Wall clock time and date at job start Tue Mar 31 2020 19:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30860 * 125.41980 * 2 1 4 4 C 1.33320 * 109.68686 * 179.74421 * 3 2 1 5 5 C 1.36663 * 107.78587 * 0.38356 * 4 3 2 6 6 C 1.46759 * 126.84524 * 179.89718 * 5 4 3 7 7 O 1.21677 * 120.00253 * 185.01091 * 6 5 4 8 8 N 1.34780 * 120.00146 * 5.00539 * 6 5 4 9 9 C 1.46495 * 120.00136 * 174.70772 * 8 6 5 10 10 H 1.09004 * 109.01893 * 33.94343 * 9 8 6 11 11 C 1.52515 * 109.03702 * 274.99962 * 9 8 6 12 12 C 1.53839 * 111.66761 * 185.38654 * 11 9 8 13 13 C 1.51451 * 107.03920 * 57.19681 * 12 11 9 14 14 H 1.08994 * 110.21916 * 54.38354 * 13 12 11 15 15 C 1.52329 * 117.44550 * 181.23295 * 13 12 11 16 16 N 1.48245 * 105.86093 * 145.30499 * 15 13 12 17 17 C 1.36936 * 125.78246 * 176.79458 * 16 15 13 18 18 H 1.07995 * 120.00217 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00185 * 0.02889 * 17 16 15 20 20 N 1.31624 * 119.99803 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00206 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46860 * 90.00318 * 21 19 17 23 23 H 1.48498 * 109.47079 * 209.99889 * 21 19 17 24 24 H 1.48499 * 109.47392 * 330.00498 * 21 19 17 25 25 C 1.48657 * 108.43354 * 356.81882 * 16 15 13 26 26 C 1.53054 * 103.44368 * 335.62340 * 25 16 15 27 27 H 1.09001 * 110.55306 * 284.33047 * 26 25 16 28 28 C 1.51618 * 116.68165 * 156.96117 * 26 25 16 29 29 N 1.34495 * 125.42027 * 179.97438 * 2 1 3 30 30 C 1.46502 * 126.47302 * 359.97438 * 29 2 1 31 31 H 1.09004 * 109.47109 * 270.01935 * 1 2 3 32 32 H 1.09002 * 109.47298 * 30.02043 * 1 2 3 33 33 H 1.09002 * 109.47628 * 150.02133 * 1 2 3 34 34 H 1.07993 * 126.10410 * 180.27625 * 4 3 2 35 35 H 0.97004 * 119.99567 * 354.70909 * 8 6 5 36 36 H 1.09005 * 109.04125 * 64.82628 * 11 9 8 37 37 H 1.08996 * 109.04523 * 305.95116 * 11 9 8 38 38 H 1.08998 * 109.94073 * 297.81819 * 12 11 9 39 39 H 1.09003 * 109.94486 * 176.57954 * 12 11 9 40 40 H 1.09008 * 110.17407 * 26.21307 * 15 13 12 41 41 H 1.08996 * 110.17382 * 264.40427 * 15 13 12 42 42 H 0.97000 * 120.00116 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.62627 * 217.12857 * 25 16 15 44 44 H 1.09002 * 110.62284 * 94.11074 * 25 16 15 45 45 H 1.09001 * 109.94279 * 301.97262 * 28 26 25 46 46 H 1.09008 * 109.94265 * 63.21389 * 28 26 25 47 47 H 1.09007 * 109.46793 * 273.77833 * 30 29 2 48 48 H 1.09007 * 109.47025 * 33.77298 * 30 29 2 49 49 H 1.08998 * 109.47284 * 153.77942 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7049 0.0056 5 6 3.5976 -0.6608 0.0006 6 6 4.8028 -1.4982 0.0018 7 8 4.7039 -2.7071 -0.0951 8 7 6.0193 -0.9283 0.1103 9 6 7.2138 -1.7681 0.2283 10 1 7.0682 -2.6769 -0.3557 11 6 7.4147 -2.1445 1.6926 12 6 8.7279 -2.9170 1.9055 13 6 9.8483 -2.0386 1.3889 14 1 9.8094 -1.0592 1.8655 15 6 11.2651 -2.5935 1.4600 16 7 11.9641 -2.0748 0.2600 17 6 13.2835 -2.2748 -0.0471 18 1 13.6980 -1.8515 -0.9501 19 6 14.0883 -3.0219 0.8021 20 7 13.5833 -3.5375 1.9029 21 14 15.8879 -3.2954 0.3828 22 1 16.7049 -2.2046 0.9728 23 1 16.3320 -4.6004 0.9350 24 1 16.0576 -3.2985 -1.0924 25 6 10.9901 -1.3001 -0.5531 26 6 9.6378 -1.8898 -0.1456 27 1 9.4897 -2.8646 -0.6104 28 6 8.4205 -1.0108 -0.3563 29 7 2.2864 -1.0960 0.0005 30 6 1.8311 -2.4885 0.0016 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 4.3977 1.3722 0.0112 35 1 6.1039 0.0381 0.1102 36 1 6.5800 -2.7655 2.0178 37 1 7.4353 -1.2356 2.2938 38 1 8.7028 -3.8535 1.3483 39 1 8.8728 -3.1186 2.9669 40 1 11.2435 -3.6832 1.4407 41 1 11.7612 -2.2427 2.3649 42 1 14.1455 -4.0598 2.4961 43 1 11.1708 -1.4529 -1.6172 44 1 11.0380 -0.2403 -0.3028 45 1 8.5377 -0.0759 0.1917 46 1 8.2891 -0.8061 -1.4188 47 1 1.6542 -2.8120 1.0274 48 1 0.9060 -2.5687 -0.5693 49 1 2.5943 -3.1207 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980168861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:09 Heat of formation + Delta-G solvation = 20.373971 kcal Electronic energy + Delta-G solvation = -28637.936404 eV Core-core repulsion = 24793.229387 eV Total energy + Delta-G solvation = -3844.707017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.29273 -41.21179 -39.95034 -37.14486 -35.39947 -34.79093 -33.61815 -32.87752 -31.98938 -30.50798 -28.79747 -27.91733 -27.48176 -26.61148 -24.12440 -23.55478 -22.20482 -21.67064 -21.25230 -20.96785 -20.61305 -18.87665 -18.69322 -17.32323 -17.19912 -16.86638 -16.78619 -15.90878 -15.86648 -15.66435 -15.57203 -15.19752 -14.86201 -14.79084 -14.21635 -14.18431 -14.09217 -13.74489 -13.67369 -13.55499 -13.36667 -13.29862 -13.18031 -13.09984 -12.91016 -12.74405 -12.58902 -12.10996 -11.94894 -11.77062 -11.73787 -11.53723 -11.38044 -11.16227 -10.93429 -10.84350 -10.74653 -10.68623 -10.14495 -9.47817 -8.87720 -7.82779 -5.17679 0.24565 1.43444 1.45259 1.47426 1.55916 1.74950 2.25046 2.29236 2.50426 3.35117 3.40503 3.54103 3.60558 3.66835 3.72004 3.88005 3.93081 3.96797 4.12665 4.28951 4.35553 4.39483 4.44387 4.47975 4.54210 4.56339 4.67814 4.71404 4.73415 4.74854 4.80903 4.95402 5.05142 5.05789 5.08029 5.12106 5.16166 5.20641 5.26799 5.35933 5.44621 5.48571 5.50974 5.57294 5.76609 5.82887 6.05518 6.19598 6.45509 6.87503 7.10338 7.12658 7.77618 8.44952 9.27848 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.002082 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.940816 B =13446.608073 C =13733.410880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.228 3.772 3 N -0.527 5.527 4 C 0.044 3.956 5 C -0.114 4.114 6 C 0.596 3.404 7 O -0.581 6.581 8 N -0.697 5.697 9 C 0.159 3.841 10 H 0.067 0.933 11 C -0.111 4.111 12 C -0.091 4.091 13 C -0.105 4.105 14 H 0.076 0.924 15 C 0.197 3.803 16 N -0.635 5.635 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.072 4.072 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.138 3.862 26 C -0.089 4.089 27 H 0.061 0.939 28 C -0.094 4.094 29 N -0.431 5.431 30 C 0.060 3.940 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.203 0.797 35 H 0.417 0.583 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.066 0.934 40 H -0.001 1.001 41 H 0.011 0.989 42 H 0.245 0.755 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.119 0.881 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.680 7.838 -3.423 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 N -0.247 5.247 4 C -0.111 4.111 5 C -0.230 4.230 6 C 0.384 3.616 7 O -0.462 6.462 8 N -0.348 5.348 9 C 0.054 3.946 10 H 0.086 0.914 11 C -0.149 4.149 12 C -0.130 4.130 13 C -0.124 4.124 14 H 0.094 0.906 15 C 0.072 3.928 16 N -0.362 5.362 17 C -0.367 4.367 18 H 0.100 0.900 19 C -0.265 4.265 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.194 1.194 25 C 0.014 3.986 26 C -0.109 4.109 27 H 0.079 0.921 28 C -0.132 4.132 29 N -0.111 5.111 30 C -0.081 4.081 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.220 0.780 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.029 0.971 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.137 