Wall clock time and date at job start Tue Mar 31 2020 21:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47295 * 2 1 4 4 C 1.38541 * 120.01776 * 124.99951 * 3 2 1 5 5 C 1.40076 * 117.82036 * 179.97438 * 4 3 2 6 6 C 1.48136 * 121.14863 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99983 * 173.91370 * 6 5 4 8 8 N 1.34779 * 119.99575 * 353.91125 * 6 5 4 9 9 C 1.46498 * 119.99726 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47390 * 35.00109 * 9 8 6 11 11 C 1.53002 * 109.47217 * 274.99952 * 9 8 6 12 12 C 1.53004 * 109.47458 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46735 * 59.99992 * 12 11 9 14 14 C 1.52996 * 109.47148 * 299.99881 * 13 12 11 15 15 H 1.08997 * 109.47327 * 299.99985 * 14 13 12 16 16 N 1.46505 * 109.47082 * 180.02562 * 14 13 12 17 17 C 1.36936 * 119.99832 * 84.99777 * 16 14 13 18 18 H 1.08001 * 120.00119 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00264 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99513 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00146 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47144 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.46947 * 120.00250 * 21 19 17 24 24 H 1.48505 * 109.46960 * 240.00345 * 21 19 17 25 25 C 1.52998 * 109.47271 * 155.00027 * 9 8 6 26 26 C 1.39766 * 117.70483 * 359.97438 * 5 4 3 27 27 C 1.50699 * 120.17155 * 179.97438 * 26 5 4 28 28 N 1.31897 * 119.65745 * 0.02562 * 26 5 4 29 29 N 1.28278 * 122.32766 * 359.72410 * 28 26 5 30 30 H 1.08994 * 109.47036 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46694 * 300.00097 * 1 2 3 32 32 H 1.09001 * 109.46921 * 59.99473 * 1 2 3 33 33 H 1.08992 * 109.47159 * 119.99767 * 2 1 3 34 34 H 1.09003 * 109.47171 * 240.00121 * 2 1 3 35 35 H 1.08002 * 121.08684 * 0.02562 * 4 3 2 36 36 H 0.96996 * 120.00424 * 0.02562 * 8 6 5 37 37 H 1.09005 * 109.47355 * 300.00471 * 11 9 8 38 38 H 1.09007 * 109.46885 * 59.99820 * 11 9 8 39 39 H 1.08996 * 109.46806 * 180.02562 * 12 11 9 40 40 H 1.09000 * 109.46968 * 299.99908 * 12 11 9 41 41 H 1.08997 * 109.46995 * 60.00070 * 13 12 11 42 42 H 1.09002 * 109.46660 * 180.02562 * 13 12 11 43 43 H 0.97001 * 120.00056 * 265.00385 * 16 14 13 44 44 H 0.97003 * 119.99416 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.47370 * 300.00300 * 25 9 8 46 46 H 1.09009 * 109.47074 * 60.00101 * 25 9 8 47 47 H 1.08998 * 109.46831 * 83.65646 * 27 26 5 48 48 H 1.09001 * 109.47198 * 203.65678 * 27 26 5 49 49 H 1.09000 * 109.47003 * 323.65620 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9121 1.8449 0.9826 5 6 3.3501 3.1747 0.9383 6 6 4.2904 3.7059 1.9523 7 8 4.7431 4.8272 1.8327 8 7 4.6436 2.9455 3.0076 9 6 5.5730 3.4711 4.0107 10 1 5.4030 4.5401 4.1388 11 6 7.0116 3.2355 3.5461 12 6 7.9823 3.7850 4.5934 13 6 7.7531 3.0693 5.9261 14 6 6.3146 3.3049 6.3908 15 1 6.1445 4.3740 6.5185 16 7 6.0954 2.6202 7.6673 17 6 6.4366 3.2358 8.8419 18 1 6.8669 4.2263 8.8273 19 6 6.2284 2.5873 10.0514 20 7 5.7035 1.3804 10.0692 21 14 6.6932 3.4274 11.6538 22 1 7.2593 4.7691 11.3632 23 1 5.4848 3.5742 12.5043 24 1 7.7044 2.6070 12.3677 25 6 5.3437 2.7550 5.3432 26 6 2.8695 3.9830 -0.0956 27 6 3.3040 5.4225 -0.1960 28 7 2.0328 3.4797 -0.9824 29 7 1.6392 2.2596 -0.9388 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 3.2498 1.1720 1.7570 36 1 4.2824 2.0504 3.1029 37 1 7.1816 2.1665 3.4179 38 1 7.1749 3.7457 2.5967 39 1 9.0071 3.6175 4.2621 40 1 7.8121 4.8540 4.7210 41 1 7.9232 2.0003 5.7984 42 1 8.4444 3.4611 6.6724 43 1 5.7086 1.7307 7.6803 44 1 5.5584 0.9271 10.9144 45 1 4.3189 2.9227 5.6742 46 1 5.5138 1.6859 5.2151 47 1 4.2622 5.4776 -0.7126 48 1 2.5578 5.9893 -0.7530 49 1 3.4061 5.8419 0.8049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981238637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:13 Heat of formation + Delta-G solvation = -11.295096 kcal Electronic energy + Delta-G solvation = -28307.956459 eV Core-core repulsion = 24461.876168 eV Total energy + Delta-G solvation = -3846.080291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 24.09 seconds Orbital eigenvalues (eV) -42.53326 -40.96559 -39.31586 -36.53942 -36.06418 -35.13218 -34.51423 -32.94984 -32.53338 -30.69816 -29.46558 -28.77915 -26.94892 -25.70023 -24.47533 -24.03801 -23.15549 -22.49981 -21.55433 -20.84383 -19.31343 -18.79279 -18.52836 -17.28369 -16.87495 -16.79581 -16.43766 -16.15915 -15.96591 -15.60813 -15.36663 -15.10962 -15.04423 -14.91135 -14.80511 -14.36638 -14.22913 -13.92846 -13.60478 -13.43841 -13.29903 -13.12176 -12.90684 -12.84204 -12.73583 -12.26157 -12.17672 -12.11098 -12.01711 -11.97110 -11.85032 -11.66061 -11.55287 -11.40738 -11.36000 -11.23955 -10.87733 -10.62142 -10.52732 -10.12654 -8.98558 -7.93729 -5.20797 -0.81635 -0.26431 1.47457 1.48423 1.57537 1.59555 1.81656 2.42649 2.56794 2.81864 3.10286 3.26094 3.40141 3.49157 3.59146 3.69598 3.86591 3.97865 4.04917 4.09865 4.26181 4.31972 4.37234 4.40031 4.44011 4.53635 4.55930 4.58809 4.64517 4.67523 4.67744 4.78038 4.91490 4.98244 5.05653 5.06752 5.10393 5.17522 5.18791 5.23741 5.27241 5.36662 5.41353 5.42223 5.52129 5.55100 5.67114 6.29431 6.34820 6.99007 7.36274 7.54089 8.12317 8.35380 9.29735 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.002414 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.003948 B =11594.509325 C =12659.328047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.064 4.064 5 C -0.139 4.139 6 C 0.565 3.435 7 O -0.544 6.544 8 N -0.700 5.700 9 C 0.160 3.840 10 H 0.076 0.924 11 C -0.117 4.117 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.177 3.823 15 H 0.036 0.964 16 N -0.736 5.736 17 C -0.234 4.234 18 H 0.072 0.928 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.294 1.294 25 C -0.116 4.116 26 C 0.105 3.895 27 C -0.100 4.100 28 N -0.269 5.269 29 N -0.246 5.246 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.193 0.807 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -2.294 -22.462 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.086 4.086 4 C -0.093 4.093 5 C -0.154 4.154 6 C 0.351 3.649 7 O -0.422 6.422 8 N -0.351 5.351 9 C 0.055 3.945 10 H 0.094 0.906 11 C -0.155 4.155 12 C -0.145 4.145 13 C -0.168 4.168 14 C 0.068 3.932 15 H 0.054 0.946 16 N -0.375 5.375 17 C -0.366 4.366 18 H 0.090 0.910 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.193 1.193 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.155 4.155 26 C -0.040 4.040 27 C -0.158 4.158 28 N -0.111 5.111 29 N -0.088 5.088 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.210 0.790 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.661 -1.077 -23.778 24.467 hybrid contribution 0.739 -0.487 2.488 2.641 sum -4.922 -1.564 -21.290 21.907 Atomic orbital electron populations 1.21710 0.93869 1.03151 1.01757 1.20654 0.97117 0.86993 1.05862 1.23401 0.94108 0.99743 0.91363 1.22999 0.93091 0.94559 0.98652 1.21086 1.00460 0.95994 0.97816 1.17948 0.80622 0.84963 0.81403 1.90756 1.55347 1.19670 1.76473 1.45849 1.46855 1.19119 1.23290 1.20846 0.88794 0.98688 0.86139 0.90576 1.21824 0.93114 1.02132 0.98444 1.21409 0.99472 0.99735 0.93909 1.22108 0.98264 1.00130 0.96278 1.20318 0.93071 0.95129 0.84660 0.94553 1.42578 1.75166 1.18742 1.01036 1.19597 1.32284 0.99138 0.85550 0.91024 1.25456 1.02996 0.97550 1.00666 1.69797 1.51996 1.14575 1.25467 0.85186 0.76937 0.77988 0.80373 1.19317 1.22222 1.22166 1.21902 0.99739 1.00871 0.92989 1.23319 0.91569 0.99374 0.89741 1.20912 1.02146 0.87651 1.05082 1.73049 1.10001 1.06141 1.21890 1.72680 1.17854 0.97664 1.20578 0.89930 0.93300 0.93122 0.86715 0.88322 0.79021 0.74875 0.90531 0.91700 0.90684 0.92265 0.92700 0.94188 0.79368 0.94117 0.91864 0.90250 0.89189 0.89917 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.78 71.98 0.70 -0.83 16 2 C -0.07 -0.60 6.35 29.85 0.19 -0.41 16 3 C 0.06 0.93 6.25 42.62 0.27 1.20 16 4 C -0.06 -0.86 9.29 22.79 0.21 -0.64 16 5 C -0.14 -2.68 5.92 -19.83 -0.12 -2.80 16 6 C 0.56 12.03 7.70 86.87 0.67 12.70 16 7 O -0.54 -14.74 13.20 -3.75 -0.05 -14.79 16 8 N -0.70 -12.47 5.04 -445.14 -2.24 -14.72 16 9 C 0.16 3.63 2.45 44.99 0.11 3.74 16 10 H 0.08 2.04 7.58 -2.39 -0.02 2.02 16 11 C -0.12 -2.50 5.49 30.60 0.17 -2.33 16 12 C -0.11 -2.60 5.92 30.60 0.18 -2.42 16 13 C -0.13 -4.08 5.50 30.59 0.17 -3.91 16 14 C 0.18 6.34 2.77 45.01 0.12 6.47 16 15 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 16 N -0.74 -34.79 5.12 -322.85 -1.65 -36.44 16 17 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 21 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 C -0.12 -3.14 4.86 30.61 0.15 -2.99 16 26 C 0.11 2.37 6.91 42.92 0.30 2.66 16 27 C -0.10 -2.03 8.97 71.24 0.64 -1.40 16 28 N -0.27 -6.71 11.42 -46.94 -0.54 -7.24 16 29 N -0.25 -5.55 11.05 -47.68 -0.53 -6.07 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.05 0.70 7.97 -2.39 -0.02 0.68 16 33 H 0.11 0.38 7.92 -2.39 -0.02 0.36 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.19 0.97 6.60 -2.91 -0.02 0.95 16 36 H 0.41 4.83 6.83 -92.71 -0.63 4.20 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.37 18.81 7.80 -92.71 -0.72 18.09 16 44 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.09 2.13 5.94 -2.39 -0.01 2.12 16 Total: -1.00 -69.84 394.04 1.97 -67.87 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.39 Total: 27.43 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.06 Total: -6.34 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -4.68 Total: -121.51 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.05 Total: -14.79 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.84 1.97 -67.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981238637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.572 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.09 seconds