Wall clock time and date at job start Tue Mar 31 2020 21:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47419 * 2 1 4 4 N 1.31927 * 120.16870 * 263.94182 * 3 2 1 5 5 N 1.28282 * 122.32375 * 180.02562 * 4 3 2 6 6 C 1.31915 * 122.51478 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.01569 * 180.02562 * 6 5 4 8 8 C 1.38512 * 119.97199 * 359.71286 * 6 5 4 9 9 C 1.39723 * 120.17583 * 83.96183 * 3 2 1 10 10 C 1.48138 * 121.14029 * 359.97438 * 9 3 2 11 11 O 1.21513 * 120.00187 * 354.64097 * 10 9 3 12 12 N 1.34778 * 119.99827 * 174.63788 * 10 9 3 13 13 C 1.46498 * 119.99971 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.50204 * 325.06865 * 13 12 10 15 15 C 1.53043 * 109.49647 * 85.16829 * 13 12 10 16 16 C 1.53032 * 109.54258 * 58.58275 * 15 13 12 17 17 C 1.53196 * 109.31272 * 61.36446 * 16 15 13 18 18 N 1.46926 * 108.77337 * 305.36884 * 17 16 15 19 19 C 1.36936 * 120.62542 * 233.62286 * 18 17 16 20 20 H 1.08002 * 119.99723 * 150.20646 * 19 18 17 21 21 C 1.38816 * 120.00673 * 330.20587 * 19 18 17 22 22 N 1.31620 * 119.99585 * 344.85437 * 21 19 18 23 23 Si 1.86795 * 120.00271 * 164.85731 * 21 19 18 24 24 H 1.48496 * 109.47493 * 89.99863 * 23 21 19 25 25 H 1.48504 * 109.46975 * 210.00420 * 23 21 19 26 26 H 1.48498 * 109.46854 * 329.99681 * 23 21 19 27 27 C 1.46915 * 118.74195 * 53.61044 * 18 17 16 28 28 H 1.09000 * 109.59267 * 66.31256 * 27 18 17 29 29 C 1.52999 * 109.58993 * 186.60212 * 27 18 17 30 30 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47089 * 300.00063 * 1 2 3 32 32 H 1.09000 * 109.46616 * 60.00137 * 1 2 3 33 33 H 1.08998 * 109.47089 * 239.99937 * 2 1 3 34 34 H 1.09002 * 109.47123 * 119.99767 * 2 1 3 35 35 H 1.09000 * 109.47358 * 89.99722 * 7 6 5 36 36 H 1.09002 * 109.47010 * 210.00254 * 7 6 5 37 37 H 1.09001 * 109.46557 * 329.99416 * 7 6 5 38 38 H 1.07992 * 121.09207 * 180.30868 * 8 6 5 39 39 H 0.97001 * 120.00130 * 359.97438 * 12 10 9 40 40 H 1.09003 * 109.45798 * 298.56142 * 15 13 12 41 41 H 1.08996 * 109.46223 * 178.60940 * 15 13 12 42 42 H 1.09003 * 109.49985 * 301.41555 * 16 15 13 43 43 H 1.08998 * 109.50078 * 181.32010 * 16 15 13 44 44 H 1.09005 * 109.58427 * 65.15362 * 17 16 15 45 45 H 1.08997 * 109.58782 * 185.57666 * 17 16 15 46 46 H 0.97001 * 120.00019 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.46944 * 59.99069 * 29 27 18 48 48 H 1.08999 * 109.47662 * 179.97438 * 29 27 18 49 49 H 1.08998 * 109.46642 * 299.99953 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3670 2.0057 -1.1342 5 7 2.7996 3.2125 -1.1821 6 6 2.9428 3.9578 -0.1031 7 6 3.4556 5.3696 -0.2247 8 6 2.6154 3.4443 1.1409 9 6 2.1468 2.1253 1.2012 10 6 1.7803 1.5007 2.4935 11 8 1.2811 0.3931 2.5131 12 7 2.0007 2.1611 3.6476 13 6 1.6388 1.5432 4.9256 14 1 0.7341 0.9486 4.7991 15 6 2.7814 0.6415 5.3987 16 6 4.0601 1.4695 5.5446 17 6 3.8392 2.5618 6.5958 18 7 2.6529 3.3442 6.2227 19 6 2.7226 4.7073 6.1124 20 1 2.0773 5.2267 5.4193 21 6 3.6225 5.4217 6.8914 22 7 4.1900 4.8503 7.9324 23 14 4.0280 7.1939 6.4621 24 1 3.0837 8.1013 7.1620 25 1 5.4172 7.5009 6.8880 26 1 3.9058 7.3882 4.9950 27 6 1.3906 2.6363 5.9699 28 1 1.0325 2.1856 6.8956 29 6 0.3464 3.6221 5.4420 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.6158 6.0508 -0.3616 36 1 3.9977 5.6386 0.6819 37 1 4.1245 5.4405 -1.0825 38 1 2.7208 4.0401 2.0355 39 1 2.3996 3.0451 3.6320 40 1 2.9438 -0.1518 4.6691 41 1 2.5219 0.2015 6.3615 42 1 4.3065 1.9300 4.5878 43 1 4.8788 0.8223 5.8590 44 1 3.6822 2.1030 7.5720 45 1 4.7110 3.2150 6.6328 46 1 4.8191 5.3493 8.4766 47 1 0.7041 4.0679 4.5138 48 1 -0.5891 3.0950 5.2547 49 1 0.1805 4.4059 6.1811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993499242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:26 Heat of formation + Delta-G solvation = 32.855681 kcal Electronic energy + Delta-G solvation = -30356.766356 eV Core-core repulsion = 26512.600587 eV Total energy + Delta-G solvation = -3844.165770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 13.17 seconds Orbital eigenvalues (eV) -41.46315 -39.72638 -37.82332 -35.23101 -34.08685 -33.75333 -32.60015 -32.03345 -31.28054 -29.45111 -28.07496 -26.46834 -25.37266 -25.12382 -24.32646 -22.36868 -21.78791 -21.03431 -20.55167 -18.95118 -17.71932 -17.61885 -16.52114 -16.04219 -15.53592 -15.51608 -15.00977 -14.78659 -14.62799 -14.14463 -14.02259 -13.86856 -13.65253 -13.37379 -13.26128 -13.15415 -13.04825 -12.68931 -12.49082 -12.35688 -11.98232 -11.81486 -11.43190 -11.36617 -11.10679 -11.03317 -10.87389 -10.80726 -10.71724 -10.64587 -10.29915 -10.28724 -10.22571 -10.12699 -9.80123 -9.59788 -9.44797 -9.34992 -8.72603 -8.59092 -6.79687 -5.93278 -3.39718 0.26866 0.74421 2.80858 3.20272 3.25173 3.31517 3.34233 3.52881 3.80484 4.17926 4.28757 4.33619 4.56377 4.74417 4.92619 5.15638 5.18731 5.21045 5.25604 5.37248 5.40033 5.43264 5.45870 5.49096 5.55946 5.61781 5.80490 5.81929 5.83501 5.95857 5.99422 6.07028 6.09112 6.17372 6.26800 6.28854 6.31992 6.40602 6.53016 6.55252 6.65169 6.80783 6.82565 6.93054 7.25877 7.54620 7.64966 7.71471 8.28199 8.30691 8.58065 9.05617 9.68481 10.25866 11.14576 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.004524 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.011745 B = 6188.134089 C = 7714.505373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C 0.117 3.883 4 N -0.244 5.244 5 N -0.230 5.230 6 C 0.059 3.941 7 C -0.102 4.102 8 C -0.081 4.081 9 C -0.123 4.123 10 C 0.554 3.446 11 O -0.528 6.528 12 N -0.688 5.688 13 C 0.134 3.866 14 H 0.080 0.920 15 C -0.121 4.121 16 C -0.141 4.141 17 C 0.171 3.829 18 N -0.586 5.586 19 C -0.262 4.262 20 H 0.069 0.931 21 C 0.009 3.991 22 N -0.897 5.897 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.158 3.842 28 H 0.042 0.958 29 C -0.136 4.136 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.408 0.592 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.086 0.914 46 H 0.255 0.745 47 H 0.050 0.950 48 H 0.040 0.960 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -4.375 -11.050 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.028 4.028 4 N -0.086 5.086 5 N -0.073 5.073 6 C -0.085 4.085 7 C -0.160 4.160 8 C -0.111 4.111 9 C -0.137 4.137 10 C 0.339 3.661 11 O -0.406 6.406 12 N -0.339 5.339 13 C 0.028 3.972 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.180 4.180 17 C 0.046 3.954 18 N -0.310 5.310 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.051 3.949 28 H 0.060 0.940 29 C -0.194 4.194 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.175 0.825 39 H 0.245 0.755 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.614 -5.179 -12.511 14.014 hybrid contribution 0.460 1.592 1.558 2.275 sum -3.154 -3.586 -10.953 11.949 Atomic orbital electron populations 1.21575 0.93537 1.02255 1.01675 1.20678 0.97187 0.88773 1.04612 1.23100 0.92490 0.98610 0.88596 1.73022 1.08333 1.03210 1.23987 1.72800 1.07879 0.99581 1.27047 1.22853 0.96682 0.98940 0.90007 1.20719 1.01991 0.88888 1.04400 1.22680 0.93801 0.94609 0.99990 1.21224 1.01236 0.95109 0.96134 1.17859 0.79517 0.85518 0.83199 1.90701 1.44105 1.18930 1.86903 1.45957 1.61508 1.21194 1.05228 1.21644 0.97252 0.95475 0.82806 0.90157 1.21774 0.96191 0.97435 1.00556 1.22149 0.95755 0.98742 1.01365 1.20804 0.91504 0.90937 0.92183 1.44165 1.02992 1.02744 1.81076 1.19098 1.20894 0.82057 1.17036 0.91297 1.25114 1.01216 0.97570 0.95152 1.70013 1.31589 1.36675 1.15738 0.86376 0.77648 0.85082 0.78063 1.21359 1.21590 1.20454 1.20735 0.88585 0.91620 0.93989 0.94014 1.21790 0.96628 0.99586 1.01352 0.91837 0.91889 0.93413 0.90520 0.87179 0.89680 0.89712 0.89840 0.82471 0.75462 0.93002 0.91647 0.93055 0.93322 0.96276 0.89563 0.93526 0.93061 0.94105 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.51 37.16 0.35 -1.22 16 2 C -0.07 -0.94 5.48 -27.88 -0.15 -1.09 16 3 C 0.12 1.67 6.16 -82.00 -0.51 1.17 16 4 N -0.24 -3.72 11.42 33.81 0.39 -3.34 16 5 N -0.23 -3.37 11.41 33.57 0.38 -2.99 16 6 C 0.06 0.74 6.86 -82.45 -0.57 0.18 16 7 C -0.10 -0.93 10.19 36.01 0.37 -0.56 16 8 C -0.08 -1.02 9.35 -38.78 -0.36 -1.38 16 9 C -0.12 -1.72 5.92 -104.58 -0.62 -2.34 16 10 C 0.55 8.31 7.71 -12.19 -0.09 8.21 16 11 O -0.53 -8.58 11.69 5.35 0.06 -8.52 16 12 N -0.69 -10.37 3.41 -54.54 -0.19 -10.55 16 13 C 0.13 2.15 2.33 -67.81 -0.16 1.99 16 14 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 15 C -0.12 -1.95 5.58 -26.69 -0.15 -2.10 16 16 C -0.14 -2.48 5.93 -26.61 -0.16 -2.63 16 17 C 0.17 3.65 5.28 -3.71 -0.02 3.63 16 18 N -0.59 -12.46 2.64 -164.77 -0.44 -12.89 16 19 C -0.26 -6.10 8.57 -15.06 -0.13 -6.23 16 20 H 0.07 1.55 6.24 -52.49 -0.33 1.22 16 21 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 22 N -0.90 -23.91 11.21 55.49 0.62 -23.28 16 23 Si 0.90 19.66 29.58 -169.99 -5.03 14.63 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 C 0.16 2.85 3.20 -67.60 -0.22 2.64 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 C -0.14 -2.25 7.74 37.16 0.29 -1.96 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.51 5.89 -51.93 -0.31 1.20 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.16 1.75 6.65 -52.49 -0.35 1.40 16 39 H 0.41 6.24 5.99 -40.82 -0.24 6.00 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 2.09 6.13 -51.93 -0.32 1.77 16 46 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 47 H 0.05 0.82 6.39 -51.93 -0.33 0.49 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 1.19 7.63 -51.93 -0.40 0.80 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -27.39 380.33 -8.29 -35.68 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.62 Total: 7.11 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.21 Total: -1.58 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.77 Total: -53.06 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.06 Total: -8.52 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.39 -8.29 -35.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993499242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.536 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.17 seconds