0.863 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -28.922 7.488 -3.423 30.071 hybrid contribution 1.975 -1.070 0.167 2.253 sum -26.946 6.417 -3.256 27.891 Atomic orbital electron populations 1.20498 0.81442 1.05770 1.05240 1.24270 0.97532 0.80612 1.01032 1.70155 1.02770 1.29193 1.22552 1.23102 0.95835 0.91245 1.00884 1.20724 0.85637 0.95188 1.21486 1.16948 0.82859 0.86227 0.75615 1.90768 1.87179 1.15734 1.52513 1.45577 1.04459 1.11276 1.73472 1.20910 0.83307 0.94150 0.96210 0.91435 1.21757 0.96500 1.00719 0.95972 1.21139 0.93115 0.97710 1.01028 1.21974 0.94053 0.99872 0.96499 0.90555 1.20538 0.88851 0.94742 0.88638 1.45473 1.06473 1.60700 1.23545 1.19489 0.85361 1.26671 1.05174 0.89964 1.25669 1.02574 1.00828 0.97423 1.70201 1.35554 1.40268 1.14223 0.85076 0.79805 0.76612 0.77850 1.21258 1.22282 1.19351 1.21495 0.88352 0.94325 0.94450 1.21830 0.93883 0.99348 0.95853 0.92074 1.21502 0.90917 0.98497 1.02281 1.45317 1.04885 1.09328 1.51601 1.22465 1.03091 0.77462 1.05068 0.88277 0.88220 0.88255 0.77986 0.74533 0.92438 0.90358 0.92895 0.91535 0.98246 0.97088 0.94584 0.93933 0.94707 0.89338 0.89200 0.89314 0.86295 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.18 71.23 0.73 0.24 16 2 C 0.23 3.75 7.88 138.19 1.09 4.84 16 3 N -0.53 -10.84 11.20 -187.40 -2.10 -12.94 16 4 C 0.04 0.81 11.37 84.10 0.96 1.77 16 5 C -0.11 -2.36 6.91 40.01 0.28 -2.09 16 6 C 0.60 13.87 7.74 86.47 0.67 14.53 16 7 O -0.58 -17.33 14.38 -4.28 -0.06 -17.39 16 8 N -0.70 -13.00 5.01 -445.61 -2.23 -15.23 16 9 C 0.16 3.61 2.46 45.17 0.11 3.72 16 10 H 0.07 1.87 7.45 -2.38 -0.02 1.85 16 11 C -0.11 -2.70 5.39 30.72 0.17 -2.53 16 12 C -0.09 -2.79 5.71 30.37 0.17 -2.61 16 13 C -0.10 -3.74 2.31 -10.62 -0.02 -3.77 16 14 H 0.08 2.56 7.98 -2.39 -0.02 2.54 16 15 C 0.20 9.88 5.07 85.82 0.43 10.31 16 16 N -0.64 -33.14 3.45 -693.07 -2.39 -35.53 16 17 C -0.24 -13.60 10.30 84.03 0.87 -12.73 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 20 N -0.95 -58.86 10.36 21.65 0.22 -58.64 16 21 Si 0.98 46.78 29.55 68.60 2.03 48.80 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.14 5.46 6.90 85.98 0.59 6.05 16 26 C -0.09 -2.88 2.43 -10.33 -0.03 -2.91 16 27 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 28 C -0.09 -2.07 5.26 30.47 0.16 -1.91 16 29 N -0.43 -7.75 3.17 -524.93 -1.67 -9.41 16 30 C 0.06 0.77 10.58 127.77 1.35 2.12 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.22 7.11 -2.39 -0.02 0.20 16 34 H 0.20 2.34 7.46 -2.91 -0.02 2.32 16 35 H 0.42 5.16 7.57 -92.71 -0.70 4.46 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.00 -0.04 7.60 -2.38 -0.02 -0.06 16 41 H 0.01 0.62 7.30 -2.39 -0.02 0.60 16 42 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 46 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.12 0.66 7.14 -2.38 -0.02 0.65 16 49 H 0.09 1.58 6.20 -2.39 -0.01 1.56 16 Total: -1.00 -79.03 383.75 2.04 -77.00 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.25 Total: 12.07 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 7.99 Total: 11.28 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -8.17 Total: -131.76 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.03 2.04 -77.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980168861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.371 kcal (2) G-P(sol) polarization free energy of solvation -79.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds