Wall clock time and date at job start Tue Mar 31 2020 21:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47391 * 2 1 4 4 C 1.38550 * 120.01639 * 125.27403 * 3 2 1 5 5 C 1.40077 * 117.81309 * 180.26104 * 4 3 2 6 6 C 1.48134 * 121.14094 * 179.73997 * 5 4 3 7 7 O 1.21521 * 119.99842 * 174.18060 * 6 5 4 8 8 N 1.34774 * 120.00618 * 354.17989 * 6 5 4 9 9 C 1.46497 * 120.00500 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.49460 * 34.94224 * 9 8 6 11 11 C 1.53035 * 109.52755 * 274.86048 * 9 8 6 12 12 C 1.53036 * 109.53774 * 301.39596 * 11 9 8 13 13 C 1.53628 * 109.24399 * 298.51023 * 12 11 9 14 14 N 1.46927 * 108.53921 * 54.85647 * 13 12 11 15 15 C 1.36939 * 120.63189 * 126.37390 * 14 13 12 16 16 H 1.07997 * 119.99875 * 208.57420 * 15 14 13 17 17 C 1.38807 * 119.99927 * 28.56835 * 15 14 13 18 18 N 1.31626 * 120.00142 * 16.79803 * 17 15 14 19 19 Si 1.86796 * 120.00080 * 196.79814 * 17 15 14 20 20 H 1.48502 * 109.47206 * 265.19278 * 19 17 15 21 21 H 1.48501 * 109.47044 * 25.19500 * 19 17 15 22 22 H 1.48507 * 109.47278 * 145.19299 * 19 17 15 23 23 C 1.46932 * 118.73839 * 306.09490 * 14 13 12 24 24 H 1.09002 * 109.58466 * 294.07606 * 23 14 13 25 25 C 1.52997 * 109.58584 * 173.65078 * 23 14 13 26 26 C 1.39765 * 117.70851 * 359.47889 * 5 4 3 27 27 C 1.50699 * 120.16962 * 180.29430 * 26 5 4 28 28 N 1.31892 * 119.65870 * 0.26216 * 26 5 4 29 29 N 1.28279 * 122.32790 * 0.02562 * 28 26 5 30 30 H 1.09004 * 109.47466 * 300.00719 * 1 2 3 31 31 H 1.09010 * 109.46589 * 60.00214 * 1 2 3 32 32 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47153 * 239.99606 * 2 1 3 34 34 H 1.09010 * 109.46589 * 119.99786 * 2 1 3 35 35 H 1.07995 * 121.09132 * 0.02562 * 4 3 2 36 36 H 0.97006 * 119.99757 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.46215 * 61.41327 * 11 9 8 38 38 H 1.08999 * 109.46279 * 181.38946 * 11 9 8 39 39 H 1.09002 * 109.50151 * 58.58526 * 12 11 9 40 40 H 1.08999 * 109.50252 * 178.65314 * 12 11 9 41 41 H 1.09003 * 109.74039 * 295.12026 * 13 12 11 42 42 H 1.09002 * 109.66810 * 174.54648 * 13 12 11 43 43 H 0.96997 * 120.00202 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47176 * 59.99920 * 25 23 14 45 45 H 1.09006 * 109.47110 * 179.97438 * 25 23 14 46 46 H 1.09001 * 109.47497 * 300.00079 * 25 23 14 47 47 H 1.09003 * 109.47455 * 83.60752 * 27 26 5 48 48 H 1.09001 * 109.47130 * 203.60453 * 27 26 5 49 49 H 1.09001 * 109.47311 * 323.60209 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9166 1.8433 0.9794 5 6 3.3496 3.1748 0.9387 6 6 4.2901 3.7059 1.9526 7 8 4.7347 4.8311 1.8385 8 7 4.6527 2.9413 3.0015 9 6 5.5832 3.4663 4.0038 10 1 5.4081 4.5337 4.1389 11 6 7.0220 3.2400 3.5343 12 6 7.2589 1.7444 3.3128 13 6 7.0612 0.9984 4.6412 14 7 5.7293 1.3266 5.1676 15 6 4.8471 0.3340 5.5017 16 1 3.7839 0.5134 5.4403 17 6 5.3193 -0.9028 5.9190 18 7 6.5691 -1.0320 6.3110 19 14 4.1810 -2.3839 5.9242 20 1 3.5868 -2.5467 7.2753 21 1 3.0984 -2.1796 4.9285 22 1 4.9531 -3.6028 5.5728 23 6 5.3644 2.7400 5.3347 24 1 5.9911 3.1907 6.1043 25 6 3.8930 2.8452 5.7407 26 6 2.8681 3.9834 -0.0946 27 6 3.3030 5.4228 -0.1952 28 7 2.0317 3.4801 -0.9815 29 7 1.6345 2.2612 -0.9353 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.2578 1.1692 1.7511 36 1 4.2980 2.0430 3.0924 37 1 7.1876 3.7761 2.5998 38 1 7.7135 3.6087 4.2919 39 1 6.5512 1.3695 2.5734 40 1 8.2764 1.5861 2.9555 41 1 7.8234 1.3099 5.3554 42 1 7.1329 -0.0762 4.4726 43 1 6.8990 -1.8961 6.6029 44 1 3.7370 2.3171 6.6813 45 1 3.6244 3.8944 5.8645 46 1 3.2694 2.3992 4.9659 47 1 4.2611 5.4777 -0.7120 48 1 2.5569 5.9897 -0.7521 49 1 3.4054 5.8423 0.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993630146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:57 Heat of formation + Delta-G solvation = 31.602710 kcal Electronic energy + Delta-G solvation = -30166.296240 eV Core-core repulsion = 26322.076137 eV Total energy + Delta-G solvation = -3844.220103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 15.16 seconds Orbital eigenvalues (eV) -41.44774 -39.73973 -37.79467 -35.36609 -34.18038 -33.66014 -32.55907 -32.00527 -31.34580 -29.52684 -27.88186 -26.52908 -25.76478 -25.12150 -23.56146 -22.92141 -21.91277 -20.99869 -20.47471 -18.95833 -17.64717 -17.58936 -16.52904 -15.80051 -15.76922 -15.44409 -15.12940 -14.86685 -14.76654 -14.22507 -14.06841 -13.97482 -13.59825 -13.40438 -13.20949 -13.05098 -12.96904 -12.70548 -12.42228 -12.22794 -11.97964 -11.93986 -11.41292 -11.39027 -11.33225 -11.09774 -10.91609 -10.80198 -10.73808 -10.64047 -10.30539 -10.29442 -10.22806 -10.13604 -9.79941 -9.58595 -9.43290 -9.39422 -8.73175 -8.58664 -6.81558 -5.93553 -3.38343 0.26754 0.74497 2.80482 3.19916 3.25180 3.32141 3.34576 3.52509 3.79545 4.14664 4.30192 4.33891 4.55611 4.72106 4.91028 4.99636 5.09324 5.17485 5.20299 5.38881 5.40900 5.43049 5.46046 5.54949 5.61306 5.66190 5.72547 5.81715 5.82566 5.87781 5.97941 6.00685 6.08861 6.14573 6.17233 6.26579 6.30220 6.40358 6.51934 6.54399 6.64613 6.80027 6.82189 6.92690 7.25027 7.53872 7.65429 7.70908 8.27203 8.29822 8.57921 9.05243 9.68568 10.25469 11.14313 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.004797 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.166091 B = 5835.893684 C = 7770.289305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C 0.061 3.939 4 C -0.078 4.078 5 C -0.126 4.126 6 C 0.556 3.444 7 O -0.533 6.533 8 N -0.688 5.688 9 C 0.134 3.866 10 H 0.080 0.920 11 C -0.121 4.121 12 C -0.141 4.141 13 C 0.171 3.829 14 N -0.586 5.586 15 C -0.261 4.261 16 H 0.071 0.929 17 C 0.008 3.992 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.278 1.278 22 H -0.290 1.290 23 C 0.158 3.842 24 H 0.042 0.958 25 C -0.136 4.136 26 C 0.114 3.886 27 C -0.102 4.102 28 N -0.247 5.247 29 N -0.224 5.224 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.408 0.592 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.019 0.981 42 H 0.087 0.913 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 5.484 -9.151 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.108 4.108 5 C -0.140 4.140 6 C 0.340 3.660 7 O -0.411 6.411 8 N -0.339 5.339 9 C 0.028 3.972 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.180 4.180 13 C 0.045 3.955 14 N -0.310 5.310 15 C -0.391 4.391 16 H 0.088 0.912 17 C -0.191 4.191 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.204 1.204 22 H -0.216 1.216 23 C 0.051 3.949 24 H 0.060 0.940 25 C -0.194 4.194 26 C -0.030 4.030 27 C -0.160 4.160 28 N -0.089 5.089 29 N -0.067 5.067 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.246 0.754 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.404 6.371 -10.474 13.831 hybrid contribution 0.361 -1.674 1.458 2.249 sum -6.043 4.697 -9.016 11.827 Atomic orbital electron populations 1.21703 0.93681 1.02213 1.02739 1.20493 0.97353 0.88913 1.04164 1.22838 0.94611 0.98715 0.92175 1.22708 0.94222 0.95348 0.98490 1.21219 0.99889 0.94827 0.98092 1.17864 0.81075 0.85526 0.81498 1.90706 1.55661 1.18605 1.76155 1.45952 1.45994 1.18452 1.23453 1.21647 0.88242 0.98074 0.89241 0.90175 1.21775 0.95876 0.97698 1.00632 1.22218 0.99564 0.95079 1.01140 1.20905 0.85686 0.99712 0.89172 1.44214 1.14441 0.98930 1.73416 1.19126 0.89046 0.91176 1.39705 0.91187 1.25078 0.96348 0.99329 0.98365 1.70030 1.15107 1.23648 1.45211 0.86374 0.80096 0.82886 0.77923 1.21447 1.20379 1.21571 1.20736 0.95080 0.87487 0.91637 0.94012 1.21790 0.96065 0.99357 1.02169 1.23100 0.91664 0.98740 0.89518 1.20941 1.01549 0.88008 1.05540 1.73040 1.09327 1.05486 1.21016 1.72719 1.17338 0.97522 1.19131 0.92707 0.91526 0.91819 0.89334 0.89375 0.82460 0.75420 0.93002 0.91623 0.93039 0.93333 0.96238 0.89485 0.93544 0.91588 0.94090 0.93006 0.89638 0.90924 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.78 37.16 0.36 -0.98 16 2 C -0.07 -0.69 6.35 -27.88 -0.18 -0.87 16 3 C 0.06 0.77 6.25 -82.45 -0.52 0.25 16 4 C -0.08 -0.99 9.29 -38.78 -0.36 -1.35 16 5 C -0.13 -1.77 5.92 -104.57 -0.62 -2.39 16 6 C 0.56 8.44 7.71 -12.20 -0.09 8.35 16 7 O -0.53 -8.91 13.18 5.35 0.07 -8.84 16 8 N -0.69 -10.46 3.42 -54.55 -0.19 -10.65 16 9 C 0.13 2.16 2.32 -67.82 -0.16 2.00 16 10 H 0.08 1.28 7.58 -51.92 -0.39 0.89 16 11 C -0.12 -1.97 5.58 -26.69 -0.15 -2.12 16 12 C -0.14 -2.47 5.94 -26.39 -0.16 -2.63 16 13 C 0.17 3.64 5.33 -3.48 -0.02 3.62 16 14 N -0.59 -12.48 2.64 -164.51 -0.43 -12.91 16 15 C -0.26 -6.11 8.59 -15.06 -0.13 -6.24 16 16 H 0.07 1.58 6.21 -52.49 -0.33 1.26 16 17 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 18 N -0.90 -23.89 11.22 55.49 0.62 -23.27 16 19 Si 0.90 19.67 29.59 -169.99 -5.03 14.64 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.16 2.87 3.20 -67.60 -0.22 2.65 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 C -0.14 -2.27 7.73 37.16 0.29 -1.99 16 26 C 0.11 1.62 6.91 -82.00 -0.57 1.06 16 27 C -0.10 -1.26 8.98 36.01 0.32 -0.94 16 28 N -0.25 -3.71 11.42 33.81 0.39 -3.33 16 29 N -0.22 -3.25 11.04 33.58 0.37 -2.88 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.66 7.96 -51.92 -0.41 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.78 7.92 -51.92 -0.41 0.37 16 35 H 0.16 1.79 6.59 -52.49 -0.35 1.45 16 36 H 0.41 6.28 6.00 -40.82 -0.24 6.04 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 2.10 6.09 -51.93 -0.32 1.79 16 43 H 0.25 6.65 8.31 -40.82 -0.34 6.32 16 44 H 0.07 1.20 7.61 -51.93 -0.40 0.80 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.85 6.40 -51.93 -0.33 0.51 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.10 1.38 5.92 -51.93 -0.31 1.07 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -27.44 382.31 -8.37 -35.82 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.66 Total: 7.11 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.27 Total: -1.45 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.76 Total: -53.04 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.44 -8.37 -35.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993630146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.421 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.16 seconds