Wall clock time and date at job start Tue Mar 31 2020 19:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30499 * 125.65133 * 2 1 4 4 C 1.34129 * 109.25741 * 180.29196 * 3 2 1 5 5 C 1.34675 * 108.01702 * 359.72685 * 4 3 2 6 6 N 1.35044 * 125.65156 * 179.82670 * 2 1 3 7 7 C 1.46507 * 126.39394 * 359.97310 * 6 2 1 8 8 C 1.50703 * 109.47126 * 84.71739 * 7 6 2 9 9 O 1.21282 * 119.99674 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00091 * 179.97438 * 8 7 6 11 11 C 1.47172 * 125.64786 * 359.97438 * 10 8 7 12 12 C 1.55352 * 106.96345 * 180.98079 * 11 10 8 13 13 H 1.09000 * 112.90880 * 214.96582 * 12 11 10 14 14 C 1.53001 * 106.41415 * 91.60634 * 12 11 10 15 15 C 1.52591 * 111.05028 * 197.20364 * 14 12 11 16 16 C 1.53331 * 108.40716 * 62.35545 * 15 14 12 17 17 C 1.51736 * 108.31284 * 296.21981 * 16 15 14 18 18 H 1.09006 * 108.77448 * 179.07959 * 17 16 15 19 19 N 1.46496 * 108.65028 * 297.55293 * 17 16 15 20 20 C 1.36937 * 119.99939 * 277.75352 * 19 17 16 21 21 H 1.08006 * 120.00205 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00299 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00624 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99753 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47179 * 89.99787 * 24 22 20 26 26 H 1.48499 * 109.46905 * 209.99639 * 24 22 20 27 27 H 1.48497 * 109.47074 * 329.99492 * 24 22 20 28 28 C 1.50731 * 112.35700 * 58.27374 * 17 16 15 29 29 H 1.09002 * 109.26814 * 187.02376 * 28 17 16 30 30 C 1.47816 * 125.65122 * 179.97438 * 10 8 7 31 31 H 1.09008 * 109.47248 * 270.17642 * 1 2 3 32 32 H 1.09001 * 109.47400 * 30.17537 * 1 2 3 33 33 H 1.09006 * 109.47457 * 150.17582 * 1 2 3 34 34 H 1.07995 * 125.99240 * 179.72261 * 4 3 2 35 35 H 1.07998 * 126.58798 * 180.02562 * 5 4 3 36 36 H 1.08994 * 109.47327 * 324.71627 * 7 6 2 37 37 H 1.08996 * 109.47081 * 204.71435 * 7 6 2 38 38 H 1.09001 * 109.96613 * 61.60961 * 11 10 8 39 39 H 1.09005 * 109.99650 * 300.37621 * 11 10 8 40 40 H 1.09002 * 109.16731 * 317.60710 * 14 12 11 41 41 H 1.08999 * 109.16684 * 76.85694 * 14 12 11 42 42 H 1.09004 * 109.67965 * 182.08136 * 15 14 12 43 43 H 1.08992 * 109.68105 * 302.62441 * 15 14 12 44 44 H 1.09000 * 109.73885 * 55.52732 * 16 15 14 45 45 H 1.09000 * 109.73655 * 176.22408 * 16 15 14 46 46 H 0.96998 * 120.00063 * 97.75032 * 19 17 16 47 47 H 0.97000 * 120.00684 * 180.02562 * 23 22 20 48 48 H 1.09005 * 110.50990 * 84.68745 * 30 10 8 49 49 H 1.08999 * 110.51349 * 321.98016 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0065 5 6 3.5925 -0.6644 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8424 -2.4910 0.0081 8 6 1.5626 -2.9333 -1.4052 9 8 1.7240 -2.1602 -2.3256 10 7 1.1330 -4.1877 -1.6461 11 6 0.8964 -5.2237 -0.6280 12 6 0.4361 -6.5023 -1.3808 13 1 -0.3013 -7.0804 -0.8239 14 6 1.7013 -7.3120 -1.6715 15 6 1.4470 -8.3565 -2.7544 16 6 1.0639 -7.6288 -4.0485 17 6 -0.2419 -6.8927 -3.8130 18 1 -0.5131 -6.3589 -4.7239 19 7 -1.2852 -7.8751 -3.5088 20 6 -1.9200 -8.5369 -4.5258 21 1 -1.6512 -8.3349 -5.5521 22 6 -2.9081 -9.4681 -4.2376 23 7 -3.5187 -10.1038 -5.2150 24 14 -3.3726 -9.8181 -2.4623 25 1 -4.4634 -8.9006 -2.0459 26 1 -3.8344 -11.2241 -2.3395 27 1 -2.1890 -9.6080 -1.5904 28 6 -0.1478 -5.9078 -2.6758 29 1 -1.1379 -5.5012 -2.4693 30 6 0.8214 -4.7509 -2.9768 31 1 -0.3634 0.0032 1.0277 32 1 -0.3634 0.8884 -0.5165 33 1 -0.3634 -0.8916 -0.5111 34 1 4.4098 1.3410 -0.0123 35 1 4.4775 -1.2833 -0.0080 36 1 0.9327 -2.5762 0.6023 37 1 2.6186 -3.1230 0.4395 38 1 0.1177 -4.8972 0.0613 39 1 1.8171 -5.4254 -0.0805 40 1 2.4899 -6.6368 -2.0039 41 1 2.0220 -7.8147 -0.7591 42 1 2.3506 -8.9438 -2.9175 43 1 0.6326 -9.0126 -2.4475 44 1 1.8408 -6.9108 -4.3110 45 1 0.9423 -8.3517 -4.8552 46 1 -1.5263 -8.0569 -2.5870 47 1 -4.2095 -10.7543 -5.0137 48 1 1.7267 -5.1259 -3.4544 49 1 0.3391 -4.0022 -3.6051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992918828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:02 Heat of formation + Delta-G solvation = 23.647986 kcal Electronic energy + Delta-G solvation = -29373.593564 eV Core-core repulsion = 25529.028519 eV Total energy + Delta-G solvation = -3844.565045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.11265 -41.76628 -39.93927 -37.18202 -35.15579 -34.98609 -33.36132 -32.64748 -32.05237 -31.39650 -29.20191 -27.92901 -27.52163 -25.99249 -24.29862 -23.31700 -22.38545 -22.32682 -21.33730 -20.17552 -19.91836 -19.32117 -18.44438 -18.00586 -17.32542 -16.70928 -16.48411 -16.44069 -15.67159 -15.60881 -15.42497 -15.23345 -14.97704 -14.82968 -14.59019 -14.32330 -14.09661 -14.01822 -13.90881 -13.60093 -13.46918 -13.26167 -13.24853 -13.01251 -12.86666 -12.73258 -12.56576 -12.41706 -12.11952 -12.01341 -11.80241 -11.53735 -11.31704 -11.22421 -10.98550 -10.90261 -10.71628 -10.50751 -9.73437 -9.27268 -9.26690 -7.98452 -5.31331 0.94191 1.37987 1.40351 1.43889 1.51250 1.62938 2.05701 2.18731 2.51905 3.22296 3.33230 3.43663 3.47420 3.59299 3.69666 3.78552 3.87499 4.00206 4.08084 4.16667 4.24784 4.34250 4.38442 4.41981 4.48148 4.55354 4.59764 4.64928 4.66530 4.74881 4.80110 4.82888 4.85137 4.88608 4.99060 5.04314 5.10123 5.15242 5.26850 5.29968 5.38100 5.46447 5.60667 5.65732 5.82125 5.83667 6.16623 6.25019 6.40757 6.95203 7.12635 7.14242 7.87609 8.09063 9.23589 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002661 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.807462 B =10519.571077 C =10853.734957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.201 3.799 3 N -0.535 5.535 4 C -0.057 4.057 5 C -0.047 4.047 6 N -0.445 5.445 7 C 0.093 3.907 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.606 5.606 11 C 0.098 3.902 12 C -0.090 4.090 13 H 0.103 0.897 14 C -0.103 4.103 15 C -0.112 4.112 16 C -0.129 4.129 17 C 0.191 3.809 18 H 0.027 0.973 19 N -0.742 5.742 20 C -0.222 4.222 21 H 0.049 0.951 22 C -0.070 4.070 23 N -0.990 5.990 24 Si 0.955 3.045 25 H -0.280 1.280 26 H -0.303 1.303 27 H -0.239 1.239 28 C -0.092 4.092 29 H 0.073 0.927 30 C 0.122 3.878 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.183 0.817 35 H 0.204 0.796 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.075 0.925 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.933 12.799 19.665 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.061 4.061 3 N -0.256 5.256 4 C -0.203 4.203 5 C -0.179 4.179 6 N -0.128 5.128 7 C -0.033 4.033 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.340 5.340 11 C -0.023 4.023 12 C -0.109 4.109 13 H 0.121 0.879 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.083 3.917 18 H 0.046 0.954 19 N -0.386 5.386 20 C -0.353 4.353 21 H 0.067 0.933 22 C -0.260 4.260 23 N -0.641 5.641 24 Si 0.782 3.218 25 H -0.207 1.207 26 H -0.230 1.230 27 H -0.163 1.163 28 C -0.112 4.112 29 H 0.092 0.908 30 C -0.001 4.001 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.200 0.800 35 H 0.221 0.779 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.201 0.799 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.697 13.919 19.012 27.770 hybrid contribution -0.478 -1.439 -0.390 1.566 sum 14.218 12.480 18.622 26.546 Atomic orbital electron populations 1.20262 0.83607 1.04033 1.04649 1.23733 0.96735 0.81484 1.04179 1.70189 1.03611 1.29736 1.22029 1.22660 0.94716 0.94092 1.08846 1.23148 0.87589 0.96895 1.10303 1.45045 1.06705 1.06701 1.54399 1.21966 1.06946 0.80635 0.93708 1.20943 0.76991 0.80382 0.92051 1.90800 1.53967 1.53500 1.47555 1.48591 1.64865 1.11151 1.09376 1.22750 1.03433 0.85885 0.90208 1.22262 0.98109 0.95723 0.94798 0.87925 1.21532 0.96308 0.97099 0.99074 1.21369 1.00515 0.98064 0.95022 1.21860 0.97689 0.99245 0.98103 1.19415 0.88314 0.88689 0.95328 0.95439 1.42660 1.43878 1.47773 1.04266 1.18958 1.12739 1.15050 0.88540 0.93295 1.25527 0.99395 0.99475 1.01631 1.69901 1.29723 1.31498 1.32944 0.85412 0.79088 0.76497 0.80808 1.20683 1.23015 1.16321 1.21550 0.99063 0.94620 0.95987 0.90842 1.21993 0.98541 0.94339 0.85210 0.87727 0.89844 0.90759 0.80007 0.77926 0.82959 0.82071 0.88421 0.87307 0.91358 0.89547 0.91901 0.93341 0.91342 0.94858 0.79883 0.93590 0.90652 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.04 71.23 0.72 -0.36 16 2 C 0.20 4.52 7.88 138.13 1.09 5.60 16 3 N -0.54 -14.51 11.25 -188.13 -2.12 -16.63 16 4 C -0.06 -1.26 11.87 83.52 0.99 -0.27 16 5 C -0.05 -0.84 11.58 83.09 0.96 0.12 16 6 N -0.45 -7.97 2.24 -518.34 -1.16 -9.14 16 7 C 0.09 0.94 5.35 85.63 0.46 1.39 16 8 C 0.51 9.65 7.92 87.66 0.69 10.35 16 9 O -0.58 -17.72 16.69 -3.04 -0.05 -17.77 16 10 N -0.61 -10.05 3.34 -810.36 -2.71 -12.75 16 11 C 0.10 0.94 5.79 87.06 0.50 1.44 16 12 C -0.09 -1.51 3.31 -9.65 -0.03 -1.54 16 13 H 0.10 1.73 8.02 -2.39 -0.02 1.71 16 14 C -0.10 -1.70 4.62 30.46 0.14 -1.56 16 15 C -0.11 -2.83 5.85 30.57 0.18 -2.65 16 16 C -0.13 -3.95 5.37 30.29 0.16 -3.79 16 17 C 0.19 6.40 2.45 43.84 0.11 6.50 16 18 H 0.03 1.06 8.07 -2.38 -0.02 1.04 16 19 N -0.74 -31.12 3.98 -328.45 -1.31 -32.42 16 20 C -0.22 -12.07 10.33 84.03 0.87 -11.20 16 21 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.99 -62.68 13.97 21.65 0.30 -62.38 16 24 Si 0.95 42.90 27.74 68.60 1.90 44.80 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.24 -9.12 6.52 99.48 0.65 -8.47 16 28 C -0.09 -2.24 2.34 -10.89 -0.03 -2.26 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 C 0.12 2.77 5.83 86.43 0.50 3.27 16 31 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.11 7.84 -2.38 -0.02 1.09 16 34 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.15 0.61 7.94 -2.39 -0.02 0.59 16 37 H 0.16 0.39 8.13 -2.39 -0.02 0.37 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.11 0.38 7.74 -2.38 -0.02 0.36 16 40 H 0.07 1.04 7.16 -2.39 -0.02 1.02 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.05 1.49 7.41 -2.39 -0.02 1.47 16 44 H 0.07 1.78 6.80 -2.39 -0.02 1.76 16 45 H 0.03 1.24 8.12 -2.39 -0.02 1.22 16 46 H 0.37 14.34 5.24 -92.71 -0.49 13.86 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.08 1.71 6.15 -2.38 -0.01 1.69 16 49 H 0.06 1.57 8.07 -2.39 -0.02 1.56 16 Total: -1.00 -83.40 384.00 3.05 -80.35 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.40 Total: 24.39 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 7.78 Total: 1.54 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -6.99 Total: -133.32 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.90 Total: 44.80 kcal Total: -83.40 3.05 -80.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992918828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.001 kcal (2) G-P(sol) polarization free energy of solvation -83.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds