Wall clock time and date at job start Tue Mar 31 2020 17:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31808 * 119.12362 * 2 1 4 4 C 1.32320 * 120.81708 * 180.02562 * 3 2 1 5 5 C 1.38619 * 119.10466 * 359.74688 * 4 3 2 6 6 C 1.38581 * 118.39543 * 0.51786 * 5 4 3 7 7 C 1.50699 * 120.44407 * 179.76045 * 6 5 4 8 8 C 1.53005 * 109.46977 * 124.71742 * 7 6 5 9 9 C 1.50699 * 109.46977 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00260 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99970 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62992 * 0.02562 * 11 9 8 13 13 C 1.53199 * 108.77713 * 126.41195 * 12 11 9 14 14 C 1.53035 * 109.31105 * 54.63425 * 13 12 11 15 15 C 1.53043 * 109.53885 * 298.63211 * 14 13 12 16 16 H 1.08999 * 109.50236 * 301.41856 * 15 14 13 17 17 N 1.46503 * 109.49733 * 181.31584 * 15 14 13 18 18 C 1.46494 * 120.00066 * 300.00510 * 17 15 14 19 19 C 1.36934 * 119.99675 * 120.00672 * 17 15 14 20 20 H 1.08003 * 120.00148 * 21.98816 * 19 17 15 21 21 C 1.38815 * 119.99626 * 201.99523 * 19 17 15 22 22 N 1.31620 * 120.00046 * 12.67715 * 21 19 17 23 23 Si 1.86798 * 119.99795 * 192.67658 * 21 19 17 24 24 H 1.48502 * 109.47095 * 59.99838 * 23 21 19 25 25 H 1.48495 * 109.47277 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47292 * 300.00212 * 23 21 19 27 27 C 1.46922 * 120.63081 * 180.02562 * 11 9 8 28 28 N 1.31777 * 119.12162 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47053 * 269.97388 * 1 2 3 30 30 H 1.08995 * 109.47340 * 29.97124 * 1 2 3 31 31 H 1.09002 * 109.47412 * 149.97865 * 1 2 3 32 32 H 1.07995 * 120.44497 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.79970 * 180.25413 * 5 4 3 34 34 H 1.09002 * 109.47574 * 4.72424 * 7 6 5 35 35 H 1.08999 * 109.47236 * 244.71682 * 7 6 5 36 36 H 1.09000 * 109.47136 * 59.99823 * 8 7 6 37 37 H 1.08999 * 109.47089 * 300.00030 * 8 7 6 38 38 H 1.08998 * 109.58739 * 6.62525 * 12 11 9 39 39 H 1.08997 * 109.58904 * 246.19794 * 12 11 9 40 40 H 1.09005 * 109.49443 * 294.67959 * 13 12 11 41 41 H 1.08997 * 109.52404 * 174.60748 * 13 12 11 42 42 H 1.09000 * 109.46057 * 178.61904 * 14 13 12 43 43 H 1.08997 * 109.44978 * 58.64975 * 14 13 12 44 44 H 1.08999 * 109.47406 * 94.33985 * 18 17 15 45 45 H 1.09007 * 109.47141 * 214.33728 * 18 17 15 46 46 H 1.09002 * 109.47151 * 334.33332 * 18 17 15 47 47 H 0.96999 * 119.99551 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.58411 * 113.80727 * 27 11 9 49 49 H 1.08996 * 109.58833 * 353.38012 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1809 -0.0002 0.0043 6 6 3.4712 -1.1904 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7164 -3.3570 1.1796 9 6 4.4408 -4.6784 1.1787 10 8 5.2604 -4.9202 0.3180 11 7 4.1787 -5.5913 2.1350 12 6 3.1890 -5.3128 3.1846 13 6 2.1668 -6.4535 3.2137 14 6 2.9004 -7.7863 3.3793 15 6 3.8364 -8.0068 2.1886 16 1 3.2578 -8.0001 1.2649 17 7 4.5147 -9.2973 2.3323 18 6 5.3615 -9.5538 3.4998 19 6 4.3572 -10.2638 1.3751 20 1 4.0508 -9.9899 0.3763 21 6 4.5913 -11.5957 1.6886 22 7 4.7184 -11.9633 2.9460 23 14 4.7258 -12.8662 0.3259 24 1 5.8493 -12.5072 -0.5765 25 1 4.9764 -14.2041 0.9194 26 1 3.4593 -12.8972 -0.4489 27 6 4.8772 -6.8838 2.1477 28 7 2.1483 -1.1512 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 3.9906 2.1374 -0.0001 33 1 5.2609 -0.0002 0.0081 34 1 5.2684 -2.3379 0.0872 35 1 3.9897 -3.0389 -0.9335 36 1 2.6441 -3.5308 1.0905 37 1 3.9228 -2.8297 2.1110 38 1 2.6815 -4.3728 2.9681 39 1 3.6897 -5.2461 4.1505 40 1 1.6039 -6.4615 2.2803 41 1 1.4828 -6.3084 4.0498 42 1 2.1739 -8.5976 3.4249 43 1 3.4828 -7.7681 4.3004 44 1 4.7768 -10.0582 4.2691 45 1 6.2005 -10.1857 3.2084 46 1 5.7375 -8.6083 3.8907 47 1 4.8816 -12.8941 3.1650 48 1 5.5157 -6.9454 3.0290 49 1 5.4836 -6.9803 1.2471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027504802.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:19 Heat of formation + Delta-G solvation = 8.920855 kcal Electronic energy + Delta-G solvation = -28400.889413 eV Core-core repulsion = 24555.685752 eV Total energy + Delta-G solvation = -3845.203662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07506 -41.21569 -38.98760 -36.77819 -36.11621 -34.33598 -34.00109 -32.87116 -32.55492 -30.45968 -29.40754 -28.07603 -27.40529 -25.83260 -25.14598 -23.98960 -23.03982 -22.71803 -20.95949 -19.81062 -18.79999 -18.55122 -18.32242 -17.15390 -16.92750 -16.86612 -16.54608 -16.12185 -16.05883 -15.70174 -15.47439 -15.19949 -14.84950 -14.74299 -14.46066 -14.17024 -13.85802 -13.82376 -13.71235 -13.56149 -13.44676 -13.18791 -13.04981 -12.85937 -12.78369 -12.50197 -12.31282 -12.28872 -12.13487 -11.93516 -11.79016 -11.78492 -11.68972 -11.50145 -11.38966 -10.83155 -10.65674 -10.31459 -10.19467 -9.69181 -8.77283 -7.84929 -5.32589 -0.05910 0.10613 1.43330 1.46171 1.52620 1.62981 1.98977 2.49537 2.75356 2.93815 3.17187 3.27666 3.41241 3.61313 3.68431 3.93667 4.00737 4.06683 4.11272 4.15059 4.16377 4.25038 4.26752 4.37273 4.50777 4.54034 4.63219 4.65736 4.73110 4.74970 4.78088 4.85016 4.88196 4.92312 4.97864 5.04199 5.09806 5.11236 5.15088 5.27844 5.44033 5.48953 5.51739 5.53307 5.62671 5.71528 6.08694 6.30648 6.47797 7.12809 7.14861 7.18508 7.84937 8.27027 9.17488 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021433 B = 0.002231 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.079056 B =12545.359658 C =12741.208343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.545 5.545 4 C 0.149 3.851 5 C -0.228 4.228 6 C 0.171 3.829 7 C -0.051 4.051 8 C -0.114 4.114 9 C 0.508 3.492 10 O -0.590 6.590 11 N -0.607 5.607 12 C 0.106 3.894 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.168 3.832 16 H 0.042 0.958 17 N -0.611 5.611 18 C 0.181 3.819 19 C -0.266 4.266 20 H 0.061 0.939 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.113 3.887 28 N -0.535 5.535 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.201 0.799 33 H 0.174 0.826 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.007 0.993 45 H 0.014 0.986 46 H 0.031 0.969 47 H 0.249 0.751 48 H 0.066 0.934 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 28.488 0.255 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.261 5.261 4 C -0.016 4.016 5 C -0.249 4.249 6 C 0.026 3.974 7 C -0.090 4.090 8 C -0.154 4.154 9 C 0.298 3.702 10 O -0.471 6.471 11 N -0.339 5.339 12 C -0.015 4.015 13 C -0.162 4.162 14 C -0.162 4.162 15 C 0.060 3.940 16 H 0.061 0.939 17 N -0.334 5.334 18 C 0.036 3.964 19 C -0.396 4.396 20 H 0.079 0.921 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.202 1.202 27 C -0.012 4.012 28 N -0.251 5.251 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.218 0.782 33 H 0.191 0.809 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.026 0.974 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.476 28.185 -0.113 28.920 hybrid contribution 1.268 -1.562 -0.696 2.129 sum -5.207 26.624 -0.810 27.140 Atomic orbital electron populations 1.20648 0.84171 1.04619 1.04783 1.23777 0.99383 0.83255 0.90045 1.68329 1.11362 1.30600 1.15800 1.23832 0.89213 1.00048 0.88508 1.23075 1.04372 0.93340 1.04146 1.21797 0.89623 0.96261 0.89745 1.20284 0.99748 0.89799 0.99153 1.21517 1.01916 0.90995 1.01014 1.21288 0.82254 0.86710 0.79924 1.90681 1.37291 1.80328 1.38755 1.48277 1.41390 1.15536 1.28705 1.22052 0.89219 0.99514 0.90743 1.21892 0.97843 0.93114 1.03371 1.21935 0.98331 0.97491 0.98460 1.20704 0.91895 0.84417 0.97016 0.93914 1.44098 1.53499 1.11795 1.23967 1.20494 0.92593 0.94865 0.88460 1.19438 1.42001 0.87260 0.90919 0.92083 1.25709 1.01926 0.98731 0.98118 1.70212 1.54793 1.16107 1.16988 0.85351 0.78179 0.78191 0.78783 1.20857 1.21576 1.20207 1.21878 0.95377 0.82495 1.01451 1.68087 1.10174 1.31106 1.15736 0.88428 0.88966 0.89378 0.78250 0.80871 0.88283 0.90298 0.86965 0.86523 0.86612 0.89680 0.92053 0.87970 0.94112 0.92297 0.97443 0.96762 0.95109 0.94162 0.91618 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.32 71.24 0.74 -0.28 16 2 C 0.30 5.49 7.64 138.75 1.06 6.55 16 3 N -0.55 -9.61 10.33 -187.84 -1.94 -11.55 16 4 C 0.15 1.89 11.31 84.71 0.96 2.85 16 5 C -0.23 -2.92 9.80 22.44 0.22 -2.70 16 6 C 0.17 2.99 6.21 42.56 0.26 3.26 16 7 C -0.05 -0.96 4.94 29.85 0.15 -0.81 16 8 C -0.11 -2.10 3.92 29.85 0.12 -1.98 16 9 C 0.51 14.33 7.70 87.66 0.67 15.00 16 10 O -0.59 -21.98 15.39 -3.02 -0.05 -22.03 16 11 N -0.61 -17.04 2.97 -818.96 -2.43 -19.47 16 12 C 0.11 2.05 6.34 86.36 0.55 2.60 16 13 C -0.12 -2.82 6.08 30.67 0.19 -2.64 16 14 C -0.12 -4.16 5.15 30.62 0.16 -4.00 16 15 C 0.17 6.93 2.74 45.06 0.12 7.06 16 16 H 0.04 1.92 7.86 -2.39 -0.02 1.90 16 17 N -0.61 -31.34 2.82 -702.38 -1.98 -33.32 16 18 C 0.18 9.01 8.03 127.77 1.03 10.03 16 19 C -0.27 -15.20 9.60 84.03 0.81 -14.40 16 20 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 21 C -0.05 -2.85 5.10 84.86 0.43 -2.42 16 22 N -0.93 -55.89 10.64 21.65 0.23 -55.66 16 23 Si 0.97 46.50 29.57 68.60 2.03 48.53 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 C 0.11 4.15 5.78 86.36 0.50 4.65 16 28 N -0.54 -10.57 9.94 -176.03 -1.75 -12.32 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.17 1.23 8.01 -2.91 -0.02 1.21 16 34 H 0.10 1.69 7.90 -2.39 -0.02 1.67 16 35 H 0.08 1.77 8.10 -2.39 -0.02 1.76 16 36 H 0.11 1.94 7.53 -2.39 -0.02 1.93 16 37 H 0.12 1.54 7.94 -2.39 -0.02 1.53 16 38 H 0.12 1.48 5.93 -2.39 -0.01 1.46 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 44 H 0.01 0.39 7.41 -2.39 -0.02 0.38 16 45 H 0.01 0.76 7.21 -2.38 -0.02 0.74 16 46 H 0.03 1.30 6.35 -2.39 -0.02 1.28 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.07 2.36 6.49 -2.39 -0.02 2.34 16 49 H 0.06 2.46 7.01 -2.39 -0.02 2.45 16 Total: -1.00 -76.25 390.27 3.00 -73.24 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.94 Total: 9.80 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 7.96 Total: 22.78 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -7.87 Total: -132.32 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.25 3.00 -73.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027504802.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.164 kcal (2) G-P(sol) polarization free energy of solvation -76.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds