Wall clock time and date at job start Tue Mar 31 2020 16:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30788 * 125.72428 * 2 1 4 4 C 1.34421 * 109.31936 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.80258 * 359.97438 * 4 3 2 6 6 N 1.34407 * 125.71994 * 180.02562 * 2 1 3 7 7 C 1.46355 * 128.46865 * 0.16330 * 6 2 1 8 8 C 1.53276 * 108.75699 * 162.63985 * 7 6 2 9 9 H 1.09002 * 109.43052 * 290.73060 * 8 7 6 10 10 C 1.50707 * 109.43602 * 170.82426 * 8 7 6 11 11 O 1.21277 * 119.99887 * 334.86650 * 10 8 7 12 12 N 1.34775 * 120.00154 * 154.86330 * 10 8 7 13 13 C 1.46927 * 120.62794 * 4.69498 * 12 10 8 14 14 C 1.52760 * 109.00897 * 233.58057 * 13 12 10 15 15 C 1.53039 * 109.38553 * 305.59272 * 14 13 12 16 16 C 1.53036 * 109.53709 * 61.23610 * 15 14 13 17 17 H 1.09001 * 109.50024 * 58.58751 * 16 15 14 18 18 N 1.46501 * 109.52638 * 178.66897 * 16 15 14 19 19 C 1.36937 * 119.99937 * 274.85819 * 18 16 15 20 20 H 1.08000 * 120.00455 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99892 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00180 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00009 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47092 * 60.00545 * 23 21 19 25 25 H 1.48503 * 109.47183 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47118 * 300.00539 * 23 21 19 27 27 C 1.46917 * 120.63321 * 184.97577 * 12 10 8 28 28 C 1.53119 * 109.66932 * 50.77622 * 8 7 6 29 29 C 1.50707 * 128.68461 * 180.09944 * 5 4 3 30 30 H 1.09000 * 109.47178 * 90.02618 * 1 2 3 31 31 H 1.09004 * 109.46931 * 210.02766 * 1 2 3 32 32 H 1.08996 * 109.47010 * 330.02616 * 1 2 3 33 33 H 1.08000 * 126.09770 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.54373 * 42.86945 * 7 6 2 35 35 H 1.09011 * 109.60292 * 282.44070 * 7 6 2 36 36 H 1.08995 * 109.59048 * 353.41799 * 13 12 10 37 37 H 1.08999 * 109.58793 * 113.84263 * 13 12 10 38 38 H 1.09000 * 109.56518 * 185.55341 * 14 13 12 39 39 H 1.09011 * 109.38408 * 65.52040 * 14 13 12 40 40 H 1.09003 * 109.45909 * 301.21649 * 15 14 13 41 41 H 1.08996 * 109.46163 * 181.25929 * 15 14 13 42 42 H 0.97003 * 120.00121 * 94.85187 * 18 16 15 43 43 H 0.97002 * 120.00437 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58641 * 246.15920 * 27 12 10 45 45 H 1.09007 * 109.58479 * 6.57913 * 27 12 10 46 46 H 1.08999 * 109.49664 * 50.06638 * 28 8 7 47 47 H 1.09000 * 109.50080 * 170.17101 * 28 8 7 48 48 H 1.08996 * 109.74889 * 44.61286 * 29 5 4 49 49 H 1.09003 * 109.74386 * 283.89490 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5928 -0.6561 0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8930 -2.4994 -0.0044 8 6 3.0925 -3.3501 -0.4365 9 1 3.3038 -3.1702 -1.4905 10 6 2.7730 -4.8085 -0.2310 11 8 1.9490 -5.1382 0.5955 12 7 3.4028 -5.7465 -0.9659 13 6 4.4756 -5.3718 -1.8974 14 6 4.1502 -5.9304 -3.2815 15 6 3.9062 -7.4375 -3.1766 16 6 2.7128 -7.6998 -2.2552 17 1 1.8307 -7.1956 -2.6498 18 7 2.4596 -9.1408 -2.1801 19 6 1.6867 -9.7507 -3.1319 20 1 1.2634 -9.1694 -3.9377 21 6 1.4472 -11.1162 -3.0610 22 7 1.9626 -11.8247 -2.0787 23 14 0.3923 -11.9480 -4.3590 24 1 1.0128 -11.7616 -5.6952 25 1 0.2898 -13.3987 -4.0584 26 1 -0.9647 -11.3450 -4.3549 27 6 3.0257 -7.1621 -0.8553 28 6 4.3187 -2.9747 0.4002 29 6 4.7919 -1.5690 0.0045 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5134 33 1 4.4170 1.3396 0.0011 34 1 1.0709 -2.6436 -0.7054 35 1 1.5781 -2.7931 0.9971 36 1 4.5500 -4.2858 -1.9514 37 1 5.4217 -5.7882 -1.5516 38 1 4.9856 -5.7431 -3.9563 39 1 3.2548 -5.4428 -3.6671 40 1 4.7935 -7.9215 -2.7683 41 1 3.6960 -7.8412 -4.1670 42 1 2.8395 -9.6630 -1.4562 43 1 1.7949 -12.7788 -2.0290 44 1 3.8511 -7.7274 -0.4228 45 1 2.1436 -7.2568 -0.2219 46 1 4.0548 -2.9855 1.4577 47 1 5.1181 -3.6926 0.2167 48 1 5.5259 -1.2107 0.7261 49 1 5.2361 -1.5968 -0.9906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000018049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:52 Heat of formation + Delta-G solvation = 29.871220 kcal Electronic energy + Delta-G solvation = -29143.664860 eV Core-core repulsion = 25299.369674 eV Total energy + Delta-G solvation = -3844.295186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65099 -40.44142 -37.76337 -36.46490 -34.61279 -33.64278 -32.37549 -31.61514 -31.22550 -30.22824 -28.41777 -26.69741 -25.79409 -24.58096 -23.68226 -22.60248 -22.15251 -21.19669 -20.12275 -19.27595 -18.86117 -17.53539 -17.27372 -16.82081 -16.17372 -15.69673 -15.41511 -14.91644 -14.67874 -14.34980 -14.24500 -14.18216 -13.99754 -13.89385 -13.55422 -13.42371 -13.26506 -13.14795 -13.00105 -12.73391 -12.63765 -12.41781 -12.15230 -12.05210 -11.55506 -11.37774 -11.14579 -11.03930 -10.95599 -10.73756 -10.52814 -10.46414 -10.18887 -10.13242 -9.89134 -9.73934 -9.64389 -8.98331 -8.58044 -8.39965 -7.06862 -5.84232 -3.14477 1.80880 2.33061 2.53250 2.91014 2.95518 3.39172 3.44023 3.44776 3.96072 4.08126 4.19085 4.27654 4.43544 4.51996 4.57260 4.77278 4.80469 4.87645 4.94836 5.00880 5.08233 5.17171 5.19779 5.23928 5.31087 5.38342 5.39769 5.43647 5.45698 5.55927 5.57225 5.65298 5.67785 5.69556 5.71387 5.92037 6.03283 6.11721 6.17311 6.27851 6.43123 6.54763 6.55426 6.76496 6.93888 6.98294 7.36251 7.61978 7.89672 8.04702 8.33441 9.44717 9.98999 10.33906 11.38017 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002491 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.371257 B =11238.716711 C =11745.180520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.209 3.791 3 N -0.495 5.495 4 C -0.022 4.022 5 C -0.030 4.030 6 N -0.449 5.449 7 C 0.119 3.881 8 C -0.120 4.120 9 H 0.105 0.895 10 C 0.522 3.478 11 O -0.538 6.538 12 N -0.599 5.599 13 C 0.104 3.896 14 C -0.135 4.135 15 C -0.138 4.138 16 C 0.169 3.831 17 H 0.049 0.951 18 N -0.721 5.721 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.106 3.894 28 C -0.114 4.114 29 C -0.042 4.042 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 22.480 3.143 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.052 4.052 3 N -0.215 5.215 4 C -0.170 4.170 5 C -0.144 4.144 6 N -0.133 5.133 7 C -0.003 4.003 8 C -0.141 4.141 9 H 0.123 0.877 10 C 0.309 3.691 11 O -0.415 6.415 12 N -0.331 5.331 13 C -0.019 4.019 14 C -0.174 4.174 15 C -0.179 4.179 16 C 0.058 3.942 17 H 0.067 0.933 18 N -0.362 5.362 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.017 4.017 28 C -0.153 4.153 29 C -0.080 4.080 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.186 0.814 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.218 0.782 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.110 0.890 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.828 22.867 3.459 23.850 hybrid contribution -0.003 -1.623 -0.678 1.759 sum 5.825 21.244 2.781 22.203 Atomic orbital electron populations 1.20199 0.84930 1.04108 1.03584 1.23127 0.95650 0.81062 1.05400 1.70456 1.01990 1.27997 1.21035 1.21800 0.94839 0.91890 1.08465 1.21115 0.85624 0.95436 1.12242 1.45234 1.06413 1.07105 1.54506 1.21748 0.97042 0.76710 1.04827 1.21584 0.96680 0.92852 1.03022 0.87737 1.20050 0.81128 0.86823 0.81132 1.90727 1.34223 1.82259 1.34314 1.48081 1.36280 1.07973 1.40795 1.21791 0.90148 0.99965 0.89996 1.21874 1.01739 0.98308 0.95436 1.22295 1.00516 0.92804 1.02237 1.20463 0.95209 0.87003 0.91529 0.93270 1.42295 1.60660 1.01425 1.31774 1.19142 1.23310 0.91057 1.03799 0.91218 1.24754 1.00959 0.96456 0.98512 1.69646 1.48826 1.06801 1.32619 0.86261 0.80280 0.78571 0.81017 1.21225 1.21619 1.21202 1.22062 1.01610 0.78367 0.99621 1.21646 0.96137 0.97132 1.00349 1.20212 0.93081 0.91641 1.03063 0.90139 0.90710 0.89160 0.81423 0.88662 0.88027 0.90196 0.91003 0.91145 0.91900 0.92384 0.91454 0.78157 0.93332 0.91480 0.88853 0.90420 0.89741 0.88968 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.24 36.01 0.37 -0.18 16 2 C 0.21 2.35 7.94 -155.75 -1.24 1.11 16 3 N -0.50 -6.36 11.27 -11.02 -0.12 -6.48 16 4 C -0.02 -0.24 11.84 -17.96 -0.21 -0.46 16 5 C -0.03 -0.29 6.57 -81.73 -0.54 -0.83 16 6 N -0.45 -4.68 3.13 -109.51 -0.34 -5.02 16 7 C 0.12 1.16 5.60 -3.98 -0.02 1.14 16 8 C -0.12 -1.11 1.66 -91.56 -0.15 -1.26 16 9 H 0.10 0.85 6.44 -51.93 -0.33 0.52 16 10 C 0.52 6.77 6.78 -10.98 -0.07 6.69 16 11 O -0.54 -9.02 15.34 5.56 0.09 -8.93 16 12 N -0.60 -7.73 2.98 -173.04 -0.52 -8.25 16 13 C 0.10 1.01 5.79 -3.93 -0.02 0.99 16 14 C -0.13 -1.52 6.06 -26.83 -0.16 -1.68 16 15 C -0.14 -2.18 5.47 -26.69 -0.15 -2.33 16 16 C 0.17 3.16 2.92 -67.81 -0.20 2.96 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.32 5.12 -53.31 -0.27 -17.59 16 19 C -0.24 -6.52 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.11 1.74 5.89 -3.72 -0.02 1.72 16 28 C -0.11 -0.87 4.98 -26.41 -0.13 -1.00 16 29 C -0.04 -0.28 6.31 -27.62 -0.17 -0.45 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.09 7.54 -51.92 -0.39 0.69 16 36 H 0.08 0.57 5.21 -51.93 -0.27 0.30 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.75 7.04 -51.93 -0.37 1.39 16 46 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.08 0.56 7.50 -51.93 -0.39 0.17 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -33.34 384.70 -10.58 -43.93 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.94 Total: 7.02 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.97 Total: -0.63 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.53 Total: -64.14 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.34 -10.58 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000018049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.800 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds