Wall clock time and date at job start Tue Mar 31 2020 20:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30753 * 125.61286 * 2 1 4 4 C 1.33581 * 109.14480 * 180.02562 * 3 2 1 5 5 C 1.35032 * 107.97635 * 0.06180 * 4 3 2 6 6 N 1.35308 * 125.61648 * 180.02562 * 2 1 3 7 7 H 0.97003 * 126.50205 * 359.92766 * 6 2 1 8 8 C 1.50653 * 124.45027 * 179.83445 * 5 4 3 9 9 C 1.53400 * 108.38614 * 343.59884 * 8 5 4 10 10 H 1.09000 * 109.47794 * 289.65072 * 9 8 5 11 11 C 1.50701 * 109.47823 * 169.63703 * 9 8 5 12 12 O 1.21281 * 119.99617 * 240.02984 * 11 9 8 13 13 N 1.34773 * 119.99978 * 59.74804 * 11 9 8 14 14 C 1.46503 * 119.99935 * 180.27866 * 13 11 9 15 15 H 1.08996 * 109.49464 * 325.00258 * 14 13 11 16 16 C 1.53040 * 109.49709 * 204.93199 * 14 13 11 17 17 C 1.53038 * 109.54075 * 178.71462 * 16 14 13 18 18 C 1.53192 * 109.33590 * 61.31749 * 17 16 14 19 19 N 1.46928 * 108.77905 * 305.38047 * 18 17 16 20 20 C 1.36929 * 120.63427 * 233.63060 * 19 18 17 21 21 H 1.08009 * 119.99831 * 27.66533 * 20 19 18 22 22 C 1.38814 * 120.00176 * 207.66804 * 20 19 18 23 23 N 1.31615 * 119.99884 * 17.36200 * 22 20 19 24 24 Si 1.86799 * 120.00002 * 197.36287 * 22 20 19 25 25 H 1.48500 * 109.47233 * 89.99783 * 24 22 20 26 26 H 1.48499 * 109.47289 * 209.99755 * 24 22 20 27 27 H 1.48503 * 109.47322 * 329.99844 * 24 22 20 28 28 C 1.46931 * 118.73454 * 53.60783 * 19 18 17 29 29 C 1.53123 * 109.44563 * 49.63892 * 9 8 5 30 30 C 1.50862 * 128.03463 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.46976 * 89.97651 * 1 2 3 32 32 H 1.08999 * 109.46982 * 209.97356 * 1 2 3 33 33 H 1.08999 * 109.47121 * 329.97121 * 1 2 3 34 34 H 1.08996 * 109.68290 * 223.87219 * 8 5 4 35 35 H 1.09001 * 109.68117 * 103.32025 * 8 5 4 36 36 H 0.97005 * 119.99953 * 0.27497 * 13 11 9 37 37 H 1.08996 * 109.46330 * 298.70897 * 16 14 13 38 38 H 1.09006 * 109.45959 * 58.66382 * 16 14 13 39 39 H 1.09005 * 109.46660 * 301.36870 * 17 16 14 40 40 H 1.08999 * 109.52645 * 181.30638 * 17 16 14 41 41 H 1.08999 * 109.58701 * 185.59542 * 18 17 16 42 42 H 1.08993 * 109.58531 * 65.17386 * 18 17 16 43 43 H 0.96999 * 119.99983 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.58321 * 186.59837 * 28 19 18 45 45 H 1.09001 * 109.58156 * 66.17906 * 28 19 18 46 46 H 1.09001 * 109.45689 * 50.00576 * 29 9 8 47 47 H 1.09002 * 109.45708 * 169.97749 * 29 9 8 48 48 H 1.09002 * 109.67454 * 43.60280 * 30 4 3 49 49 H 1.08994 * 109.67924 * 283.06411 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2684 1.0630 0.0000 4 6 3.5495 0.6843 -0.0006 5 6 3.5850 -0.6655 -0.0023 6 7 2.2950 -1.1000 -0.0005 7 1 1.9972 -2.0231 0.0001 8 6 4.8493 -1.4848 -0.0070 9 6 6.0135 -0.5755 -0.4204 10 1 5.9196 -0.3221 -1.4764 11 6 7.3183 -1.2936 -0.1901 12 8 8.1415 -0.8270 0.5686 13 7 7.5680 -2.4570 -0.8229 14 6 8.8338 -3.1582 -0.5943 15 1 9.6325 -2.4301 -0.4527 16 6 9.1548 -4.0400 -1.8033 17 6 10.4928 -4.7483 -1.5793 18 6 10.3917 -5.6435 -0.3403 19 7 9.9428 -4.8284 0.7968 20 6 10.6562 -4.8078 1.9653 21 1 11.7205 -4.9914 1.9515 22 6 10.0117 -4.5512 3.1677 23 7 8.7031 -4.6651 3.2502 24 14 11.0016 -4.0441 4.6684 25 1 11.1240 -2.5646 4.7039 26 1 10.3129 -4.5134 5.8975 27 1 12.3550 -4.6512 4.5970 28 6 8.7139 -4.0353 0.6558 29 6 5.9814 0.7062 0.4168 30 6 4.7777 1.5603 -0.0003 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 4.7530 -2.3044 -0.7190 35 1 5.0318 -1.8841 0.9907 36 1 6.9095 -2.8301 -1.4296 37 1 8.3677 -4.7833 -1.9298 38 1 9.2165 -3.4208 -2.6983 39 1 11.2763 -4.0056 -1.4287 40 1 10.7323 -5.3583 -2.4503 41 1 11.3689 -6.0727 -0.1189 42 1 9.6728 -6.4419 -0.5240 43 1 8.2526 -4.4854 4.0903 44 1 8.5840 -3.4036 1.5345 45 1 7.8582 -4.7027 0.5533 46 1 5.8962 0.4483 1.4725 47 1 6.9001 1.2696 0.2536 48 1 4.6451 2.3780 0.7082 49 1 4.9416 1.9630 -0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007706901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:59 Heat of formation + Delta-G solvation = 20.360225 kcal Electronic energy + Delta-G solvation = -29207.768335 eV Core-core repulsion = 25363.060722 eV Total energy + Delta-G solvation = -3844.707613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.45080 -39.73859 -37.56186 -36.09142 -34.14715 -33.29225 -32.65913 -31.46877 -30.29503 -29.93102 -28.72637 -27.42138 -25.27371 -23.49752 -23.07581 -22.17903 -21.54282 -20.96492 -19.98679 -19.39051 -18.87785 -17.61878 -16.78748 -16.62324 -15.73382 -15.53270 -15.18453 -14.80555 -14.10738 -13.98506 -13.89565 -13.85173 -13.69742 -13.53376 -13.43556 -13.09690 -12.94341 -12.71295 -12.64466 -12.34907 -12.28865 -11.95707 -11.82802 -11.46443 -11.05953 -11.01754 -10.90309 -10.74713 -10.72530 -10.48917 -10.24191 -9.99855 -9.96569 -9.94241 -9.92097 -9.53092 -9.27493 -8.52770 -8.42903 -8.13008 -6.66532 -5.76090 -3.19053 1.85994 2.78698 2.94670 3.11327 3.43216 3.49978 3.51344 3.54191 4.14932 4.52910 4.56119 4.68012 4.78019 4.87701 5.03257 5.08323 5.20160 5.25319 5.34695 5.35581 5.40130 5.43792 5.52412 5.53367 5.57722 5.62548 5.68826 5.71332 5.89163 5.98958 6.06928 6.08676 6.13410 6.23527 6.32229 6.35077 6.41033 6.49758 6.67898 6.69144 6.76653 6.93812 6.96238 7.23722 7.29375 7.71760 7.82827 7.94257 7.97999 8.47593 8.66820 9.22884 9.86842 10.41424 11.31838 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.003048 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.558614 B = 9183.444096 C = 9943.359529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.195 3.805 3 N -0.482 5.482 4 C 0.007 3.993 5 C -0.020 4.020 6 N -0.557 5.557 7 H 0.418 0.582 8 C -0.034 4.034 9 C -0.097 4.097 10 H 0.098 0.902 11 C 0.514 3.486 12 O -0.526 6.526 13 N -0.721 5.721 14 C 0.116 3.884 15 H 0.082 0.918 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.142 3.858 19 N -0.589 5.589 20 C -0.256 4.256 21 H 0.066 0.934 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.902 3.098 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.168 3.832 29 C -0.100 4.100 30 C -0.032 4.032 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.390 0.610 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.095 0.905 45 H 0.015 0.985 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 6.070 -12.103 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 N -0.202 5.202 4 C -0.123 4.123 5 C -0.136 4.136 6 N -0.160 5.160 7 H 0.256 0.744 8 C -0.072 4.072 9 C -0.119 4.119 10 H 0.116 0.884 11 C 0.299 3.701 12 O -0.402 6.402 13 N -0.371 5.371 14 C 0.011 3.989 15 H 0.100 0.900 16 C -0.154 4.154 17 C -0.171 4.171 18 C 0.016 3.984 19 N -0.312 5.312 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.732 3.268 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.041 3.959 29 C -0.138 4.138 30 C -0.071 4.071 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.223 0.777 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.033 0.967 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.851 7.261 -11.371 19.336 hybrid contribution 0.070 -1.368 0.454 1.443 sum -13.781 5.893 -10.917 18.543 Atomic orbital electron populations 1.20145 0.84862 1.03984 1.03366 1.23284 0.95408 0.81412 1.06678 1.69924 1.01771 1.28580 1.19913 1.20568 0.92812 0.91202 1.07689 1.20850 0.85506 0.95611 1.11671 1.42778 1.06149 1.09972 1.57094 0.74387 1.20020 0.87807 0.95969 1.03444 1.21304 0.91985 0.96305 1.02330 0.88433 1.20343 0.88229 0.81096 0.80460 1.90753 1.47886 1.66251 1.35271 1.46109 1.20772 1.23155 1.47113 1.21968 0.84790 0.94668 0.97511 0.90032 1.21671 0.98529 0.98382 0.96792 1.22004 0.96408 0.99625 0.99080 1.20953 0.97996 0.92018 0.87437 1.43976 1.27621 1.48648 1.10925 1.19158 0.90688 1.44884 0.83798 0.91594 1.25017 0.95663 1.01084 0.97481 1.70013 1.07486 1.51334 1.25520 0.86300 0.79351 0.78855 0.82325 1.21195 1.21803 1.20432 1.21079 0.87668 0.92311 0.94838 1.21447 0.98041 0.94088 1.00213 1.19979 0.88612 0.96309 1.02169 0.90324 0.90905 0.89202 0.90336 0.89265 0.77672 0.92382 0.93132 0.92112 0.92672 0.92634 0.96468 0.93725 0.88708 0.96692 0.90758 0.89788 0.90149 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.19 2.10 8.16 -154.96 -1.26 0.83 16 3 N -0.48 -6.63 11.25 -6.94 -0.08 -6.70 16 4 C 0.01 0.09 6.98 -82.89 -0.58 -0.48 16 5 C -0.02 -0.24 7.08 -81.85 -0.58 -0.82 16 6 N -0.56 -5.45 6.14 -6.53 -0.04 -5.49 16 7 H 0.42 2.76 8.96 -40.82 -0.37 2.39 16 8 C -0.03 -0.38 5.42 -27.70 -0.15 -0.53 16 9 C -0.10 -1.20 2.51 -91.50 -0.23 -1.43 16 10 H 0.10 1.01 8.12 -51.93 -0.42 0.58 16 11 C 0.51 8.46 7.10 -10.99 -0.08 8.38 16 12 O -0.53 -11.30 15.48 5.56 0.09 -11.21 16 13 N -0.72 -11.06 4.98 -53.69 -0.27 -11.33 16 14 C 0.12 2.20 2.60 -67.81 -0.18 2.02 16 15 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 16 C -0.12 -1.81 5.36 -26.69 -0.14 -1.95 16 17 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 18 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16 19 N -0.59 -14.84 2.99 -172.32 -0.52 -15.35 16 20 C -0.26 -7.16 9.58 -15.06 -0.14 -7.30 16 21 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 22 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 23 N -0.90 -26.60 11.19 55.49 0.62 -25.98 16 24 Si 0.90 22.54 29.59 -169.99 -5.03 17.51 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.17 4.01 4.89 -3.71 -0.02 4.00 16 29 C -0.10 -1.28 4.64 -26.47 -0.12 -1.40 16 30 C -0.03 -0.38 6.30 -27.61 -0.17 -0.55 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 35 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 36 H 0.39 4.59 8.27 -40.82 -0.34 4.26 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 44 H 0.09 2.69 6.03 -51.93 -0.31 2.37 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 47 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -35.50 386.12 -11.06 -46.55 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.10 Total: 4.84 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -3.55 Total: 1.36 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.28 Total: -64.87 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.50 -11.06 -46.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007706901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.913 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds