Wall clock time and date at job start Tue Mar 31 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47295 * 2 1 4 4 C 1.38541 * 120.01776 * 124.99951 * 3 2 1 5 5 C 1.40076 * 117.82036 * 179.97438 * 4 3 2 6 6 C 1.48136 * 121.14863 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99983 * 173.91370 * 6 5 4 8 8 N 1.34779 * 119.99575 * 353.91125 * 6 5 4 9 9 C 1.46498 * 119.99726 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47390 * 35.00109 * 9 8 6 11 11 C 1.53002 * 109.47217 * 274.99952 * 9 8 6 12 12 C 1.53004 * 109.47458 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46735 * 59.99992 * 12 11 9 14 14 C 1.52996 * 109.47148 * 299.99881 * 13 12 11 15 15 H 1.08997 * 109.47327 * 299.99985 * 14 13 12 16 16 N 1.46505 * 109.47082 * 180.02562 * 14 13 12 17 17 C 1.36936 * 119.99832 * 84.99777 * 16 14 13 18 18 H 1.08001 * 120.00119 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00264 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99513 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00146 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.46947 * 120.00250 * 21 19 17 24 24 H 1.48505 * 109.46960 * 240.00345 * 21 19 17 25 25 C 1.52998 * 109.47271 * 155.00027 * 9 8 6 26 26 C 1.39766 * 117.70483 * 359.97438 * 5 4 3 27 27 C 1.50699 * 120.17155 * 179.97438 * 26 5 4 28 28 N 1.31897 * 119.65745 * 0.02562 * 26 5 4 29 29 N 1.28278 * 122.32766 * 359.72410 * 28 26 5 30 30 H 1.08994 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46694 * 300.00097 * 1 2 3 32 32 H 1.09001 * 109.46921 * 59.99473 * 1 2 3 33 33 H 1.08992 * 109.47159 * 119.99767 * 2 1 3 34 34 H 1.09003 * 109.47171 * 240.00121 * 2 1 3 35 35 H 1.08002 * 121.08684 * 0.02562 * 4 3 2 36 36 H 0.96996 * 120.00424 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.47355 * 300.00471 * 11 9 8 38 38 H 1.09007 * 109.46885 * 59.99820 * 11 9 8 39 39 H 1.08996 * 109.46806 * 180.02562 * 12 11 9 40 40 H 1.09000 * 109.46968 * 299.99908 * 12 11 9 41 41 H 1.08997 * 109.46995 * 60.00070 * 13 12 11 42 42 H 1.09002 * 109.46660 * 180.02562 * 13 12 11 43 43 H 0.97001 * 120.00056 * 265.00385 * 16 14 13 44 44 H 0.97003 * 119.99416 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.47370 * 300.00300 * 25 9 8 46 46 H 1.09009 * 109.47074 * 60.00101 * 25 9 8 47 47 H 1.08998 * 109.46831 * 83.65646 * 27 26 5 48 48 H 1.09001 * 109.47198 * 203.65678 * 27 26 5 49 49 H 1.09000 * 109.47003 * 323.65620 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9121 1.8449 0.9826 5 6 3.3501 3.1747 0.9383 6 6 4.2904 3.7059 1.9523 7 8 4.7431 4.8272 1.8327 8 7 4.6436 2.9455 3.0076 9 6 5.5730 3.4711 4.0107 10 1 5.4030 4.5401 4.1388 11 6 7.0116 3.2355 3.5461 12 6 7.9823 3.7850 4.5934 13 6 7.7531 3.0693 5.9261 14 6 6.3146 3.3049 6.3908 15 1 6.1445 4.3740 6.5185 16 7 6.0954 2.6202 7.6673 17 6 6.4366 3.2358 8.8419 18 1 6.8669 4.2263 8.8273 19 6 6.2284 2.5873 10.0514 20 7 5.7035 1.3804 10.0692 21 14 6.6932 3.4274 11.6538 22 1 7.2593 4.7691 11.3632 23 1 5.4848 3.5742 12.5043 24 1 7.7044 2.6070 12.3677 25 6 5.3437 2.7550 5.3432 26 6 2.8695 3.9830 -0.0956 27 6 3.3040 5.4225 -0.1960 28 7 2.0328 3.4797 -0.9824 29 7 1.6392 2.2596 -0.9388 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.2498 1.1720 1.7570 36 1 4.2824 2.0504 3.1029 37 1 7.1816 2.1665 3.4179 38 1 7.1749 3.7457 2.5967 39 1 9.0071 3.6175 4.2621 40 1 7.8121 4.8540 4.7210 41 1 7.9232 2.0003 5.7984 42 1 8.4444 3.4611 6.6724 43 1 5.7086 1.7307 7.6803 44 1 5.5584 0.9271 10.9144 45 1 4.3189 2.9227 5.6742 46 1 5.5138 1.6859 5.2151 47 1 4.2622 5.4776 -0.7126 48 1 2.5578 5.9893 -0.7530 49 1 3.4061 5.8419 0.8049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981238637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:54 Heat of formation + Delta-G solvation = 8.966280 kcal Electronic energy + Delta-G solvation = -28307.077860 eV Core-core repulsion = 24461.876168 eV Total energy + Delta-G solvation = -3845.201692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 11.33 seconds Orbital eigenvalues (eV) -41.74219 -40.00106 -38.12157 -35.69396 -34.86687 -34.03635 -33.37503 -31.88239 -31.19854 -29.56111 -28.14281 -27.79956 -26.15234 -23.89805 -23.78323 -23.13892 -22.03075 -21.43259 -20.56297 -19.56432 -18.07579 -17.89199 -17.02881 -16.22063 -16.07005 -15.92857 -15.45022 -15.07045 -14.74931 -14.47903 -14.34457 -14.12340 -13.88868 -13.65761 -13.58174 -13.26884 -13.21353 -12.80498 -12.67369 -12.46204 -12.23205 -12.18963 -12.15492 -11.63110 -11.17978 -11.08502 -11.05077 -10.94175 -10.82290 -10.63977 -10.60568 -10.45033 -10.31965 -10.21352 -9.97830 -9.85184 -9.72743 -9.61887 -9.17225 -8.93584 -7.02490 -5.82645 -3.11465 -0.04175 0.46688 2.46147 2.72696 3.21912 3.39521 3.45846 3.47554 3.52218 3.82669 3.98335 4.19456 4.33385 4.52443 4.61457 4.69652 4.83135 4.86342 4.96325 5.06959 5.12954 5.20674 5.27284 5.41240 5.46028 5.46686 5.49898 5.56915 5.58873 5.61730 5.63393 5.76012 5.77211 5.86567 5.90098 5.91607 6.02550 6.04895 6.18474 6.21717 6.37670 6.43634 6.50786 6.63662 6.88445 7.04277 7.18409 7.66189 7.84568 8.31862 8.35995 9.47472 10.03789 10.38392 11.40079 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002414 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.003948 B =11594.509325 C =12659.328047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.080 4.080 5 C -0.129 4.129 6 C 0.561 3.439 7 O -0.517 6.517 8 N -0.712 5.712 9 C 0.149 3.851 10 H 0.092 0.908 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.137 4.137 14 C 0.184 3.816 15 H 0.049 0.951 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.130 4.130 26 C 0.118 3.882 27 C -0.105 4.105 28 N -0.242 5.242 29 N -0.220 5.220 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.398 0.602 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -1.251 -21.718 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.110 4.110 5 C -0.143 4.143 6 C 0.346 3.654 7 O -0.393 6.393 8 N -0.362 5.362 9 C 0.045 3.955 10 H 0.110 0.890 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.178 4.178 14 C 0.074 3.926 15 H 0.067 0.933 16 N -0.365 5.365 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.169 4.169 26 C -0.027 4.027 27 C -0.163 4.163 28 N -0.084 5.084 29 N -0.063 5.063 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.172 0.828 36 H 0.233 0.767 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.025 -0.052 -22.981 23.758 hybrid contribution 0.872 -0.801 2.315 2.600 sum -5.153 -0.854 -20.666 21.316 Atomic orbital electron populations 1.21718 0.93514 1.02368 1.02931 1.20481 0.97510 0.88764 1.03984 1.22871 0.94645 0.98836 0.92171 1.22585 0.94640 0.95178 0.98564 1.21176 1.00055 0.94972 0.98114 1.17854 0.80882 0.85379 0.81292 1.90760 1.54317 1.18425 1.75828 1.46100 1.47383 1.18546 1.24212 1.21147 0.87916 0.99820 0.86637 0.88983 1.21890 0.94120 1.01272 0.98987 1.21484 0.98008 1.00276 0.95544 1.22302 1.00485 0.99926 0.95077 1.20097 0.90886 0.96125 0.85535 0.93279 1.42403 1.75228 1.18936 0.99896 1.19282 1.33991 0.99294 0.84286 0.91070 1.24741 1.01817 0.96712 0.97703 1.69668 1.50046 1.13215 1.25242 0.86134 0.77632 0.78522 0.84025 1.20516 1.21875 1.21868 1.22123 1.01394 1.00135 0.93269 1.23161 0.91370 0.98823 0.89315 1.20977 1.01832 0.87852 1.05661 1.73097 1.09050 1.05336 1.20941 1.72758 1.16960 0.97510 1.19078 0.91698 0.92654 0.91386 0.89631 0.89249 0.82799 0.76675 0.91983 0.92070 0.92389 0.92070 0.92634 0.91782 0.78344 0.93567 0.91203 0.91620 0.89391 0.90597 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.78 37.16 0.36 -0.55 16 2 C -0.07 -0.41 6.35 -27.88 -0.18 -0.59 16 3 C 0.06 0.53 6.25 -82.45 -0.52 0.01 16 4 C -0.08 -0.66 9.29 -38.78 -0.36 -1.02 16 5 C -0.13 -1.35 5.92 -104.57 -0.62 -1.97 16 6 C 0.56 6.48 7.70 -12.20 -0.09 6.39 16 7 O -0.52 -7.23 13.20 5.36 0.07 -7.16 16 8 N -0.71 -7.32 5.04 -54.66 -0.28 -7.60 16 9 C 0.15 1.84 2.45 -67.93 -0.17 1.68 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.12 -1.50 5.49 -26.73 -0.15 -1.65 16 12 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 13 C -0.14 -2.27 5.50 -26.73 -0.15 -2.42 16 14 C 0.18 3.36 2.77 -67.90 -0.19 3.17 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -17.13 5.12 -53.40 -0.27 -17.41 16 17 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.13 -1.87 4.86 -26.70 -0.13 -2.00 16 26 C 0.12 1.35 6.91 -81.99 -0.57 0.78 16 27 C -0.11 -1.06 8.97 36.01 0.32 -0.74 16 28 N -0.24 -3.03 11.42 33.81 0.39 -2.64 16 29 N -0.22 -2.56 11.05 33.58 0.37 -2.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.50 7.97 -51.93 -0.41 0.08 16 33 H 0.09 0.34 7.92 -51.93 -0.41 -0.07 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.15 0.76 6.60 -52.49 -0.35 0.42 16 36 H 0.40 3.09 6.83 -40.82 -0.28 2.82 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.38 9.60 7.80 -40.82 -0.32 9.29 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.11 1.17 5.94 -51.93 -0.31 0.86 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -31.76 394.04 -8.84 -40.60 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.93 Total: 7.77 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.83 Total: -7.56 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.93 Total: -56.51 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.07 Total: -7.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.76 -8.84 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981238637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.564 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.34 seconds