Wall clock time and date at job start Tue Mar 31 2020 19:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30860 * 125.41980 * 2 1 4 4 C 1.33320 * 109.68686 * 179.74421 * 3 2 1 5 5 C 1.36663 * 107.78587 * 0.38356 * 4 3 2 6 6 C 1.46759 * 126.84524 * 179.89718 * 5 4 3 7 7 O 1.21677 * 120.00253 * 185.01091 * 6 5 4 8 8 N 1.34780 * 120.00146 * 5.00539 * 6 5 4 9 9 C 1.46495 * 120.00136 * 174.70772 * 8 6 5 10 10 H 1.09004 * 109.01893 * 33.94343 * 9 8 6 11 11 C 1.52515 * 109.03702 * 274.99962 * 9 8 6 12 12 C 1.53839 * 111.66761 * 185.38654 * 11 9 8 13 13 C 1.51451 * 107.03920 * 57.19681 * 12 11 9 14 14 H 1.08994 * 110.21916 * 54.38354 * 13 12 11 15 15 C 1.52329 * 117.44550 * 181.23295 * 13 12 11 16 16 N 1.48245 * 105.86093 * 145.30499 * 15 13 12 17 17 C 1.36936 * 125.78246 * 176.79458 * 16 15 13 18 18 H 1.07995 * 120.00217 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00185 * 0.02889 * 17 16 15 20 20 N 1.31624 * 119.99803 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46860 * 90.00318 * 21 19 17 23 23 H 1.48498 * 109.47079 * 209.99889 * 21 19 17 24 24 H 1.48499 * 109.47392 * 330.00498 * 21 19 17 25 25 C 1.48657 * 108.43354 * 356.81882 * 16 15 13 26 26 C 1.53054 * 103.44368 * 335.62340 * 25 16 15 27 27 H 1.09001 * 110.55306 * 284.33047 * 26 25 16 28 28 C 1.51618 * 116.68165 * 156.96117 * 26 25 16 29 29 N 1.34495 * 125.42027 * 179.97438 * 2 1 3 30 30 C 1.46502 * 126.47302 * 359.97438 * 29 2 1 31 31 H 1.09004 * 109.47109 * 270.01935 * 1 2 3 32 32 H 1.09002 * 109.47298 * 30.02043 * 1 2 3 33 33 H 1.09002 * 109.47628 * 150.02133 * 1 2 3 34 34 H 1.07993 * 126.10410 * 180.27625 * 4 3 2 35 35 H 0.97004 * 119.99567 * 354.70909 * 8 6 5 36 36 H 1.09005 * 109.04125 * 64.82628 * 11 9 8 37 37 H 1.08996 * 109.04523 * 305.95116 * 11 9 8 38 38 H 1.08998 * 109.94073 * 297.81819 * 12 11 9 39 39 H 1.09003 * 109.94486 * 176.57954 * 12 11 9 40 40 H 1.09008 * 110.17407 * 26.21307 * 15 13 12 41 41 H 1.08996 * 110.17382 * 264.40427 * 15 13 12 42 42 H 0.97000 * 120.00116 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.62627 * 217.12857 * 25 16 15 44 44 H 1.09002 * 110.62284 * 94.11074 * 25 16 15 45 45 H 1.09001 * 109.94279 * 301.97262 * 28 26 25 46 46 H 1.09008 * 109.94265 * 63.21389 * 28 26 25 47 47 H 1.09007 * 109.46793 * 273.77833 * 30 29 2 48 48 H 1.09007 * 109.47025 * 33.77298 * 30 29 2 49 49 H 1.08998 * 109.47284 * 153.77942 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5976 -0.6608 0.0006 6 6 4.8028 -1.4982 0.0018 7 8 4.7039 -2.7071 -0.0951 8 7 6.0193 -0.9283 0.1103 9 6 7.2138 -1.7681 0.2283 10 1 7.0682 -2.6769 -0.3557 11 6 7.4147 -2.1445 1.6926 12 6 8.7279 -2.9170 1.9055 13 6 9.8483 -2.0386 1.3889 14 1 9.8094 -1.0592 1.8655 15 6 11.2651 -2.5935 1.4600 16 7 11.9641 -2.0748 0.2600 17 6 13.2835 -2.2748 -0.0471 18 1 13.6980 -1.8515 -0.9501 19 6 14.0883 -3.0219 0.8021 20 7 13.5833 -3.5375 1.9029 21 14 15.8879 -3.2954 0.3828 22 1 16.7049 -2.2046 0.9728 23 1 16.3320 -4.6004 0.9350 24 1 16.0576 -3.2985 -1.0924 25 6 10.9901 -1.3001 -0.5531 26 6 9.6378 -1.8898 -0.1456 27 1 9.4897 -2.8646 -0.6104 28 6 8.4205 -1.0108 -0.3563 29 7 2.2864 -1.0960 0.0005 30 6 1.8311 -2.4885 0.0016 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 4.3977 1.3722 0.0112 35 1 6.1039 0.0381 0.1102 36 1 6.5800 -2.7655 2.0178 37 1 7.4353 -1.2356 2.2938 38 1 8.7028 -3.8535 1.3483 39 1 8.8728 -3.1186 2.9669 40 1 11.2435 -3.6832 1.4407 41 1 11.7612 -2.2427 2.3649 42 1 14.1455 -4.0598 2.4961 43 1 11.1708 -1.4529 -1.6172 44 1 11.0380 -0.2403 -0.3028 45 1 8.5377 -0.0759 0.1917 46 1 8.2891 -0.8061 -1.4188 47 1 1.6542 -2.8120 1.0274 48 1 0.9060 -2.5687 -0.5693 49 1 2.5943 -3.1207 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980168861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:10 Heat of formation + Delta-G solvation = 42.535553 kcal Electronic energy + Delta-G solvation = -28636.975406 eV Core-core repulsion = 24793.229387 eV Total energy + Delta-G solvation = -3843.746019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.59042 -40.06423 -38.70451 -35.78923 -34.49464 -33.55960 -32.33404 -31.78197 -30.69075 -28.99529 -27.92839 -27.13301 -26.10271 -24.93815 -23.23050 -22.04148 -21.23305 -20.48221 -20.13047 -19.74739 -19.37371 -17.99955 -16.71985 -16.52586 -16.45816 -15.93911 -14.94739 -14.89154 -14.66276 -14.36951 -14.24264 -13.99105 -13.83329 -13.71657 -13.54545 -13.32340 -13.21619 -12.82019 -12.74381 -12.41158 -12.32265 -12.11575 -11.88532 -11.59818 -11.28797 -10.93596 -10.81968 -10.71756 -10.62594 -10.53264 -10.11916 -10.04068 -10.01068 -9.88008 -9.84500 -9.55425 -9.42937 -9.10330 -8.74878 -8.57411 -6.79286 -5.66700 -2.99582 1.00535 2.12673 2.47948 3.07414 3.13387 3.42441 3.47293 3.49309 3.95653 4.31890 4.41159 4.52119 4.58605 4.75366 4.77471 4.88891 4.91893 5.03419 5.09231 5.17926 5.21124 5.31160 5.38305 5.39654 5.52895 5.64041 5.66000 5.66559 5.78286 5.82079 6.03954 6.14162 6.14954 6.16053 6.24098 6.28585 6.37519 6.43236 6.54611 6.63454 6.67311 6.67689 6.85837 7.04502 7.28543 7.57740 7.59110 7.68684 7.86882 7.98254 8.26989 9.24408 9.85047 10.53046 11.45282 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.002082 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.940816 B =13446.608073 C =13733.410880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.224 3.776 3 N -0.494 5.494 4 C 0.039 3.961 5 C -0.087 4.087 6 C 0.595 3.405 7 O -0.546 6.546 8 N -0.711 5.711 9 C 0.150 3.850 10 H 0.087 0.913 11 C -0.122 4.122 12 C -0.096 4.096 13 C -0.117 4.117 14 H 0.063 0.937 15 C 0.188 3.812 16 N -0.610 5.610 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.143 3.857 26 C -0.105 4.105 27 H 0.076 0.924 28 C -0.107 4.107 29 N -0.423 5.423 30 C 0.062 3.938 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.179 0.821 35 H 0.401 0.599 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.251 0.749 43 H 0.039 0.961 44 H 0.020 0.980 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.515 6.007 -2.539 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.038 4.038 3 N -0.213 5.213 4 C -0.115 4.115 5 C -0.204 4.204 6 C 0.381 3.619 7 O -0.425 6.425 8 N -0.361 5.361 9 C 0.046 3.954 10 H 0.105 0.895 11 C -0.161 4.161 12 C -0.135 4.135 13 C -0.136 4.136 14 H 0.082 0.918 15 C 0.064 3.936 16 N -0.337 5.337 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.018 3.982 26 C -0.125 4.125 27 H 0.094 0.906 28 C -0.146 4.146 29 N -0.104 5.104 30 C -0.080 4.080 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.196 0.804 35 H 0.236 0.764 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.734 5.613 -2.510 27.432 hybrid contribution 1.347 -0.519 -0.088 1.446 sum -25.387 5.094 -2.598 26.023 Atomic orbital electron populations 1.20277 0.84357 1.04373 1.03936 1.23453 0.95961 0.81181 1.03169 1.70109 1.02151 1.28095 1.20958 1.22643 0.95229 0.91242 1.02413 1.20793 0.85396 0.94949 1.19250 1.16764 0.82196 0.86585 0.76314 1.90779 1.86686 1.14221 1.50815 1.45827 1.05547 1.10660 1.74060 1.21182 0.82608 0.94505 0.97078 0.89472 1.21882 0.98512 1.00517 0.95168 1.21202 0.92713 0.98284 1.01283 1.22159 0.97137 0.99391 0.94909 0.91848 1.20811 0.85488 0.96979 0.90326 1.45098 1.06170 1.60114 1.22276 1.19067 0.83811 1.27240 1.05181 0.90528 1.24792 0.98261 1.00413 0.97235 1.69964 1.34418 1.39421 1.13240 0.86130 0.84935 0.77230 0.77543 1.21697 1.21743 1.20768 1.21278 0.87845 0.94173 0.94938 1.21982 0.93665 0.99257 0.97584 0.90606 1.21603 0.93539 0.98825 1.00601 1.45085 1.05157 1.08374 1.51801 1.22347 1.02555 0.78913 1.04162 0.89681 0.88730 0.90541 0.80358 0.76416 0.92137 0.92069 0.91666 0.91605 0.94340 0.93193 0.93850 0.94310 0.96211 0.91501 0.91128 0.90128 0.89540 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.18 36.00 0.37 0.02 16 2 C 0.22 2.09 7.88 -155.62 -1.23 0.87 16 3 N -0.49 -5.57 11.20 -10.59 -0.12 -5.68 16 4 C 0.04 0.40 11.37 -17.48 -0.20 0.21 16 5 C -0.09 -0.97 6.91 -82.14 -0.57 -1.54 16 6 C 0.59 7.32 7.74 -12.82 -0.10 7.22 16 7 O -0.55 -8.24 14.38 5.21 0.07 -8.16 16 8 N -0.71 -7.49 5.01 -54.83 -0.27 -7.77 16 9 C 0.15 1.86 2.46 -67.67 -0.17 1.69 16 10 H 0.09 1.25 7.45 -51.93 -0.39 0.86 16 11 C -0.12 -1.59 5.39 -26.54 -0.14 -1.74 16 12 C -0.10 -1.48 5.71 -27.08 -0.15 -1.63 16 13 C -0.12 -2.09 2.31 -90.36 -0.21 -2.30 16 14 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 15 C 0.19 4.52 5.07 -3.42 -0.02 4.50 16 16 N -0.61 -15.59 3.45 -170.42 -0.59 -16.18 16 17 C -0.22 -6.31 10.30 -15.06 -0.16 -6.47 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -27.32 10.36 55.49 0.58 -26.74 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.14 2.90 6.90 -2.82 -0.02 2.88 16 26 C -0.10 -1.75 2.43 -89.90 -0.22 -1.97 16 27 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 28 C -0.11 -1.35 5.26 -26.92 -0.14 -1.49 16 29 N -0.42 -4.17 3.17 -117.27 -0.37 -4.54 16 30 C 0.06 0.45 10.58 59.85 0.63 1.08 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.22 7.11 -51.93 -0.37 -0.14 16 34 H 0.18 1.29 7.46 -52.49 -0.39 0.89 16 35 H 0.40 3.17 7.57 -40.82 -0.31 2.86 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 1.02 7.60 -51.92 -0.39 0.63 16 41 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 46 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.36 7.14 -51.92 -0.37 -0.01 16 49 H 0.11 1.01 6.20 -51.93 -0.32 0.69 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -34.67 383.75 -10.30 -44.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.94 Total: 0.11 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.41 Total: 0.92 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.78 Total: -60.92 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.67 -10.30 -44.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980168861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.500 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds