Wall clock time and date at job start Tue Mar 31 2020 21:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47385 * 2 1 4 4 N 1.31931 * 120.17477 * 274.68106 * 3 2 1 5 5 N 1.28277 * 122.32686 * 180.02562 * 4 3 2 6 6 C 1.31916 * 122.51661 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.01144 * 180.02562 * 6 5 4 8 8 C 1.38504 * 119.97059 * 359.72511 * 6 5 4 9 9 C 1.39728 * 120.17228 * 94.70033 * 3 2 1 10 10 C 1.48134 * 121.14705 * 359.97438 * 9 3 2 11 11 O 1.21517 * 119.99591 * 54.06078 * 10 9 3 12 12 N 1.34771 * 119.99957 * 234.06079 * 10 9 3 13 13 C 1.46922 * 120.63432 * 355.85369 * 12 10 9 14 14 C 1.53192 * 108.77574 * 126.39362 * 13 12 10 15 15 C 1.53030 * 109.31668 * 54.63689 * 14 13 12 16 16 C 1.53051 * 109.53752 * 298.63512 * 15 14 13 17 17 H 1.09000 * 109.49076 * 301.38368 * 16 15 14 18 18 N 1.46491 * 109.49758 * 181.31838 * 16 15 14 19 19 C 1.46504 * 120.00207 * 300.27032 * 18 16 15 20 20 C 1.36940 * 120.00384 * 120.00280 * 18 16 15 21 21 H 1.08002 * 119.99435 * 329.14431 * 20 18 16 22 22 C 1.38807 * 120.00498 * 149.14006 * 20 18 16 23 23 N 1.31620 * 119.99843 * 2.70058 * 22 20 18 24 24 Si 1.86802 * 120.00011 * 182.69380 * 22 20 18 25 25 H 1.48503 * 109.46903 * 90.00627 * 24 22 20 26 26 H 1.48501 * 109.47073 * 210.00193 * 24 22 20 27 27 H 1.48496 * 109.47265 * 330.00588 * 24 22 20 28 28 C 1.46933 * 120.62770 * 175.85056 * 12 10 9 29 29 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46761 * 299.99882 * 1 2 3 31 31 H 1.09000 * 109.46673 * 59.99936 * 1 2 3 32 32 H 1.09002 * 109.47182 * 239.99869 * 2 1 3 33 33 H 1.08996 * 109.47560 * 120.00082 * 2 1 3 34 34 H 1.08998 * 109.47173 * 90.00955 * 7 6 5 35 35 H 1.09007 * 109.46887 * 210.00048 * 7 6 5 36 36 H 1.09003 * 109.47723 * 330.00036 * 7 6 5 37 37 H 1.07993 * 121.09052 * 180.30264 * 8 6 5 38 38 H 1.08998 * 109.58560 * 6.60144 * 13 12 10 39 39 H 1.09000 * 109.58722 * 246.18002 * 13 12 10 40 40 H 1.09000 * 109.49870 * 294.67964 * 14 13 12 41 41 H 1.09008 * 109.49646 * 174.58987 * 14 13 12 42 42 H 1.08993 * 109.46419 * 178.61612 * 15 14 13 43 43 H 1.08998 * 109.46362 * 58.65142 * 15 14 13 44 44 H 1.08998 * 109.46978 * 273.85658 * 19 18 16 45 45 H 1.09000 * 109.46774 * 33.85334 * 19 18 16 46 46 H 1.08994 * 109.47080 * 153.85085 * 19 18 16 47 47 H 0.96999 * 119.99505 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58304 * 113.81851 * 28 12 10 49 49 H 1.09000 * 109.58618 * 353.39729 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1657 2.0770 -1.1367 5 7 2.5898 3.2867 -1.1848 6 6 2.9235 3.9646 -0.1035 7 6 3.4148 5.3840 -0.2254 8 6 2.8161 3.3734 1.1444 9 6 2.3598 2.0499 1.2039 10 6 2.2227 1.3443 2.4992 11 8 2.7633 0.2687 2.6653 12 7 1.4984 1.8952 3.4933 13 6 0.9144 3.2347 3.3404 14 6 -0.5867 3.1548 3.6354 15 6 -0.7985 2.5308 5.0166 16 6 -0.2274 1.1109 5.0298 17 1 -0.7183 0.5142 4.2609 18 7 -0.4587 0.5030 6.3424 19 6 0.0988 1.1248 7.5461 20 6 -1.2007 -0.6434 6.4450 21 1 -1.9964 -0.8364 5.7407 22 6 -0.9301 -1.5573 7.4541 23 7 0.0040 -1.2975 8.3442 24 14 -1.8919 -3.1559 7.5489 25 1 -1.1949 -4.2006 6.7564 26 1 -1.9893 -3.5917 8.9652 27 1 -3.2559 -2.9462 7.0005 28 6 1.2777 1.1676 4.7506 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.5677 6.0677 -0.1707 35 1 4.1085 5.5995 0.5874 36 1 3.9237 5.5116 -1.1809 37 1 3.0797 3.9132 2.0418 38 1 1.0681 3.5860 2.3201 39 1 1.3884 3.9221 4.0410 40 1 -1.0738 2.5390 2.8794 41 1 -1.0144 4.1573 3.6196 42 1 -1.8649 2.4953 5.2394 43 1 -0.2904 3.1335 5.7693 44 1 1.1188 0.7717 7.6983 45 1 0.1035 2.2082 7.4265 46 1 -0.5109 0.8571 8.4090 47 1 0.1928 -1.9360 9.0496 48 1 1.7814 1.6864 5.5662 49 1 1.6711 0.1551 4.6607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027470820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:22 Heat of formation + Delta-G solvation = 22.637208 kcal Electronic energy + Delta-G solvation = -29926.394661 eV Core-core repulsion = 26081.785785 eV Total energy + Delta-G solvation = -3844.608876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.65006 -41.03197 -39.02895 -36.91422 -36.20409 -34.98636 -33.93488 -32.90554 -32.65654 -30.47628 -28.95266 -28.03451 -27.29070 -26.03679 -25.47277 -24.64352 -23.16947 -23.00845 -21.37541 -20.17568 -18.94102 -18.85523 -18.42402 -17.39681 -17.09591 -16.96043 -16.35983 -16.06562 -15.78321 -15.46143 -15.41826 -15.15979 -14.96960 -14.78497 -14.61098 -14.40595 -14.09920 -13.98897 -13.87389 -13.56998 -13.29597 -13.19677 -13.00945 -12.88616 -12.81075 -12.54579 -12.24192 -12.20272 -12.19419 -12.15783 -11.94566 -11.78674 -11.75235 -11.60172 -11.40196 -11.10819 -10.63925 -10.61094 -10.57597 -9.83334 -8.66506 -7.89853 -5.41699 -0.69815 -0.28677 1.29167 1.43349 1.45924 1.53081 1.70894 2.30557 2.47028 2.78871 3.02225 3.18647 3.27837 3.39027 3.58831 3.69365 3.92235 3.96381 3.98136 4.03305 4.09817 4.18833 4.22570 4.26655 4.33908 4.45351 4.53106 4.62333 4.65828 4.76409 4.81524 4.81855 4.85971 4.90285 4.93957 4.96061 5.00771 5.09200 5.13858 5.18097 5.28934 5.31987 5.36449 5.39981 5.54672 5.62158 5.74092 6.19354 6.36126 6.84354 7.15329 7.53790 7.83814 8.29322 9.14299 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.003375 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.255701 B = 8295.353792 C = 9081.360295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C 0.102 3.898 4 N -0.255 5.255 5 N -0.255 5.255 6 C 0.068 3.932 7 C -0.098 4.098 8 C -0.072 4.072 9 C -0.124 4.124 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.588 5.588 13 C 0.094 3.906 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.168 3.832 17 H 0.044 0.956 18 N -0.608 5.608 19 C 0.178 3.822 20 C -0.270 4.270 21 H 0.064 0.936 22 C -0.041 4.041 23 N -0.931 5.931 24 Si 0.963 3.037 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.267 1.267 28 C 0.115 3.885 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.191 0.809 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.056 0.944 43 H 0.069 0.931 44 H -0.009 1.009 45 H 0.030 0.970 46 H 0.031 0.969 47 H 0.250 0.750 48 H 0.068 0.932 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 17.565 -15.031 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.043 4.043 4 N -0.096 5.096 5 N -0.097 5.097 6 C -0.077 4.077 7 C -0.156 4.156 8 C -0.101 4.101 9 C -0.138 4.138 10 C 0.348 3.652 11 O -0.446 6.446 12 N -0.319 5.319 13 C -0.027 4.027 14 C -0.161 4.161 15 C -0.162 4.162 16 C 0.060 3.940 17 H 0.063 0.937 18 N -0.330 5.330 19 C 0.033 3.967 20 C -0.400 4.400 21 H 0.082 0.918 22 C -0.237 4.237 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.192 1.192 28 C -0.009 4.009 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.208 0.792 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.009 0.991 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.834 16.900 -16.421 23.874 hybrid contribution -0.122 -1.743 2.096 2.728 sum 3.712 15.157 -14.326 21.184 Atomic orbital electron populations 1.21636 0.92565 1.03339 1.01833 1.20677 0.97803 0.89272 1.04837 1.22981 0.93853 0.98619 0.88893 1.72989 1.10500 1.02213 1.23898 1.72763 1.07355 1.00920 1.28653 1.23480 0.94895 1.00393 0.88938 1.20891 1.03100 0.86127 1.05512 1.22904 0.93956 0.91916 1.01333 1.20963 1.02334 0.96335 0.94196 1.18291 0.78925 0.84605 0.83405 1.90790 1.48650 1.23163 1.81966 1.48222 1.50056 1.18957 1.14671 1.22357 0.94380 0.81951 1.04008 1.21878 0.95269 1.02828 0.96141 1.21916 1.00959 0.95574 0.97733 1.20781 0.91920 0.94255 0.87078 0.93718 1.44023 1.60431 1.27426 1.01154 1.20540 0.95611 0.91971 0.88544 1.19444 1.10248 0.96616 1.13731 0.91810 1.25956 0.98509 1.00503 0.98707 1.70181 1.34743 1.36028 1.16703 0.85344 0.78661 0.80344 0.76575 1.21595 1.21710 1.19204 1.22106 0.98825 0.96061 0.83910 0.90494 0.93801 0.91325 0.88380 0.90175 0.87541 0.87501 0.89692 0.79150 0.88168 0.87842 0.92557 0.87177 0.92494 0.91237 0.99102 0.95159 0.95045 0.94104 0.91351 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.90 71.98 0.71 -2.52 16 2 C -0.09 -2.32 5.97 29.85 0.18 -2.14 16 3 C 0.10 2.74 6.16 42.90 0.26 3.00 16 4 N -0.26 -6.96 11.42 -46.95 -0.54 -7.49 16 5 N -0.25 -6.06 11.41 -47.70 -0.54 -6.60 16 6 C 0.07 1.12 6.86 42.61 0.29 1.41 16 7 C -0.10 -0.69 10.19 71.24 0.73 0.04 16 8 C -0.07 -1.19 7.31 22.79 0.17 -1.03 16 9 C -0.12 -3.08 4.92 -19.83 -0.10 -3.18 16 10 C 0.56 17.39 6.67 86.87 0.58 17.97 16 11 O -0.57 -22.79 14.62 -3.77 -0.06 -22.84 16 12 N -0.59 -16.54 2.97 -822.00 -2.44 -18.98 16 13 C 0.09 1.69 5.60 86.36 0.48 2.17 16 14 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 15 C -0.12 -3.50 5.10 30.62 0.16 -3.35 16 16 C 0.17 6.49 2.75 45.07 0.12 6.62 16 17 H 0.04 1.89 7.89 -2.39 -0.02 1.87 16 18 N -0.61 -29.57 2.81 -702.36 -1.97 -31.54 16 19 C 0.18 8.45 7.97 127.77 1.02 9.46 16 20 C -0.27 -14.78 9.50 84.03 0.80 -13.98 16 21 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 22 C -0.04 -2.28 5.31 84.86 0.45 -1.82 16 23 N -0.93 -54.67 10.55 21.65 0.23 -54.45 16 24 Si 0.96 45.23 29.55 68.60 2.03 47.26 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 C 0.12 4.26 5.78 86.36 0.50 4.76 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.55 5.68 -2.39 -0.01 2.54 16 34 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.11 0.25 8.09 -2.38 -0.02 0.23 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.19 1.76 7.44 -2.91 -0.02 1.74 16 38 H 0.10 1.40 4.71 -2.39 -0.01 1.39 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.89 6.73 -2.39 -0.02 1.87 16 44 H -0.01 -0.49 7.79 -2.39 -0.02 -0.51 16 45 H 0.03 1.18 6.46 -2.39 -0.02 1.17 16 46 H 0.03 1.65 6.84 -2.39 -0.02 1.63 16 47 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 48 H 0.07 2.48 7.52 -2.39 -0.02 2.47 16 49 H 0.05 2.30 7.03 -2.39 -0.02 2.28 16 Total: -1.00 -73.81 384.47 4.19 -69.62 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.95 Total: 9.85 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.54 Total: 15.17 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -5.27 Total: -119.06 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.81 4.19 -69.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027470820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.257 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds