Wall clock time and date at job start Tue Mar 31 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47391 * 2 1 4 4 C 1.38550 * 120.01639 * 125.27403 * 3 2 1 5 5 C 1.40077 * 117.81309 * 180.26104 * 4 3 2 6 6 C 1.48134 * 121.14094 * 179.73997 * 5 4 3 7 7 O 1.21521 * 119.99842 * 174.18060 * 6 5 4 8 8 N 1.34774 * 120.00618 * 354.17989 * 6 5 4 9 9 C 1.46497 * 120.00500 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.49460 * 34.94224 * 9 8 6 11 11 C 1.53035 * 109.52755 * 274.86048 * 9 8 6 12 12 C 1.53036 * 109.53774 * 301.39596 * 11 9 8 13 13 C 1.53628 * 109.24399 * 298.51023 * 12 11 9 14 14 N 1.46927 * 108.53921 * 54.85647 * 13 12 11 15 15 C 1.36939 * 120.63189 * 126.37390 * 14 13 12 16 16 H 1.07997 * 119.99875 * 208.57420 * 15 14 13 17 17 C 1.38807 * 119.99927 * 28.56835 * 15 14 13 18 18 N 1.31626 * 120.00142 * 16.79803 * 17 15 14 19 19 Si 1.86796 * 120.00080 * 196.79814 * 17 15 14 20 20 H 1.48502 * 109.47206 * 265.19278 * 19 17 15 21 21 H 1.48501 * 109.47044 * 25.19500 * 19 17 15 22 22 H 1.48507 * 109.47278 * 145.19299 * 19 17 15 23 23 C 1.46932 * 118.73839 * 306.09490 * 14 13 12 24 24 H 1.09002 * 109.58466 * 294.07606 * 23 14 13 25 25 C 1.52997 * 109.58584 * 173.65078 * 23 14 13 26 26 C 1.39765 * 117.70851 * 359.47889 * 5 4 3 27 27 C 1.50699 * 120.16962 * 180.29430 * 26 5 4 28 28 N 1.31892 * 119.65870 * 0.26216 * 26 5 4 29 29 N 1.28279 * 122.32790 * 0.02562 * 28 26 5 30 30 H 1.09004 * 109.47466 * 300.00719 * 1 2 3 31 31 H 1.09010 * 109.46589 * 60.00214 * 1 2 3 32 32 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47153 * 239.99606 * 2 1 3 34 34 H 1.09010 * 109.46589 * 119.99786 * 2 1 3 35 35 H 1.07995 * 121.09132 * 0.02562 * 4 3 2 36 36 H 0.97006 * 119.99757 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.46215 * 61.41327 * 11 9 8 38 38 H 1.08999 * 109.46279 * 181.38946 * 11 9 8 39 39 H 1.09002 * 109.50151 * 58.58526 * 12 11 9 40 40 H 1.08999 * 109.50252 * 178.65314 * 12 11 9 41 41 H 1.09003 * 109.74039 * 295.12026 * 13 12 11 42 42 H 1.09002 * 109.66810 * 174.54648 * 13 12 11 43 43 H 0.96997 * 120.00202 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47176 * 59.99920 * 25 23 14 45 45 H 1.09006 * 109.47110 * 179.97438 * 25 23 14 46 46 H 1.09001 * 109.47497 * 300.00079 * 25 23 14 47 47 H 1.09003 * 109.47455 * 83.60752 * 27 26 5 48 48 H 1.09001 * 109.47130 * 203.60453 * 27 26 5 49 49 H 1.09001 * 109.47311 * 323.60209 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9166 1.8433 0.9794 5 6 3.3496 3.1748 0.9387 6 6 4.2901 3.7059 1.9526 7 8 4.7347 4.8311 1.8385 8 7 4.6527 2.9413 3.0015 9 6 5.5832 3.4663 4.0038 10 1 5.4081 4.5337 4.1389 11 6 7.0220 3.2400 3.5343 12 6 7.2589 1.7444 3.3128 13 6 7.0612 0.9984 4.6412 14 7 5.7293 1.3266 5.1676 15 6 4.8471 0.3340 5.5017 16 1 3.7839 0.5134 5.4403 17 6 5.3193 -0.9028 5.9190 18 7 6.5691 -1.0320 6.3110 19 14 4.1810 -2.3839 5.9242 20 1 3.5868 -2.5467 7.2753 21 1 3.0984 -2.1796 4.9285 22 1 4.9531 -3.6028 5.5728 23 6 5.3644 2.7400 5.3347 24 1 5.9911 3.1907 6.1043 25 6 3.8930 2.8452 5.7407 26 6 2.8681 3.9834 -0.0946 27 6 3.3030 5.4228 -0.1952 28 7 2.0317 3.4801 -0.9815 29 7 1.6345 2.2612 -0.9353 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.2578 1.1692 1.7511 36 1 4.2980 2.0430 3.0924 37 1 7.1876 3.7761 2.5998 38 1 7.7135 3.6087 4.2919 39 1 6.5512 1.3695 2.5734 40 1 8.2764 1.5861 2.9555 41 1 7.8234 1.3099 5.3554 42 1 7.1329 -0.0762 4.4726 43 1 6.8990 -1.8961 6.6029 44 1 3.7370 2.3171 6.6813 45 1 3.6244 3.8944 5.8645 46 1 3.2694 2.3992 4.9659 47 1 4.2611 5.4777 -0.7120 48 1 2.5569 5.9897 -0.7521 49 1 3.4054 5.8423 0.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993630146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:26 Heat of formation + Delta-G solvation = 17.375894 kcal Electronic energy + Delta-G solvation = -30166.913161 eV Core-core repulsion = 26322.076137 eV Total energy + Delta-G solvation = -3844.837024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -42.51630 -41.01055 -39.20497 -36.33568 -35.62694 -34.81349 -33.96954 -33.44619 -32.45623 -31.04075 -28.87697 -27.94149 -26.97823 -26.71731 -24.47270 -24.16795 -23.25205 -22.40836 -21.74996 -20.37192 -18.84432 -18.67564 -18.17122 -17.12185 -16.84020 -16.75935 -16.39874 -16.13026 -15.96584 -15.65005 -15.24452 -15.13833 -14.93020 -14.65471 -14.61279 -14.28215 -14.21912 -13.88765 -13.59223 -13.31125 -13.13991 -12.94321 -12.86809 -12.74550 -12.71670 -12.39981 -12.32158 -12.18606 -12.14172 -11.90954 -11.83020 -11.67997 -11.41072 -11.37894 -11.34484 -11.01404 -10.60290 -10.51271 -10.47712 -9.97650 -8.60573 -7.79906 -5.25301 -0.80431 -0.26521 1.51302 1.55128 1.61835 1.65828 1.99125 2.45018 2.56211 2.82635 3.13895 3.28384 3.36952 3.53149 3.60396 3.66372 3.97731 4.02220 4.06284 4.12191 4.21939 4.35095 4.39772 4.44149 4.55050 4.57254 4.64461 4.66923 4.71386 4.76472 4.92400 4.95410 5.00383 5.01914 5.04661 5.05723 5.12376 5.16989 5.21958 5.30715 5.35297 5.39912 5.45878 5.54313 5.60262 5.76574 5.81888 6.45350 6.48138 7.06629 7.21514 7.53304 7.91723 8.44755 9.26679 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.010299 B = 0.004797 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.166091 B = 5835.893684 C = 7770.289305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C 0.063 3.937 4 C -0.071 4.071 5 C -0.136 4.136 6 C 0.562 3.438 7 O -0.547 6.547 8 N -0.685 5.685 9 C 0.145 3.855 10 H 0.089 0.911 11 C -0.116 4.116 12 C -0.127 4.127 13 C 0.179 3.821 14 N -0.595 5.595 15 C -0.247 4.247 16 H 0.083 0.917 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.953 3.047 20 H -0.297 1.297 21 H -0.257 1.257 22 H -0.303 1.303 23 C 0.155 3.845 24 H 0.034 0.966 25 C -0.129 4.129 26 C 0.108 3.892 27 C -0.097 4.097 28 N -0.265 5.265 29 N -0.241 5.241 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.409 0.591 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.060 0.940 41 H -0.006 1.006 42 H 0.056 0.944 43 H 0.245 0.755 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 5.854 -10.129 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.082 4.082 4 C -0.101 4.101 5 C -0.150 4.150 6 C 0.347 3.653 7 O -0.427 6.427 8 N -0.336 5.336 9 C 0.038 3.962 10 H 0.107 0.893 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.053 3.947 14 N -0.319 5.319 15 C -0.377 4.377 16 H 0.100 0.900 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.782 3.218 20 H -0.224 1.224 21 H -0.181 1.181 22 H -0.230 1.230 23 C 0.049 3.951 24 H 0.051 0.949 25 C -0.187 4.187 26 C -0.037 4.037 27 C -0.155 4.155 28 N -0.107 5.107 29 N -0.083 5.083 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.190 0.810 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.012 0.988 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.104 0.896 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.740 6.772 -11.481 15.414 hybrid contribution 0.758 -1.739 1.775 2.598 sum -6.982 5.033 -9.706 12.972 Atomic orbital electron populations 1.21688 0.93245 1.03186 1.01968 1.20641 0.97668 0.87267 1.05394 1.23258 0.94005 0.99618 0.91351 1.22906 0.93604 0.94974 0.98586 1.21147 1.00242 0.95522 0.98056 1.17920 0.80832 0.85147 0.81362 1.90706 1.56238 1.19247 1.76471 1.45859 1.45894 1.18433 1.23385 1.21432 0.88390 0.98083 0.88248 0.89319 1.21730 0.96100 0.96515 1.01097 1.22028 1.00371 0.95502 0.98688 1.20675 0.85272 0.98275 0.90489 1.44389 1.14029 1.00080 1.73450 1.19486 0.89886 0.91265 1.37055 0.89965 1.25726 0.97380 1.01781 0.99354 1.70186 1.16899 1.23384 1.47655 0.85486 0.78859 0.79761 0.77694 1.22432 1.18098 1.22973 1.20861 0.95928 0.85641 0.92705 0.94879 1.21718 0.94920 1.00790 1.01245 1.23332 0.91511 0.99469 0.89420 1.20916 1.02078 0.87229 1.05278 1.73008 1.09992 1.06033 1.21679 1.72670 1.17928 0.97675 1.20067 0.93271 0.92505 0.89988 0.88213 0.87966 0.81006 0.75370 0.92281 0.91252 0.92850 0.92169 0.98769 0.92587 0.94564 0.93379 0.91694 0.92505 0.89318 0.89622 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.78 71.98 0.70 -1.62 16 2 C -0.07 -1.21 6.35 29.85 0.19 -1.02 16 3 C 0.06 1.45 6.25 42.62 0.27 1.72 16 4 C -0.07 -1.64 9.29 22.79 0.21 -1.43 16 5 C -0.14 -3.55 5.92 -19.83 -0.12 -3.67 16 6 C 0.56 15.83 7.71 86.87 0.67 16.50 16 7 O -0.55 -17.15 13.18 -3.78 -0.05 -17.20 16 8 N -0.69 -19.20 3.42 -444.78 -1.52 -20.72 16 9 C 0.14 4.35 2.32 45.07 0.10 4.45 16 10 H 0.09 2.60 7.58 -2.38 -0.02 2.58 16 11 C -0.12 -3.53 5.58 30.62 0.17 -3.36 16 12 C -0.13 -4.28 5.94 30.82 0.18 -4.10 16 13 C 0.18 7.65 5.33 86.51 0.46 8.11 16 14 N -0.60 -24.96 2.64 -674.38 -1.78 -26.74 16 15 C -0.25 -11.32 8.59 84.03 0.72 -10.60 16 16 H 0.08 3.54 6.21 -2.91 -0.02 3.52 16 17 C -0.05 -2.33 4.92 84.86 0.42 -1.91 16 18 N -0.93 -51.05 11.22 21.65 0.24 -50.81 16 19 Si 0.95 40.23 29.59 68.60 2.03 42.25 16 20 H -0.30 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.16 5.40 3.20 44.97 0.14 5.54 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 C -0.13 -4.03 7.73 71.98 0.56 -3.47 16 26 C 0.11 2.90 6.91 42.92 0.30 3.20 16 27 C -0.10 -2.25 8.98 71.24 0.64 -1.61 16 28 N -0.27 -7.69 11.42 -46.94 -0.54 -8.22 16 29 N -0.24 -6.65 11.04 -47.68 -0.53 -7.18 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.03 7.96 -2.38 -0.02 1.01 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.47 7.92 -2.38 -0.02 1.45 16 35 H 0.17 3.41 6.59 -2.91 -0.02 3.39 16 36 H 0.41 11.52 6.00 -92.70 -0.56 10.96 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.79 7.53 -2.39 -0.02 1.77 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.06 2.76 6.09 -2.39 -0.01 2.75 16 43 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 44 H 0.05 1.67 7.61 -2.39 -0.02 1.65 16 45 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.06 1.70 6.40 -2.39 -0.02 1.69 16 47 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.10 2.43 5.92 -2.39 -0.01 2.42 16 Total: -1.00 -58.70 382.31 3.89 -54.81 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.41 Total: 27.09 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.62 Total: 6.72 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -4.12 Total: -113.67 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -58.70 3.89 -54.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993630146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.191 kcal (2) G-P(sol) polarization free energy of solvation -58.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds