Wall clock time and date at job start Tue Mar 31 2020 20:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30753 * 125.61286 * 2 1 4 4 C 1.33581 * 109.14480 * 180.02562 * 3 2 1 5 5 C 1.35032 * 107.97635 * 0.06180 * 4 3 2 6 6 N 1.35308 * 125.61648 * 180.02562 * 2 1 3 7 7 H 0.97003 * 126.50205 * 359.92766 * 6 2 1 8 8 C 1.50653 * 124.45027 * 179.83445 * 5 4 3 9 9 C 1.53400 * 108.38614 * 343.59884 * 8 5 4 10 10 H 1.09000 * 109.47794 * 289.65072 * 9 8 5 11 11 C 1.50701 * 109.47823 * 169.63703 * 9 8 5 12 12 O 1.21281 * 119.99617 * 240.02984 * 11 9 8 13 13 N 1.34773 * 119.99978 * 59.74804 * 11 9 8 14 14 C 1.46503 * 119.99935 * 180.27866 * 13 11 9 15 15 H 1.08996 * 109.49464 * 325.00258 * 14 13 11 16 16 C 1.53040 * 109.49709 * 204.93199 * 14 13 11 17 17 C 1.53038 * 109.54075 * 178.71462 * 16 14 13 18 18 C 1.53192 * 109.33590 * 61.31749 * 17 16 14 19 19 N 1.46928 * 108.77905 * 305.38047 * 18 17 16 20 20 C 1.36929 * 120.63427 * 233.63060 * 19 18 17 21 21 H 1.08009 * 119.99831 * 27.66533 * 20 19 18 22 22 C 1.38814 * 120.00176 * 207.66804 * 20 19 18 23 23 N 1.31615 * 119.99884 * 17.36200 * 22 20 19 24 24 Si 1.86799 * 120.00002 * 197.36287 * 22 20 19 25 25 H 1.48500 * 109.47233 * 89.99783 * 24 22 20 26 26 H 1.48499 * 109.47289 * 209.99755 * 24 22 20 27 27 H 1.48503 * 109.47322 * 329.99844 * 24 22 20 28 28 C 1.46931 * 118.73454 * 53.60783 * 19 18 17 29 29 C 1.53123 * 109.44563 * 49.63892 * 9 8 5 30 30 C 1.50862 * 128.03463 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.46976 * 89.97651 * 1 2 3 32 32 H 1.08999 * 109.46982 * 209.97356 * 1 2 3 33 33 H 1.08999 * 109.47121 * 329.97121 * 1 2 3 34 34 H 1.08996 * 109.68290 * 223.87219 * 8 5 4 35 35 H 1.09001 * 109.68117 * 103.32025 * 8 5 4 36 36 H 0.97005 * 119.99953 * 0.27497 * 13 11 9 37 37 H 1.08996 * 109.46330 * 298.70897 * 16 14 13 38 38 H 1.09006 * 109.45959 * 58.66382 * 16 14 13 39 39 H 1.09005 * 109.46660 * 301.36870 * 17 16 14 40 40 H 1.08999 * 109.52645 * 181.30638 * 17 16 14 41 41 H 1.08999 * 109.58701 * 185.59542 * 18 17 16 42 42 H 1.08993 * 109.58531 * 65.17386 * 18 17 16 43 43 H 0.96999 * 119.99983 * 180.02562 * 23 22 20 44 44 H 1.08996 * 109.58321 * 186.59837 * 28 19 18 45 45 H 1.09001 * 109.58156 * 66.17906 * 28 19 18 46 46 H 1.09001 * 109.45689 * 50.00576 * 29 9 8 47 47 H 1.09002 * 109.45708 * 169.97749 * 29 9 8 48 48 H 1.09002 * 109.67454 * 43.60280 * 30 4 3 49 49 H 1.08994 * 109.67924 * 283.06411 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2684 1.0630 0.0000 4 6 3.5495 0.6843 -0.0006 5 6 3.5850 -0.6655 -0.0023 6 7 2.2950 -1.1000 -0.0005 7 1 1.9972 -2.0231 0.0001 8 6 4.8493 -1.4848 -0.0070 9 6 6.0135 -0.5755 -0.4204 10 1 5.9196 -0.3221 -1.4764 11 6 7.3183 -1.2936 -0.1901 12 8 8.1415 -0.8270 0.5686 13 7 7.5680 -2.4570 -0.8229 14 6 8.8338 -3.1582 -0.5943 15 1 9.6325 -2.4301 -0.4527 16 6 9.1548 -4.0400 -1.8033 17 6 10.4928 -4.7483 -1.5793 18 6 10.3917 -5.6435 -0.3403 19 7 9.9428 -4.8284 0.7968 20 6 10.6562 -4.8078 1.9653 21 1 11.7205 -4.9914 1.9515 22 6 10.0117 -4.5512 3.1677 23 7 8.7031 -4.6651 3.2502 24 14 11.0016 -4.0441 4.6684 25 1 11.1240 -2.5646 4.7039 26 1 10.3129 -4.5134 5.8975 27 1 12.3550 -4.6512 4.5970 28 6 8.7139 -4.0353 0.6558 29 6 5.9814 0.7062 0.4168 30 6 4.7777 1.5603 -0.0003 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 4.7530 -2.3044 -0.7190 35 1 5.0318 -1.8841 0.9907 36 1 6.9095 -2.8301 -1.4296 37 1 8.3677 -4.7833 -1.9298 38 1 9.2165 -3.4208 -2.6983 39 1 11.2763 -4.0056 -1.4287 40 1 10.7323 -5.3583 -2.4503 41 1 11.3689 -6.0727 -0.1189 42 1 9.6728 -6.4419 -0.5240 43 1 8.2526 -4.4854 4.0903 44 1 8.5840 -3.4036 1.5345 45 1 7.8582 -4.7027 0.5533 46 1 5.8962 0.4483 1.4725 47 1 6.9001 1.2696 0.2536 48 1 4.6451 2.3780 0.7082 49 1 4.9416 1.9630 -0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007706901.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:53 Heat of formation + Delta-G solvation = -3.817437 kcal Electronic energy + Delta-G solvation = -29208.816758 eV Core-core repulsion = 25363.060722 eV Total energy + Delta-G solvation = -3845.756035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 6.49 seconds Orbital eigenvalues (eV) -43.31681 -41.10754 -39.11235 -37.24418 -35.80802 -34.49771 -34.11046 -32.24808 -31.90796 -31.25102 -30.09895 -28.34825 -27.23914 -24.67558 -24.08288 -23.89577 -22.94159 -21.78862 -21.36355 -20.86281 -19.92886 -18.77021 -18.55424 -17.79423 -17.17828 -16.71733 -16.59431 -16.21037 -15.79475 -15.36001 -15.09522 -15.06725 -14.89087 -14.70891 -14.54546 -14.36695 -14.14888 -14.00622 -13.74312 -13.53812 -13.44688 -13.25775 -12.94512 -12.73597 -12.70860 -12.52954 -12.46144 -12.23867 -12.05785 -12.04517 -11.93991 -11.68188 -11.58188 -11.25089 -10.92270 -10.81298 -10.68365 -10.56904 -10.04612 -9.01166 -8.69559 -7.90410 -5.35367 1.00683 1.39239 1.45128 1.50228 1.63960 2.04671 2.14242 2.25708 2.48472 3.25518 3.33989 3.58530 3.71536 3.74119 3.83508 3.98531 4.11966 4.12729 4.16066 4.18680 4.27316 4.37373 4.50081 4.50505 4.55319 4.60918 4.65698 4.75775 4.77952 4.83129 4.91640 4.93884 5.04172 5.09839 5.11364 5.17101 5.20919 5.24797 5.27545 5.31901 5.35782 5.50321 5.54110 5.61823 5.77934 5.80426 6.35679 6.53849 6.67391 7.11565 7.11903 7.38872 7.85136 8.33231 9.13833 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.003048 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.558614 B = 9183.444096 C = 9943.359529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.199 3.801 3 N -0.522 5.522 4 C -0.017 4.017 5 C -0.027 4.027 6 N -0.548 5.548 7 H 0.434 0.566 8 C -0.026 4.026 9 C -0.084 4.084 10 H 0.131 0.869 11 C 0.512 3.488 12 O -0.583 6.583 13 N -0.706 5.706 14 C 0.130 3.870 15 H 0.048 0.952 16 C -0.106 4.106 17 C -0.123 4.123 18 C 0.135 3.865 19 N -0.611 5.611 20 C -0.263 4.263 21 H 0.067 0.933 22 C -0.049 4.049 23 N -0.928 5.928 24 Si 0.958 3.042 25 H -0.295 1.295 26 H -0.291 1.291 27 H -0.262 1.262 28 C 0.180 3.820 29 C -0.095 4.095 30 C -0.024 4.024 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.246 0.754 44 H 0.042 0.958 45 H 0.001 0.999 46 H 0.047 0.953 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 5.353 -14.976 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 N -0.242 5.242 4 C -0.146 4.146 5 C -0.144 4.144 6 N -0.152 5.152 7 H 0.275 0.725 8 C -0.064 4.064 9 C -0.105 4.105 10 H 0.149 0.851 11 C 0.299 3.701 12 O -0.463 6.463 13 N -0.358 5.358 14 C 0.024 3.976 15 H 0.067 0.933 16 C -0.144 4.144 17 C -0.162 4.162 18 C 0.010 3.990 19 N -0.335 5.335 20 C -0.393 4.393 21 H 0.084 0.916 22 C -0.245 4.245 23 N -0.574 5.574 24 Si 0.787 3.213 25 H -0.223 1.223 26 H -0.218 1.218 27 H -0.187 1.187 28 C 0.053 3.947 29 C -0.133 4.133 30 C -0.062 4.062 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.061 6.494 -14.304 21.763 hybrid contribution 0.408 -1.175 1.344 1.831 sum -14.653 5.319 -12.960 20.273 Atomic orbital electron populations 1.20335 0.81907 1.05138 1.04817 1.24072 0.96956 0.80947 1.04452 1.69913 1.02226 1.30271 1.21831 1.20820 0.93180 0.92050 1.08582 1.20781 0.86314 0.95225 1.12094 1.42749 1.05276 1.10804 1.56361 0.72536 1.19922 0.87250 0.96402 1.02867 1.21243 0.89771 0.95457 1.04046 0.85098 1.21093 0.88916 0.81032 0.79100 1.90734 1.50067 1.67764 1.37696 1.45894 1.20234 1.22573 1.47056 1.21482 0.85386 0.93651 0.97129 0.93325 1.21637 0.98423 0.98428 0.95933 1.21906 0.96758 0.99159 0.98375 1.21178 0.97733 0.92516 0.87542 1.44270 1.27656 1.50068 1.11493 1.19486 0.91088 1.43649 0.85102 0.91559 1.25733 0.96597 1.02032 1.00119 1.70155 1.08759 1.52899 1.25572 0.85394 0.78899 0.77651 0.79360 1.22289 1.21763 1.18655 1.20787 0.86944 0.91707 0.95246 1.21354 0.98427 0.94722 0.98832 1.19902 0.87664 0.95779 1.02898 0.88604 0.88504 0.89287 0.87379 0.91751 0.74976 0.90589 0.89547 0.93188 0.88500 0.92838 0.95949 0.94481 0.93919 0.98091 0.93456 0.90500 0.90476 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.20 3.92 8.16 137.97 1.13 5.05 16 3 N -0.52 -13.88 11.25 -175.88 -1.98 -15.86 16 4 C -0.02 -0.44 6.98 41.61 0.29 -0.15 16 5 C -0.03 -0.61 7.08 41.14 0.29 -0.32 16 6 N -0.55 -9.64 6.14 -174.57 -1.07 -10.71 16 7 H 0.43 4.62 8.96 -92.71 -0.83 3.79 16 8 C -0.03 -0.56 5.42 29.97 0.16 -0.39 16 9 C -0.08 -1.99 2.51 -11.36 -0.03 -2.02 16 10 H 0.13 2.32 8.12 -2.39 -0.02 2.30 16 11 C 0.51 16.97 7.10 87.66 0.62 17.60 16 12 O -0.58 -26.37 15.48 -3.03 -0.05 -26.42 16 13 N -0.71 -20.87 4.98 -442.17 -2.20 -23.08 16 14 C 0.13 4.87 2.60 45.07 0.12 4.99 16 15 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 16 C -0.11 -2.96 5.36 30.62 0.16 -2.80 16 17 C -0.12 -3.72 6.08 30.67 0.19 -3.53 16 18 C 0.14 5.39 6.52 86.36 0.56 5.96 16 19 N -0.61 -31.29 2.99 -699.09 -2.09 -33.38 16 20 C -0.26 -15.08 9.58 84.04 0.81 -14.27 16 21 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 22 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 23 N -0.93 -57.26 11.19 21.65 0.24 -57.02 16 24 Si 0.96 47.83 29.59 68.60 2.03 49.86 16 25 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.18 8.85 4.89 86.36 0.42 9.27 16 29 C -0.09 -2.51 4.64 30.76 0.14 -2.37 16 30 C -0.02 -0.57 6.30 30.02 0.19 -0.38 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.67 7.89 -2.39 -0.02 1.65 16 35 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 36 H 0.41 8.47 8.27 -92.70 -0.77 7.70 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 44 H 0.04 2.55 6.03 -2.39 -0.01 2.53 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.04 16 46 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 47 H 0.08 2.12 7.77 -2.39 -0.02 2.10 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -82.95 386.12 0.47 -82.49 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.63 Total: 19.87 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.22 Total: 14.25 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -7.11 Total: -140.05 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -82.95 0.47 -82.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007706901.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.670 kcal (2) G-P(sol) polarization free energy of solvation -82.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.49 seconds