Wall clock time and date at job start Tue Mar 31 2020 17:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.12362 * 2 1 4 4 C 1.32320 * 120.81708 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10466 * 359.74688 * 4 3 2 6 6 C 1.38581 * 118.39543 * 0.51786 * 5 4 3 7 7 C 1.50699 * 120.44407 * 179.76045 * 6 5 4 8 8 C 1.53005 * 109.46977 * 124.71742 * 7 6 5 9 9 C 1.50699 * 109.46977 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00260 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99970 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62992 * 0.02562 * 11 9 8 13 13 C 1.53199 * 108.77713 * 126.41195 * 12 11 9 14 14 C 1.53035 * 109.31105 * 54.63425 * 13 12 11 15 15 C 1.53043 * 109.53885 * 298.63211 * 14 13 12 16 16 H 1.08999 * 109.50236 * 301.41856 * 15 14 13 17 17 N 1.46503 * 109.49733 * 181.31584 * 15 14 13 18 18 C 1.46494 * 120.00066 * 300.00510 * 17 15 14 19 19 C 1.36934 * 119.99675 * 120.00672 * 17 15 14 20 20 H 1.08003 * 120.00148 * 21.98816 * 19 17 15 21 21 C 1.38815 * 119.99626 * 201.99523 * 19 17 15 22 22 N 1.31620 * 120.00046 * 12.67715 * 21 19 17 23 23 Si 1.86798 * 119.99795 * 192.67658 * 21 19 17 24 24 H 1.48502 * 109.47095 * 59.99838 * 23 21 19 25 25 H 1.48495 * 109.47277 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47292 * 300.00212 * 23 21 19 27 27 C 1.46922 * 120.63081 * 180.02562 * 11 9 8 28 28 N 1.31777 * 119.12162 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47053 * 269.97388 * 1 2 3 30 30 H 1.08995 * 109.47340 * 29.97124 * 1 2 3 31 31 H 1.09002 * 109.47412 * 149.97865 * 1 2 3 32 32 H 1.07995 * 120.44497 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.79970 * 180.25413 * 5 4 3 34 34 H 1.09002 * 109.47574 * 4.72424 * 7 6 5 35 35 H 1.08999 * 109.47236 * 244.71682 * 7 6 5 36 36 H 1.09000 * 109.47136 * 59.99823 * 8 7 6 37 37 H 1.08999 * 109.47089 * 300.00030 * 8 7 6 38 38 H 1.08998 * 109.58739 * 6.62525 * 12 11 9 39 39 H 1.08997 * 109.58904 * 246.19794 * 12 11 9 40 40 H 1.09005 * 109.49443 * 294.67959 * 13 12 11 41 41 H 1.08997 * 109.52404 * 174.60748 * 13 12 11 42 42 H 1.09000 * 109.46057 * 178.61904 * 14 13 12 43 43 H 1.08997 * 109.44978 * 58.64975 * 14 13 12 44 44 H 1.08999 * 109.47406 * 94.33985 * 18 17 15 45 45 H 1.09007 * 109.47141 * 214.33728 * 18 17 15 46 46 H 1.09002 * 109.47151 * 334.33332 * 18 17 15 47 47 H 0.96999 * 119.99551 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.58411 * 113.80727 * 27 11 9 49 49 H 1.08996 * 109.58833 * 353.38012 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1809 -0.0002 0.0043 6 6 3.4712 -1.1904 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7164 -3.3570 1.1796 9 6 4.4408 -4.6784 1.1787 10 8 5.2604 -4.9202 0.3180 11 7 4.1787 -5.5913 2.1350 12 6 3.1890 -5.3128 3.1846 13 6 2.1668 -6.4535 3.2137 14 6 2.9004 -7.7863 3.3793 15 6 3.8364 -8.0068 2.1886 16 1 3.2578 -8.0001 1.2649 17 7 4.5147 -9.2973 2.3323 18 6 5.3615 -9.5538 3.4998 19 6 4.3572 -10.2638 1.3751 20 1 4.0508 -9.9899 0.3763 21 6 4.5913 -11.5957 1.6886 22 7 4.7184 -11.9633 2.9460 23 14 4.7258 -12.8662 0.3259 24 1 5.8493 -12.5072 -0.5765 25 1 4.9764 -14.2041 0.9194 26 1 3.4593 -12.8972 -0.4489 27 6 4.8772 -6.8838 2.1477 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 3.9906 2.1374 -0.0001 33 1 5.2609 -0.0002 0.0081 34 1 5.2684 -2.3379 0.0872 35 1 3.9897 -3.0389 -0.9335 36 1 2.6441 -3.5308 1.0905 37 1 3.9228 -2.8297 2.1110 38 1 2.6815 -4.3728 2.9681 39 1 3.6897 -5.2461 4.1505 40 1 1.6039 -6.4615 2.2803 41 1 1.4828 -6.3084 4.0498 42 1 2.1739 -8.5976 3.4249 43 1 3.4828 -7.7681 4.3004 44 1 4.7768 -10.0582 4.2691 45 1 6.2005 -10.1857 3.2084 46 1 5.7375 -8.6083 3.8907 47 1 4.8816 -12.8941 3.1650 48 1 5.5157 -6.9454 3.0290 49 1 5.4836 -6.9803 1.2471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027504802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:23 Heat of formation + Delta-G solvation = 29.113944 kcal Electronic energy + Delta-G solvation = -28400.013775 eV Core-core repulsion = 24555.685752 eV Total energy + Delta-G solvation = -3844.328024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42452 -39.99599 -37.55246 -35.35071 -35.08668 -33.73379 -32.42828 -31.73800 -31.22427 -29.00900 -28.69109 -26.44651 -25.98180 -24.69216 -23.66079 -23.17188 -21.97220 -21.59209 -19.49183 -18.54926 -17.89235 -17.32064 -16.71616 -16.24593 -15.87130 -15.66507 -15.47512 -15.31997 -14.87303 -14.16092 -14.01623 -14.00417 -13.72989 -13.45826 -13.40591 -12.99211 -12.86759 -12.66895 -12.66592 -12.49202 -12.28308 -12.23361 -11.91221 -11.50151 -11.16168 -11.03652 -10.92602 -10.83593 -10.79418 -10.61730 -10.41113 -10.29765 -10.13090 -9.86954 -9.80540 -9.71541 -9.56054 -9.49612 -8.59796 -8.32347 -6.75072 -5.70900 -3.16503 0.56764 0.73526 2.78466 3.14209 3.40328 3.41430 3.46127 3.48386 3.56902 3.75554 4.10262 4.51177 4.51816 4.70584 4.77091 4.81990 4.91219 4.97927 5.04852 5.13699 5.17713 5.20930 5.32932 5.33662 5.46147 5.51366 5.55220 5.57472 5.61036 5.75428 5.79691 5.83027 5.87404 6.01433 6.11302 6.17553 6.23956 6.39544 6.52586 6.66645 6.70954 6.79799 6.95213 7.01430 7.39765 7.63566 7.73304 7.79229 7.82959 8.34033 8.42094 9.25077 9.87747 10.35814 11.33967 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.002231 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.079056 B =12545.359658 C =12741.208343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.186 3.814 7 C -0.057 4.057 8 C -0.129 4.129 9 C 0.512 3.488 10 O -0.545 6.545 11 N -0.605 5.605 12 C 0.108 3.892 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.170 3.830 16 H 0.064 0.936 17 N -0.593 5.593 18 C 0.163 3.837 19 C -0.254 4.254 20 H 0.068 0.932 21 C 0.002 3.998 22 N -0.909 5.909 23 Si 0.906 3.094 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.096 3.904 28 N -0.515 5.515 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.043 0.957 46 H -0.002 1.002 47 H 0.252 0.748 48 H 0.062 0.938 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 25.625 -0.400 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.255 4.255 6 C 0.040 3.960 7 C -0.095 4.095 8 C -0.170 4.170 9 C 0.300 3.700 10 O -0.423 6.423 11 N -0.338 5.338 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.315 5.315 18 C 0.018 3.982 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.027 4.027 28 N -0.231 5.231 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.166 0.834 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.712 25.275 -0.778 25.924 hybrid contribution 1.034 -0.759 -0.456 1.362 sum -4.677 24.516 -1.235 24.989 Atomic orbital electron populations 1.20581 0.85665 1.04237 1.03968 1.23299 0.98234 0.83328 0.89947 1.68266 1.10212 1.30567 1.15257 1.23230 0.89690 0.98642 0.89793 1.22806 1.03104 0.94123 1.05451 1.21800 0.89569 0.95948 0.88675 1.20387 0.99275 0.89632 1.00235 1.21560 1.02374 0.93574 0.99465 1.20496 0.82838 0.85609 0.81086 1.90697 1.35207 1.79316 1.37119 1.48200 1.40992 1.17027 1.27610 1.21760 0.90148 0.98653 0.90990 1.21934 0.97511 0.95593 1.02102 1.22121 0.99379 0.95419 1.00270 1.20572 0.91209 0.85679 0.96522 0.91751 1.43889 1.52541 1.10696 1.24355 1.20787 0.94071 0.94104 0.89221 1.19193 1.42524 0.86231 0.90394 0.91435 1.24990 1.01601 0.97006 0.96034 1.70064 1.53711 1.16121 1.15477 0.86317 0.78141 0.80672 0.81314 1.21048 1.21663 1.20964 1.22411 0.96250 0.81065 1.02999 1.68104 1.09585 1.30498 1.14882 0.89545 0.89687 0.89460 0.81481 0.83369 0.88871 0.88293 0.87790 0.89323 0.90307 0.91517 0.91706 0.91308 0.91478 0.92499 0.95238 0.93779 0.98403 0.93740 0.91929 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.32 36.01 0.37 -0.22 16 2 C 0.32 3.17 7.64 -157.20 -1.20 1.97 16 3 N -0.53 -5.19 10.33 -10.72 -0.11 -5.31 16 4 C 0.15 1.17 11.31 -17.20 -0.19 0.98 16 5 C -0.23 -1.81 9.80 -39.31 -0.39 -2.19 16 6 C 0.19 1.81 6.21 -82.24 -0.51 1.30 16 7 C -0.06 -0.57 4.94 -27.88 -0.14 -0.71 16 8 C -0.13 -1.35 3.92 -27.88 -0.11 -1.46 16 9 C 0.51 7.54 7.70 -10.98 -0.08 7.45 16 10 O -0.55 -10.07 15.39 5.56 0.09 -9.99 16 11 N -0.61 -8.99 2.97 -172.78 -0.51 -9.50 16 12 C 0.11 1.24 6.34 -3.71 -0.02 1.22 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C -0.13 -2.29 5.15 -26.69 -0.14 -2.43 16 15 C 0.17 3.45 2.74 -67.82 -0.19 3.26 16 16 H 0.06 1.40 7.86 -51.93 -0.41 0.99 16 17 N -0.59 -14.77 2.82 -173.36 -0.49 -15.26 16 18 C 0.16 3.96 8.03 59.84 0.48 4.44 16 19 C -0.25 -7.03 9.60 -15.06 -0.14 -7.18 16 20 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 21 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 22 N -0.91 -26.44 10.64 55.49 0.59 -25.85 16 23 Si 0.91 22.15 29.57 -169.99 -5.03 17.13 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.10 1.77 5.78 -3.72 -0.02 1.75 16 28 N -0.52 -5.53 9.94 -6.99 -0.07 -5.60 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.15 0.78 8.01 -52.49 -0.42 0.36 16 34 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.10 1.06 7.53 -51.93 -0.39 0.67 16 37 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 38 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 44 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 45 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 46 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.06 1.14 6.49 -51.93 -0.34 0.81 16 49 H 0.09 1.88 7.01 -51.93 -0.36 1.51 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -33.44 390.27 -10.07 -43.51 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.89 Total: -1.29 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.53 Total: 6.28 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.59 Total: -61.52 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.44 -10.07 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027504802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.628 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds