Wall clock time and date at job start Tue Mar 31 2020 19:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30499 * 125.65133 * 2 1 4 4 C 1.34129 * 109.25741 * 180.29196 * 3 2 1 5 5 C 1.34675 * 108.01702 * 359.72685 * 4 3 2 6 6 N 1.35044 * 125.65156 * 179.82670 * 2 1 3 7 7 C 1.46507 * 126.39394 * 359.97310 * 6 2 1 8 8 C 1.50703 * 109.47126 * 84.71739 * 7 6 2 9 9 O 1.21282 * 119.99674 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00091 * 179.97438 * 8 7 6 11 11 C 1.47172 * 125.64786 * 359.97438 * 10 8 7 12 12 C 1.55352 * 106.96345 * 180.98079 * 11 10 8 13 13 H 1.09000 * 112.90880 * 214.96582 * 12 11 10 14 14 C 1.53001 * 106.41415 * 91.60634 * 12 11 10 15 15 C 1.52591 * 111.05028 * 197.20364 * 14 12 11 16 16 C 1.53331 * 108.40716 * 62.35545 * 15 14 12 17 17 C 1.51736 * 108.31284 * 296.21981 * 16 15 14 18 18 H 1.09006 * 108.77448 * 179.07959 * 17 16 15 19 19 N 1.46496 * 108.65028 * 297.55293 * 17 16 15 20 20 C 1.36937 * 119.99939 * 277.75352 * 19 17 16 21 21 H 1.08006 * 120.00205 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00299 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00624 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99753 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47179 * 89.99787 * 24 22 20 26 26 H 1.48499 * 109.46905 * 209.99639 * 24 22 20 27 27 H 1.48497 * 109.47074 * 329.99492 * 24 22 20 28 28 C 1.50731 * 112.35700 * 58.27374 * 17 16 15 29 29 H 1.09002 * 109.26814 * 187.02376 * 28 17 16 30 30 C 1.47816 * 125.65122 * 179.97438 * 10 8 7 31 31 H 1.09008 * 109.47248 * 270.17642 * 1 2 3 32 32 H 1.09001 * 109.47400 * 30.17537 * 1 2 3 33 33 H 1.09006 * 109.47457 * 150.17582 * 1 2 3 34 34 H 1.07995 * 125.99240 * 179.72261 * 4 3 2 35 35 H 1.07998 * 126.58798 * 180.02562 * 5 4 3 36 36 H 1.08994 * 109.47327 * 324.71627 * 7 6 2 37 37 H 1.08996 * 109.47081 * 204.71435 * 7 6 2 38 38 H 1.09001 * 109.96613 * 61.60961 * 11 10 8 39 39 H 1.09005 * 109.99650 * 300.37621 * 11 10 8 40 40 H 1.09002 * 109.16731 * 317.60710 * 14 12 11 41 41 H 1.08999 * 109.16684 * 76.85694 * 14 12 11 42 42 H 1.09004 * 109.67965 * 182.08136 * 15 14 12 43 43 H 1.08992 * 109.68105 * 302.62441 * 15 14 12 44 44 H 1.09000 * 109.73885 * 55.52732 * 16 15 14 45 45 H 1.09000 * 109.73655 * 176.22408 * 16 15 14 46 46 H 0.96998 * 120.00063 * 97.75032 * 19 17 16 47 47 H 0.97000 * 120.00684 * 180.02562 * 23 22 20 48 48 H 1.09005 * 110.50990 * 84.68745 * 30 10 8 49 49 H 1.08999 * 110.51349 * 321.98016 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5925 -0.6644 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8424 -2.4910 0.0081 8 6 1.5626 -2.9333 -1.4052 9 8 1.7240 -2.1602 -2.3256 10 7 1.1330 -4.1877 -1.6461 11 6 0.8964 -5.2237 -0.6280 12 6 0.4361 -6.5023 -1.3808 13 1 -0.3013 -7.0804 -0.8239 14 6 1.7013 -7.3120 -1.6715 15 6 1.4470 -8.3565 -2.7544 16 6 1.0639 -7.6288 -4.0485 17 6 -0.2419 -6.8927 -3.8130 18 1 -0.5131 -6.3589 -4.7239 19 7 -1.2852 -7.8751 -3.5088 20 6 -1.9200 -8.5369 -4.5258 21 1 -1.6512 -8.3349 -5.5521 22 6 -2.9081 -9.4681 -4.2376 23 7 -3.5187 -10.1038 -5.2150 24 14 -3.3726 -9.8181 -2.4623 25 1 -4.4634 -8.9006 -2.0459 26 1 -3.8344 -11.2241 -2.3395 27 1 -2.1890 -9.6080 -1.5904 28 6 -0.1478 -5.9078 -2.6758 29 1 -1.1379 -5.5012 -2.4693 30 6 0.8214 -4.7509 -2.9768 31 1 -0.3634 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3634 -0.8916 -0.5111 34 1 4.4098 1.3410 -0.0123 35 1 4.4775 -1.2833 -0.0080 36 1 0.9327 -2.5762 0.6023 37 1 2.6186 -3.1230 0.4395 38 1 0.1177 -4.8972 0.0613 39 1 1.8171 -5.4254 -0.0805 40 1 2.4899 -6.6368 -2.0039 41 1 2.0220 -7.8147 -0.7591 42 1 2.3506 -8.9438 -2.9175 43 1 0.6326 -9.0126 -2.4475 44 1 1.8408 -6.9108 -4.3110 45 1 0.9423 -8.3517 -4.8552 46 1 -1.5263 -8.0569 -2.5870 47 1 -4.2095 -10.7543 -5.0137 48 1 1.7267 -5.1259 -3.4544 49 1 0.3391 -4.0022 -3.6051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992918828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:03 Heat of formation + Delta-G solvation = 45.983745 kcal Electronic energy + Delta-G solvation = -29372.625013 eV Core-core repulsion = 25529.028519 eV Total energy + Delta-G solvation = -3843.596494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.36544 -40.82405 -38.93995 -35.94675 -34.27122 -33.60292 -31.94690 -31.74533 -31.03259 -30.01581 -28.32628 -27.03638 -26.69492 -24.70711 -22.80042 -22.23034 -21.62705 -21.24358 -20.50879 -19.41236 -18.41259 -17.92570 -17.52090 -17.15694 -16.41365 -15.83644 -15.50228 -14.90103 -14.64434 -14.58840 -14.25612 -14.18763 -14.08416 -13.77573 -13.37693 -13.28847 -13.20457 -13.01982 -12.82116 -12.71345 -12.57628 -12.51081 -12.19994 -11.91661 -11.64173 -11.44067 -11.28107 -11.00484 -10.86029 -10.57441 -10.37144 -10.21487 -10.16654 -9.98376 -9.76530 -9.67359 -9.62173 -8.96582 -8.90122 -8.51496 -7.34418 -5.83084 -3.19029 1.70361 2.18116 2.30461 2.80232 2.99789 3.27804 3.30847 3.38491 3.97515 4.17893 4.27606 4.28429 4.48994 4.50774 4.51594 4.57383 4.66716 4.97882 5.05301 5.13290 5.16728 5.22160 5.26503 5.31178 5.40779 5.48765 5.52862 5.52950 5.55336 5.63389 5.65713 5.72568 5.80069 5.87760 5.91770 6.03663 6.04560 6.15043 6.15845 6.26225 6.56077 6.60183 6.64945 6.79811 6.89641 6.90589 7.16721 7.74787 7.92193 7.92611 8.35534 9.13612 9.85677 10.05246 11.35316 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002661 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.807462 B =10519.571077 C =10853.734957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.220 3.780 3 N -0.492 5.492 4 C -0.026 4.026 5 C -0.052 4.052 6 N -0.443 5.443 7 C 0.090 3.910 8 C 0.509 3.491 9 O -0.521 6.521 10 N -0.612 5.612 11 C 0.095 3.905 12 C -0.089 4.089 13 H 0.098 0.902 14 C -0.110 4.110 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.193 3.807 18 H 0.056 0.944 19 N -0.745 5.745 20 C -0.241 4.241 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.099 4.099 29 H 0.082 0.918 30 C 0.116 3.884 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.076 0.924 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.162 12.778 15.047 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 N -0.212 5.212 4 C -0.173 4.173 5 C -0.184 4.184 6 N -0.126 5.126 7 C -0.037 4.037 8 C 0.294 3.706 9 O -0.397 6.397 10 N -0.347 5.347 11 C -0.028 4.028 12 C -0.108 4.108 13 H 0.117 0.883 14 C -0.148 4.148 15 C -0.151 4.151 16 C -0.173 4.173 17 C 0.084 3.916 18 H 0.074 0.926 19 N -0.388 5.388 20 C -0.371 4.371 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.118 4.118 29 H 0.100 0.900 30 C -0.006 4.006 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.193 0.807 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.876 13.883 14.342 23.753 hybrid contribution 0.015 -1.464 1.237 1.917 sum 12.891 12.419 15.579 23.730 Atomic orbital electron populations 1.20192 0.85105 1.04325 1.03194 1.23254 0.95632 0.81102 1.04192 1.70249 1.02319 1.28021 1.20575 1.22231 0.94785 0.92660 1.07658 1.22624 0.86645 0.96987 1.12160 1.44865 1.06854 1.05821 1.55109 1.21643 1.04089 0.81817 0.96172 1.20284 0.78219 0.81035 0.91018 1.90809 1.51437 1.51971 1.45456 1.48598 1.65552 1.10713 1.09794 1.22556 1.00679 0.88475 0.91070 1.22220 0.98125 0.94149 0.96273 0.88336 1.21556 0.96087 0.97889 0.99250 1.21401 1.01098 0.97451 0.95161 1.21981 0.97891 0.99631 0.97827 1.19271 0.88986 0.88871 0.94497 0.92639 1.42759 1.43291 1.47477 1.05244 1.19048 1.13445 1.15733 0.88871 0.89191 1.24658 0.98822 0.99042 0.96552 1.69690 1.28378 1.30004 1.30029 0.86594 0.78244 0.77578 0.86305 1.21188 1.21834 1.20361 1.21803 0.98819 0.95265 0.95962 0.89957 1.22261 0.99120 0.95270 0.83935 0.90153 0.88955 0.91092 0.81311 0.81046 0.86142 0.86060 0.91268 0.91006 0.92384 0.92426 0.92968 0.90744 0.93530 0.91077 0.80741 0.93046 0.90630 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.04 36.00 0.36 -0.26 16 2 C 0.22 2.64 7.88 -155.42 -1.23 1.42 16 3 N -0.49 -6.77 11.25 -10.82 -0.12 -6.89 16 4 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 5 C -0.05 -0.53 11.58 -16.56 -0.19 -0.73 16 6 N -0.44 -4.65 2.24 -115.19 -0.26 -4.91 16 7 C 0.09 0.68 5.35 -5.19 -0.03 0.66 16 8 C 0.51 5.71 7.92 -10.99 -0.09 5.62 16 9 O -0.52 -8.30 16.69 5.56 0.09 -8.21 16 10 N -0.61 -6.30 3.34 -170.07 -0.57 -6.86 16 11 C 0.10 0.75 5.79 -2.43 -0.01 0.74 16 12 C -0.09 -0.95 3.31 -88.85 -0.29 -1.24 16 13 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 14 C -0.11 -1.18 4.62 -26.94 -0.12 -1.31 16 15 C -0.11 -1.57 5.85 -26.77 -0.16 -1.73 16 16 C -0.13 -2.04 5.37 -27.20 -0.15 -2.19 16 17 C 0.19 3.22 2.45 -69.71 -0.17 3.04 16 18 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 19 N -0.74 -15.59 3.98 -55.17 -0.22 -15.81 16 20 C -0.24 -6.32 10.33 -15.06 -0.16 -6.47 16 21 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 22 C 0.01 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 24 Si 0.88 20.81 27.74 -169.99 -4.71 16.10 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16 28 C -0.10 -1.29 2.34 -90.78 -0.21 -1.50 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 C 0.12 1.41 5.83 -2.86 -0.02 1.39 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 0.62 7.94 -51.93 -0.41 0.21 16 37 H 0.12 0.59 8.13 -51.93 -0.42 0.16 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 7.74 -51.93 -0.40 0.03 16 40 H 0.06 0.60 7.16 -51.93 -0.37 0.23 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.23 7.41 -51.93 -0.38 0.84 16 44 H 0.05 0.62 6.80 -51.93 -0.35 0.27 16 45 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 46 H 0.36 7.37 5.24 -40.82 -0.21 7.15 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.08 0.93 6.15 -51.93 -0.32 0.61 16 49 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -34.81 384.00 -9.93 -44.74 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.94 Total: 6.63 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.77 Total: -3.02 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.39 Total: -62.02 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.81 -9.93 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992918828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.722 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds