Wall clock time and date at job start Tue Mar 31 2020 16:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30788 * 125.72428 * 2 1 4 4 C 1.34421 * 109.31936 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.80258 * 359.97438 * 4 3 2 6 6 N 1.34407 * 125.71994 * 180.02562 * 2 1 3 7 7 C 1.46355 * 128.46865 * 0.16330 * 6 2 1 8 8 C 1.53276 * 108.75699 * 162.63985 * 7 6 2 9 9 H 1.09002 * 109.43052 * 290.73060 * 8 7 6 10 10 C 1.50707 * 109.43602 * 170.82426 * 8 7 6 11 11 O 1.21277 * 119.99887 * 334.86650 * 10 8 7 12 12 N 1.34775 * 120.00154 * 154.86330 * 10 8 7 13 13 C 1.46927 * 120.62794 * 4.69498 * 12 10 8 14 14 C 1.52760 * 109.00897 * 233.58057 * 13 12 10 15 15 C 1.53039 * 109.38553 * 305.59272 * 14 13 12 16 16 C 1.53036 * 109.53709 * 61.23610 * 15 14 13 17 17 H 1.09001 * 109.50024 * 58.58751 * 16 15 14 18 18 N 1.46501 * 109.52638 * 178.66897 * 16 15 14 19 19 C 1.36937 * 119.99937 * 274.85819 * 18 16 15 20 20 H 1.08000 * 120.00455 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99892 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00180 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00009 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47092 * 60.00545 * 23 21 19 25 25 H 1.48503 * 109.47183 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47118 * 300.00539 * 23 21 19 27 27 C 1.46917 * 120.63321 * 184.97577 * 12 10 8 28 28 C 1.53119 * 109.66932 * 50.77622 * 8 7 6 29 29 C 1.50707 * 128.68461 * 180.09944 * 5 4 3 30 30 H 1.09000 * 109.47178 * 90.02618 * 1 2 3 31 31 H 1.09004 * 109.46931 * 210.02766 * 1 2 3 32 32 H 1.08996 * 109.47010 * 330.02616 * 1 2 3 33 33 H 1.08000 * 126.09770 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.54373 * 42.86945 * 7 6 2 35 35 H 1.09011 * 109.60292 * 282.44070 * 7 6 2 36 36 H 1.08995 * 109.59048 * 353.41799 * 13 12 10 37 37 H 1.08999 * 109.58793 * 113.84263 * 13 12 10 38 38 H 1.09000 * 109.56518 * 185.55341 * 14 13 12 39 39 H 1.09011 * 109.38408 * 65.52040 * 14 13 12 40 40 H 1.09003 * 109.45909 * 301.21649 * 15 14 13 41 41 H 1.08996 * 109.46163 * 181.25929 * 15 14 13 42 42 H 0.97003 * 120.00121 * 94.85187 * 18 16 15 43 43 H 0.97002 * 120.00437 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58641 * 246.15920 * 27 12 10 45 45 H 1.09007 * 109.58479 * 6.57913 * 27 12 10 46 46 H 1.08999 * 109.49664 * 50.06638 * 28 8 7 47 47 H 1.09000 * 109.50080 * 170.17101 * 28 8 7 48 48 H 1.08996 * 109.74889 * 44.61286 * 29 5 4 49 49 H 1.09003 * 109.74386 * 283.89490 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5928 -0.6561 0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8930 -2.4994 -0.0044 8 6 3.0925 -3.3501 -0.4365 9 1 3.3038 -3.1702 -1.4905 10 6 2.7730 -4.8085 -0.2310 11 8 1.9490 -5.1382 0.5955 12 7 3.4028 -5.7465 -0.9659 13 6 4.4756 -5.3718 -1.8974 14 6 4.1502 -5.9304 -3.2815 15 6 3.9062 -7.4375 -3.1766 16 6 2.7128 -7.6998 -2.2552 17 1 1.8307 -7.1956 -2.6498 18 7 2.4596 -9.1408 -2.1801 19 6 1.6867 -9.7507 -3.1319 20 1 1.2634 -9.1694 -3.9377 21 6 1.4472 -11.1162 -3.0610 22 7 1.9626 -11.8247 -2.0787 23 14 0.3923 -11.9480 -4.3590 24 1 1.0128 -11.7616 -5.6952 25 1 0.2898 -13.3987 -4.0584 26 1 -0.9647 -11.3450 -4.3549 27 6 3.0257 -7.1621 -0.8553 28 6 4.3187 -2.9747 0.4002 29 6 4.7919 -1.5690 0.0045 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5134 33 1 4.4170 1.3396 0.0011 34 1 1.0709 -2.6436 -0.7054 35 1 1.5781 -2.7931 0.9971 36 1 4.5500 -4.2858 -1.9514 37 1 5.4217 -5.7882 -1.5516 38 1 4.9856 -5.7431 -3.9563 39 1 3.2548 -5.4428 -3.6671 40 1 4.7935 -7.9215 -2.7683 41 1 3.6960 -7.8412 -4.1670 42 1 2.8395 -9.6630 -1.4562 43 1 1.7949 -12.7788 -2.0290 44 1 3.8511 -7.7274 -0.4228 45 1 2.1436 -7.2568 -0.2219 46 1 4.0548 -2.9855 1.4577 47 1 5.1181 -3.6926 0.2167 48 1 5.5259 -1.2107 0.7261 49 1 5.2361 -1.5968 -0.9906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000018049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:51 Heat of formation + Delta-G solvation = 9.260021 kcal Electronic energy + Delta-G solvation = -29144.558629 eV Core-core repulsion = 25299.369674 eV Total energy + Delta-G solvation = -3845.188954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.40696 -41.48948 -38.96465 -37.31447 -36.23630 -34.35972 -33.86891 -32.81372 -32.26154 -30.98832 -29.97066 -27.39329 -26.82903 -26.03746 -24.94536 -23.42645 -23.33872 -22.03208 -21.32831 -20.22114 -19.80101 -19.16562 -18.46913 -17.58158 -17.15537 -16.81195 -16.61036 -16.24773 -15.60338 -15.55799 -15.34942 -15.21291 -14.93524 -14.89130 -14.70331 -14.60114 -14.45474 -13.94325 -13.87083 -13.77446 -13.64868 -13.24065 -12.99858 -12.90048 -12.84487 -12.77900 -12.35716 -12.25714 -12.18921 -12.11076 -11.96424 -11.84307 -11.72811 -11.63552 -10.93736 -10.91642 -10.86148 -10.50490 -9.73621 -9.12154 -9.04778 -7.97312 -5.26772 1.06706 1.38013 1.45629 1.48089 1.54097 1.62890 1.99442 2.13879 2.54594 3.19984 3.28696 3.36114 3.50873 3.60380 3.73815 3.79183 3.88969 4.00509 4.07575 4.11367 4.13698 4.21229 4.27601 4.31190 4.35716 4.41492 4.56586 4.58829 4.62222 4.68053 4.75613 4.81638 4.83949 4.86287 4.92471 5.00152 5.03003 5.05785 5.13323 5.16635 5.39016 5.40045 5.45677 5.48932 5.58464 5.84879 6.22665 6.24311 6.34578 7.01578 7.12546 7.30431 8.03649 8.27111 9.25683 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.002491 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.371257 B =11238.716711 C =11745.180520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.192 3.808 3 N -0.530 5.530 4 C -0.045 4.045 5 C -0.029 4.029 6 N -0.452 5.452 7 C 0.121 3.879 8 C -0.106 4.106 9 H 0.127 0.873 10 C 0.521 3.479 11 O -0.583 6.583 12 N -0.597 5.597 13 C 0.101 3.899 14 C -0.126 4.126 15 C -0.129 4.129 16 C 0.167 3.833 17 H 0.032 0.968 18 N -0.736 5.736 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.281 1.281 27 C 0.120 3.880 28 C -0.111 4.111 29 C -0.034 4.034 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 24.395 1.772 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 N -0.250 5.250 4 C -0.192 4.192 5 C -0.143 4.143 6 N -0.135 5.135 7 C -0.002 4.002 8 C -0.128 4.128 9 H 0.145 0.855 10 C 0.310 3.690 11 O -0.463 6.463 12 N -0.329 5.329 13 C -0.020 4.020 14 C -0.164 4.164 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.050 0.950 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.207 1.207 27 C -0.004 4.004 28 C -0.149 4.149 29 C -0.072 4.072 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.718 24.857 2.053 26.109 hybrid contribution -0.585 -2.132 -0.216 2.221 sum 7.133 22.725 1.837 23.889 Atomic orbital electron populations 1.20289 0.83381 1.04640 1.04403 1.23639 0.96808 0.81110 1.05441 1.70427 1.03244 1.29137 1.22216 1.22219 0.94807 0.92951 1.09212 1.21663 0.86255 0.95698 1.10704 1.45308 1.06810 1.06958 1.54463 1.21688 0.97623 0.76674 1.04186 1.21541 0.97158 0.89413 1.04639 0.85475 1.20708 0.80021 0.88228 0.80084 1.90716 1.36176 1.83150 1.36294 1.48119 1.37038 1.06229 1.41494 1.22114 0.89463 1.02422 0.88022 1.21835 1.03112 0.94199 0.97299 1.22084 0.98529 0.96650 0.99677 1.20636 0.95899 0.84036 0.93623 0.95007 1.42483 1.60532 1.03603 1.30953 1.19489 1.22439 0.91348 1.03871 0.90901 1.25540 1.02954 0.97295 1.00780 1.69800 1.50815 1.06584 1.34630 0.85252 0.78783 0.77016 0.78956 1.20142 1.22164 1.20704 1.21587 1.00511 0.80987 0.97350 1.21669 0.95682 0.98421 0.99117 1.20358 0.91943 0.89804 1.05128 0.89116 0.89958 0.88836 0.79680 0.88307 0.89538 0.86265 0.89135 0.87871 0.91984 0.92456 0.93754 0.79474 0.93965 0.91200 0.91977 0.91955 0.87716 0.87072 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.24 71.24 0.73 -0.31 16 2 C 0.19 4.14 7.94 138.25 1.10 5.24 16 3 N -0.53 -13.21 11.27 -188.77 -2.13 -15.34 16 4 C -0.05 -0.91 11.84 83.30 0.99 0.08 16 5 C -0.03 -0.49 6.57 40.73 0.27 -0.23 16 6 N -0.45 -8.68 3.13 -500.39 -1.57 -10.25 16 7 C 0.12 2.20 5.60 86.50 0.48 2.68 16 8 C -0.11 -1.65 1.66 -11.41 -0.02 -1.67 16 9 H 0.13 1.45 6.44 -2.39 -0.02 1.43 16 10 C 0.52 12.71 6.78 87.66 0.59 13.31 16 11 O -0.58 -19.77 15.34 -3.02 -0.05 -19.81 16 12 N -0.60 -14.22 2.98 -819.76 -2.44 -16.66 16 13 C 0.10 1.51 5.79 86.22 0.50 2.01 16 14 C -0.13 -2.36 6.06 30.53 0.19 -2.18 16 15 C -0.13 -3.91 5.47 30.62 0.17 -3.75 16 16 C 0.17 6.30 2.92 45.07 0.13 6.43 16 17 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 18 N -0.74 -36.31 5.12 -322.58 -1.65 -37.96 16 19 C -0.24 -13.12 9.93 84.03 0.83 -12.29 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 C 0.12 3.95 5.89 86.36 0.51 4.46 16 28 C -0.11 -1.27 4.98 30.80 0.15 -1.12 16 29 C -0.03 -0.30 6.31 30.02 0.19 -0.11 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.08 7.96 -2.38 -0.02 1.06 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.85 7.54 -2.38 -0.02 1.83 16 36 H 0.12 0.93 5.21 -2.39 -0.01 0.92 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 2.44 7.04 -2.38 -0.02 2.42 16 46 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 47 H 0.10 0.84 7.50 -2.39 -0.02 0.82 16 48 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -76.21 384.70 1.98 -74.23 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.23 Total: 27.62 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 7.28 Total: 8.86 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -7.50 Total: -138.64 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.21 1.98 -74.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000018049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.486 kcal (2) G-P(sol) polarization free energy of solvation -76.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds