * 110.72010 * 83.03455 * 16 15 14 18 18 N 1.46491 * 110.71943 * 206.13489 * 16 15 14 19 19 C 1.46503 * 119.99972 * 56.15504 * 18 16 15 20 20 C 1.36933 * 120.00347 * 236.16036 * 18 16 15 21 21 H 1.08002 * 119.99895 * 338.46126 * 20 18 16 22 22 C 1.38812 * 120.00672 * 158.46967 * 20 18 16 23 23 N 1.31615 * 119.99569 * 347.50091 * 22 20 18 24 24 Si 1.86798 * 120.00199 * 167.50607 * 22 20 18 25 25 H 1.48497 * 109.47093 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47021 * 119.99464 * 24 22 20 27 27 H 1.48501 * 109.46943 * 239.99702 * 24 22 20 28 28 C 1.47327 * 125.61490 * 354.37716 * 13 11 9 29 29 C 1.50712 * 128.68182 * 179.90109 * 5 4 3 30 30 H 1.08996 * 109.47240 * 90.02336 * 1 2 3 31 31 H 1.08996 * 109.46760 * 210.02137 * 1 2 3 32 32 H 1.09002 * 109.46956 * 330.02512 * 1 2 3 33 33 H 1.07996 * 126.09602 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.59332 * 317.12598 * 7 6 2 35 35 H 1.08996 * 109.59914 * 77.60075 * 7 6 2 36 36 H 1.09000 * 109.42795 * 189.15274 * 8 7 6 37 37 H 1.09001 * 109.43183 * 69.30160 * 8 7 6 38 38 H 1.08997 * 110.36670 * 37.06611 * 14 13 11 39 39 H 1.09001 * 110.45780 * 274.78979 * 14 13 11 40 40 H 1.09001 * 111.00222 * 278.93546 * 15 14 13 41 41 H 1.09003 * 110.99920 * 155.08233 * 15 14 13 42 42 H 1.09006 * 109.47412 * 269.98628 * 19 18 16 43 43 H 1.09006 * 109.47204 * 149.99045 * 19 18 16 44 44 H 1.08997 * 109.47351 * 29.99236 * 19 18 16 45 45 H 0.97004 * 120.00005 * 180.02562 * 23 22 20 46 46 H 1.08996 * 110.06513 * 61.67867 * 28 13 11 47 47 H 1.09001 * 109.84935 * 300.41722 * 28 13 11 48 48 H 1.09008 * 109.74062 * 76.05371 * 29 5 4 49 49 H 1.08993 * 109.78848 * 315.36047 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8922 -2.5004 0.0035 8 6 3.0928 -3.3502 0.4345 9 6 4.3184 -2.9746 -0.4028 10 1 4.0544 -2.9855 -1.4604 11 6 5.4237 -3.9673 -0.1501 12 8 5.3945 -4.6686 0.8389 13 7 6.4446 -4.0758 -1.0233 14 6 7.6456 -4.9113 -0.8414 15 6 8.1606 -5.1832 -2.2769 16 6 7.8657 -3.8294 -2.9754 17 1 8.6624 -3.1122 -2.7783 18 7 7.6857 -4.0183 -4.4168 19 6 6.6738 -4.9548 -4.9122 20 6 8.4633 -3.3196 -5.3013 21 1 8.9465 -2.4052 -4.9902 22 6 8.6304 -3.7864 -6.5979 23 7 8.2549 -5.0085 -6.9108 24 14 9.3884 -2.6803 -7.8984 25 1 9.7220 -1.3647 -7.2960 26 1 10.6248 -3.3116 -8.4257 27 1 8.4203 -2.4852 -9.0075 28 6 6.5467 -3.3753 -2.3153 29 6 4.7919 -1.5690 -0.0044 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 4.4170 1.3396 -0.0003 34 1 1.0707 -2.6454 0.7052 35 1 1.5770 -2.7939 -0.9977 36 1 2.8620 -4.4052 0.2867 37 1 3.3048 -3.1703 1.4885 38 1 7.3852 -5.8476 -0.3481 39 1 8.3986 -4.3754 -0.2635 40 1 7.6026 -5.9941 -2.7451 41 1 9.2295 -5.3969 -2.2745 42 1 7.1176 -5.9443 -5.0228 43 1 6.3040 -4.6124 -5.8788 44 1 5.8470 -5.0045 -4.2038 45 1 8.3720 -5.3348 -7.8167 46 1 6.5639 -2.2972 -2.1558 47 1 5.7025 -3.6448 -2.9501 48 1 5.2366 -1.5960 0.9904 49 1 5.5261 -1.2115 -0.7263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972337746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:05 Heat of formation + Delta-G solvation = 32.423088 kcal Electronic energy + Delta-G solvation = -29338.506431 eV Core-core repulsion = 25494.321903 eV Total energy + Delta-G solvation = -3844.184528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.37831 -41.28061 -39.14685 -37.27361 -36.47946 -34.47739 -33.37621 -32.33644 -31.40019 -30.61641 -29.31730 -28.05596 -27.70001 -25.58595 -25.10011 -24.29340 -22.84993 -21.63856 -21.03601 -20.38157 -19.71181 -18.93047 -18.26404 -17.79089 -17.34321 -17.08491 -16.59891 -16.25881 -15.82785 -15.21642 -15.17234 -15.03020 -14.97037 -14.74414 -14.48669 -14.39148 -14.10834 -13.96875 -13.84855 -13.71408 -13.22844 -13.14572 -13.00261 -12.87949 -12.81696 -12.79905 -12.52581 -12.34480 -12.27214 -12.18940 -12.07497 -12.00868 -11.80791 -11.51488 -11.06653 -10.80024 -10.61443 -10.46862 -9.66371 -9.17243 -8.81374 -7.84068 -5.29752 1.05601 1.48216 1.48662 1.51397 1.60179 1.80889 1.91556 2.12636 2.51749 3.15486 3.31287 3.46663 3.49715 3.60408 3.63069 3.76958 3.82455 3.89675 4.01641 4.11159 4.22051 4.28259 4.31227 4.34033 4.42275 4.44176 4.56023 4.58406 4.67580 4.71485 4.75849 4.78161 4.83602 4.92585 4.94317 4.98314 5.04579 5.08669 5.14714 5.25071 5.35002 5.39680 5.41427 5.65119 5.73409 5.78273 6.30507 6.31811 6.47867 7.04158 7.12042 7.15097 7.85484 8.28845 9.20910 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003081 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.697757 B = 9085.416657 C =10360.261191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.535 5.535 4 C -0.041 4.041 5 C -0.026 4.026 6 N -0.454 5.454 7 C 0.103 3.897 8 C -0.108 4.108 9 C -0.101 4.101 10 H 0.102 0.898 11 C 0.536 3.464 12 O -0.577 6.577 13 N -0.610 5.610 14 C 0.113 3.887 15 C -0.142 4.142 16 C 0.164 3.836 17 H 0.085 0.915 18 N -0.601 5.601 19 C 0.181 3.819 20 C -0.260 4.260 21 H 0.079 0.921 22 C -0.051 4.051 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.295 1.295 28 C 0.092 3.908 29 C -0.023 4.023 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.081 0.919 42 H -0.004 1.004 43 H 0.026 0.974 44 H 0.024 0.976 45 H 0.247 0.753 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 4.938 15.246 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 N -0.255 5.255 4 C -0.188 4.188 5 C -0.141 4.141 6 N -0.138 5.138 7 C -0.017 4.017 8 C -0.146 4.146 9 C -0.122 4.122 10 H 0.120 0.880 11 C 0.326 3.674 12 O -0.458 6.458 13 N -0.343 5.343 14 C -0.009 4.009 15 C -0.182 4.182 16 C 0.056 3.944 17 H 0.103 0.897 18 N -0.322 5.322 19 C 0.036 3.964 20 C -0.390 4.390 21 H 0.096 0.904 22 C -0.246 4.246 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.032 4.032 29 C -0.062 4.062 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.194 0.806 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.015 0.985 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.647 5.165 15.636 21.387 hybrid contribution 1.127 -0.647 -1.218 1.781 sum -12.520 4.518 14.418 19.622 Atomic orbital electron populations 1.20330 0.82297 1.05159 1.04544 1.23837 0.97093 0.80936 1.04315 1.70424 1.02695 1.29734 1.22647 1.22095 0.95102 0.92711 1.08901 1.21042 0.86060 0.95119 1.11889 1.45476 1.05835 1.08202 1.54249 1.22255 0.98634 0.75781 1.05073 1.21644 0.91822 1.00993 1.00153 1.21369 0.94040 0.93920 1.02906 0.88020 1.20400 0.82076 0.83431 0.81506 1.90670 1.78333 1.46820 1.29951 1.48621 1.20223 1.45527 1.19881 1.22198 0.86512 0.95178 0.97053 1.23205 1.01595 0.99338 0.94094 1.21484 0.94617 0.95492 0.82854 0.89702 1.44053 1.39445 1.48468 1.00263 1.20453 0.88791 0.91839 0.95324 1.19638 1.24240 1.02706 0.92424 0.90360 1.25706 1.01253 0.96919 1.00727 1.70240 1.53277 1.16176 1.18825 0.85222 0.77141 0.78894 0.79289 1.18812 1.22325 1.22173 1.22697 1.00436 0.97060 0.83041 1.20053 0.93243 0.89426 1.03485 0.89145 0.88470 0.89103 0.80551 0.85942 0.87940 0.88340 0.90789 0.91169 0.89915 0.92570 0.90057 0.98538 0.95562 0.95725 0.94375 0.89823 0.91645 0.89592 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.24 71.24 0.73 -0.04 16 2 C 0.20 4.23 7.94 138.25 1.10 5.33 16 3 N -0.53 -14.49 11.27 -188.78 -2.13 -16.62 16 4 C -0.04 -1.04 11.84 83.30 0.99 -0.05 16 5 C -0.03 -0.59 6.57 40.73 0.27 -0.32 16 6 N -0.45 -8.81 3.13 -500.13 -1.57 -10.37 16 7 C 0.10 1.32 6.68 86.48 0.58 1.90 16 8 C -0.11 -1.81 4.57 30.72 0.14 -1.67 16 9 C -0.10 -2.05 1.99 -11.31 -0.02 -2.08 16 10 H 0.10 2.05 7.50 -2.38 -0.02 2.03 16 11 C 0.54 14.25 6.98 87.66 0.61 14.86 16 12 O -0.58 -18.71 16.37 -3.02 -0.05 -18.76 16 13 N -0.61 -16.52 3.33 -811.02 -2.70 -19.23 16 14 C 0.11 3.06 6.94 86.86 0.60 3.66 16 15 C -0.14 -4.51 6.64 31.99 0.21 -4.30 16 16 C 0.16 5.70 3.43 46.18 0.16 5.86 16 17 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 18 N -0.60 -27.14 2.93 -696.14 -2.04 -29.19 16 19 C 0.18 8.33 7.65 127.77 0.98 9.31 16 20 C -0.26 -13.15 9.63 84.03 0.81 -12.35 16 21 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 22 C -0.05 -2.71 5.08 84.86 0.43 -2.28 16 23 N -0.94 -53.22 10.62 21.65 0.23 -52.99 16 24 Si 0.97 43.11 29.57 68.60 2.03 45.14 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 28 C 0.09 2.62 5.80 86.67 0.50 3.12 16 29 C -0.02 -0.47 5.60 30.04 0.17 -0.30 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.62 7.59 -2.39 -0.02 0.60 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.18 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.12 0.91 7.72 -2.39 -0.02 0.89 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.59 8.07 -2.39 -0.02 1.57 16 37 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 38 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.01 7.14 -2.39 -0.02 1.99 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.00 -0.19 7.60 -2.38 -0.02 -0.21 16 43 H 0.03 1.33 6.87 -2.38 -0.02 1.31 16 44 H 0.02 0.97 6.36 -2.39 -0.02 0.95 16 45 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 46 H 0.08 2.09 6.91 -2.39 -0.02 2.08 16 47 H 0.07 2.00 6.06 -2.39 -0.01 1.98 16 48 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16 49 H 0.10 1.87 6.91 -2.39 -0.02 1.85 16 Total: -1.00 -69.14 381.91 2.96 -66.17 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.94 Total: 15.18 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 8.25 Total: 20.66 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -8.21 Total: -128.39 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.14 2.96 -66.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972337746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.597 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds