Wall clock time and date at job start Tue Mar 31 2020 21:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47385 * 2 1 4 4 N 1.31931 * 120.17477 * 274.68106 * 3 2 1 5 5 N 1.28277 * 122.32686 * 180.02562 * 4 3 2 6 6 C 1.31916 * 122.51661 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.01144 * 180.02562 * 6 5 4 8 8 C 1.38504 * 119.97059 * 359.72511 * 6 5 4 9 9 C 1.39728 * 120.17228 * 94.70033 * 3 2 1 10 10 C 1.48134 * 121.14705 * 359.97438 * 9 3 2 11 11 O 1.21517 * 119.99591 * 54.06078 * 10 9 3 12 12 N 1.34771 * 119.99957 * 234.06079 * 10 9 3 13 13 C 1.46922 * 120.63432 * 355.85369 * 12 10 9 14 14 C 1.53192 * 108.77574 * 126.39362 * 13 12 10 15 15 C 1.53030 * 109.31668 * 54.63689 * 14 13 12 16 16 C 1.53051 * 109.53752 * 298.63512 * 15 14 13 17 17 H 1.09000 * 109.49076 * 301.38368 * 16 15 14 18 18 N 1.46491 * 109.49758 * 181.31838 * 16 15 14 19 19 C 1.46504 * 120.00207 * 300.27032 * 18 16 15 20 20 C 1.36940 * 120.00384 * 120.00280 * 18 16 15 21 21 H 1.08002 * 119.99435 * 329.14431 * 20 18 16 22 22 C 1.38807 * 120.00498 * 149.14006 * 20 18 16 23 23 N 1.31620 * 119.99843 * 2.70058 * 22 20 18 24 24 Si 1.86802 * 120.00011 * 182.69380 * 22 20 18 25 25 H 1.48503 * 109.46903 * 90.00627 * 24 22 20 26 26 H 1.48501 * 109.47073 * 210.00193 * 24 22 20 27 27 H 1.48496 * 109.47265 * 330.00588 * 24 22 20 28 28 C 1.46933 * 120.62770 * 175.85056 * 12 10 9 29 29 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46761 * 299.99882 * 1 2 3 31 31 H 1.09000 * 109.46673 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47182 * 239.99869 * 2 1 3 33 33 H 1.08996 * 109.47560 * 120.00082 * 2 1 3 34 34 H 1.08998 * 109.47173 * 90.00955 * 7 6 5 35 35 H 1.09007 * 109.46887 * 210.00048 * 7 6 5 36 36 H 1.09003 * 109.47723 * 330.00036 * 7 6 5 37 37 H 1.07993 * 121.09052 * 180.30264 * 8 6 5 38 38 H 1.08998 * 109.58560 * 6.60144 * 13 12 10 39 39 H 1.09000 * 109.58722 * 246.18002 * 13 12 10 40 40 H 1.09000 * 109.49870 * 294.67964 * 14 13 12 41 41 H 1.09008 * 109.49646 * 174.58987 * 14 13 12 42 42 H 1.08993 * 109.46419 * 178.61612 * 15 14 13 43 43 H 1.08998 * 109.46362 * 58.65142 * 15 14 13 44 44 H 1.08998 * 109.46978 * 273.85658 * 19 18 16 45 45 H 1.09000 * 109.46774 * 33.85334 * 19 18 16 46 46 H 1.08994 * 109.47080 * 153.85085 * 19 18 16 47 47 H 0.96999 * 119.99505 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58304 * 113.81851 * 28 12 10 49 49 H 1.09000 * 109.58618 * 353.39729 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1657 2.0770 -1.1367 5 7 2.5898 3.2867 -1.1848 6 6 2.9235 3.9646 -0.1035 7 6 3.4148 5.3840 -0.2254 8 6 2.8161 3.3734 1.1444 9 6 2.3598 2.0499 1.2039 10 6 2.2227 1.3443 2.4992 11 8 2.7633 0.2687 2.6653 12 7 1.4984 1.8952 3.4933 13 6 0.9144 3.2347 3.3404 14 6 -0.5867 3.1548 3.6354 15 6 -0.7985 2.5308 5.0166 16 6 -0.2274 1.1109 5.0298 17 1 -0.7183 0.5142 4.2609 18 7 -0.4587 0.5030 6.3424 19 6 0.0988 1.1248 7.5461 20 6 -1.2007 -0.6434 6.4450 21 1 -1.9964 -0.8364 5.7407 22 6 -0.9301 -1.5573 7.4541 23 7 0.0040 -1.2975 8.3442 24 14 -1.8919 -3.1559 7.5489 25 1 -1.1949 -4.2006 6.7564 26 1 -1.9893 -3.5917 8.9652 27 1 -3.2559 -2.9462 7.0005 28 6 1.2777 1.1676 4.7506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.5677 6.0677 -0.1707 35 1 4.1085 5.5995 0.5874 36 1 3.9237 5.5116 -1.1809 37 1 3.0797 3.9132 2.0418 38 1 1.0681 3.5860 2.3201 39 1 1.3884 3.9221 4.0410 40 1 -1.0738 2.5390 2.8794 41 1 -1.0144 4.1573 3.6196 42 1 -1.8649 2.4953 5.2394 43 1 -0.2904 3.1335 5.7693 44 1 1.1188 0.7717 7.6983 45 1 0.1035 2.2082 7.4265 46 1 -0.5109 0.8571 8.4090 47 1 0.1928 -1.9360 9.0496 48 1 1.7814 1.6864 5.5662 49 1 1.6711 0.1551 4.6607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027470820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:24 Heat of formation + Delta-G solvation = 41.895787 kcal Electronic energy + Delta-G solvation = -29925.559546 eV Core-core repulsion = 26081.785785 eV Total energy + Delta-G solvation = -3843.773761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 14.77 seconds Orbital eigenvalues (eV) -41.66862 -39.83516 -37.63682 -35.43703 -35.14561 -33.93105 -32.54627 -31.70522 -31.34395 -28.92119 -28.18162 -26.21679 -26.04624 -25.03897 -24.10645 -23.38122 -22.06847 -21.77780 -20.04081 -18.86457 -17.97363 -17.37311 -16.82260 -16.35234 -15.93754 -15.47264 -15.15450 -14.72987 -14.55542 -14.38588 -14.11047 -13.89345 -13.83614 -13.62303 -13.42389 -13.39675 -12.83080 -12.72933 -12.66345 -12.48433 -12.42110 -11.97491 -11.94376 -11.34724 -11.18487 -11.13923 -10.98593 -10.86650 -10.78327 -10.50076 -10.45173 -10.40264 -10.26810 -10.18382 -9.97975 -9.81757 -9.70763 -9.54903 -8.63297 -8.47407 -6.72316 -5.83055 -3.33684 0.24991 0.58492 2.48670 2.87598 3.24330 3.35559 3.42103 3.42356 3.65548 4.01058 4.09509 4.23552 4.42440 4.51030 4.73246 4.77473 4.95913 4.99026 5.10393 5.16161 5.17014 5.21331 5.31295 5.33767 5.37844 5.43236 5.46580 5.61191 5.63865 5.66089 5.79588 5.87025 5.88418 5.91294 6.00914 6.07526 6.13023 6.19332 6.27251 6.39055 6.51611 6.72802 6.85049 6.88216 7.34958 7.38520 7.67710 7.76398 8.05214 8.39626 8.45549 9.18717 9.77446 10.29908 11.23030 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.003375 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.255701 B = 8295.353792 C = 9081.360295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C 0.113 3.887 4 N -0.235 5.235 5 N -0.232 5.232 6 C 0.058 3.942 7 C -0.099 4.099 8 C -0.090 4.090 9 C -0.109 4.109 10 C 0.559 3.441 11 O -0.519 6.519 12 N -0.592 5.592 13 C 0.098 3.902 14 C -0.130 4.130 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.065 0.935 18 N -0.590 5.590 19 C 0.161 3.839 20 C -0.262 4.262 21 H 0.066 0.934 22 C 0.013 3.987 23 N -0.903 5.903 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.098 3.902 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.016 0.984 45 H -0.007 1.007 46 H 0.061 0.939 47 H 0.254 0.746 48 H 0.066 0.934 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 14.024 -13.774 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.032 4.032 4 N -0.077 5.077 5 N -0.075 5.075 6 C -0.086 4.086 7 C -0.157 4.157 8 C -0.119 4.119 9 C -0.124 4.124 10 C 0.344 3.656 11 O -0.396 6.396 12 N -0.324 5.324 13 C -0.025 4.025 14 C -0.169 4.169 15 C -0.174 4.174 16 C 0.059 3.941 17 H 0.084 0.916 18 N -0.312 5.312 19 C 0.016 3.984 20 C -0.392 4.392 21 H 0.084 0.916 22 C -0.187 4.187 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.025 4.025 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.173 0.827 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.011 0.989 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.021 13.306 -15.110 20.531 hybrid contribution -0.205 -0.748 1.779 1.941 sum 3.817 12.558 -13.331 18.707 Atomic orbital electron populations 1.21689 0.93329 1.02957 1.02087 1.20746 0.97126 0.89042 1.05742 1.22995 0.93134 0.98531 0.88535 1.73017 1.09498 1.01339 1.23823 1.72823 1.06549 1.01103 1.27020 1.22827 0.96810 0.98993 0.89949 1.20684 1.01862 0.88863 1.04326 1.22502 0.96204 0.93429 0.99794 1.21192 1.00176 0.94930 0.96081 1.17945 0.79755 0.85204 0.82664 1.90811 1.46683 1.20970 1.81107 1.48272 1.50178 1.17776 1.16196 1.21996 0.94942 0.83846 1.01687 1.21899 0.94559 1.01280 0.99186 1.22090 1.01937 0.98498 0.94841 1.20659 0.91272 0.92291 0.89843 0.91639 1.43830 1.60386 1.27633 0.99319 1.20834 0.97905 0.90093 0.89543 1.19158 1.10032 0.95725 1.14279 0.91615 1.25272 0.97154 0.97676 0.98563 1.70024 1.33078 1.35373 1.16137 0.86284 0.79434 0.84062 0.76949 1.21156 1.21623 1.20414 1.22677 1.00030 0.97713 0.82054 0.91119 0.92592 0.92264 0.89185 0.87679 0.89651 0.90140 0.89761 0.82695 0.90500 0.90845 0.91749 0.91070 0.91556 0.92095 0.96539 0.98908 0.92050 0.93521 0.91572 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.90 37.16 0.37 -1.31 16 2 C -0.09 -1.13 5.97 -27.88 -0.17 -1.30 16 3 C 0.11 1.54 6.16 -81.99 -0.51 1.03 16 4 N -0.24 -3.32 11.42 33.81 0.39 -2.93 16 5 N -0.23 -3.00 11.41 33.57 0.38 -2.62 16 6 C 0.06 0.59 6.86 -82.46 -0.57 0.02 16 7 C -0.10 -0.59 10.19 36.00 0.37 -0.22 16 8 C -0.09 -0.92 7.31 -38.78 -0.28 -1.20 16 9 C -0.11 -1.44 4.92 -104.57 -0.51 -1.95 16 10 C 0.56 8.70 6.67 -12.20 -0.08 8.62 16 11 O -0.52 -9.96 14.62 5.35 0.08 -9.88 16 12 N -0.59 -8.67 2.97 -173.78 -0.52 -9.19 16 13 C 0.10 1.08 5.60 -3.71 -0.02 1.06 16 14 C -0.13 -1.53 6.08 -26.62 -0.16 -1.69 16 15 C -0.13 -2.06 5.10 -26.69 -0.14 -2.20 16 16 C 0.17 3.25 2.75 -67.81 -0.19 3.06 16 17 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 18 N -0.59 -14.05 2.81 -173.35 -0.49 -14.54 16 19 C 0.16 3.76 7.97 59.85 0.48 4.23 16 20 C -0.26 -6.99 9.50 -15.06 -0.14 -7.13 16 21 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 22 C 0.01 0.35 5.31 -17.43 -0.09 0.25 16 23 N -0.90 -25.59 10.55 55.49 0.59 -25.01 16 24 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.10 1.79 5.78 -3.71 -0.02 1.77 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.56 5.68 -51.93 -0.29 1.26 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.33 8.09 -51.92 -0.42 -0.09 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.16 1.16 7.44 -52.49 -0.39 0.77 16 38 H 0.08 0.73 4.71 -51.93 -0.24 0.49 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.93 6.73 -51.93 -0.35 0.58 16 44 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 45 H -0.01 -0.15 6.46 -51.93 -0.34 -0.49 16 46 H 0.06 1.58 6.84 -51.93 -0.35 1.23 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.07 1.21 7.52 -51.93 -0.39 0.82 16 49 H 0.09 2.03 7.03 -51.93 -0.36 1.67 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -31.45 384.47 -8.20 -39.65 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.73 Total: -0.77 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.67 Total: 3.05 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.35 Total: -54.29 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.45 -8.20 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027470820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.550 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.78 seconds