Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46879 * 2 1 4 4 N 1.32147 * 120.53546 * 90.00113 * 3 2 1 5 5 C 1.31869 * 120.96485 * 179.97438 * 4 3 2 6 6 N 1.31871 * 122.10047 * 359.97438 * 5 4 3 7 7 C 1.32146 * 120.96095 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.53595 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47008 * 89.99595 * 8 7 6 10 10 C 1.39946 * 118.92800 * 359.97438 * 7 6 5 11 11 C 1.47834 * 120.93913 * 180.02562 * 10 7 6 12 12 O 1.21557 * 119.99770 * 90.00270 * 11 10 7 13 13 N 1.34773 * 120.00174 * 269.99787 * 11 10 7 14 14 C 1.46500 * 119.99771 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00053 * 180.02562 * 13 11 10 16 16 H 1.08998 * 110.64310 * 359.30336 * 15 13 11 17 17 C 1.55152 * 110.72041 * 122.44428 * 15 13 11 18 18 C 1.55126 * 101.48930 * 153.73505 * 17 15 13 19 19 N 1.47431 * 104.94056 * 323.22217 * 18 17 15 20 20 C 1.36932 * 125.64953 * 204.03713 * 19 18 17 21 21 H 1.07994 * 120.00121 * 161.47689 * 20 19 18 22 22 C 1.38815 * 120.00038 * 341.47682 * 20 19 18 23 23 N 1.31611 * 119.99950 * 157.63350 * 22 20 19 24 24 Si 1.86805 * 119.99999 * 337.63783 * 22 20 19 25 25 H 1.48502 * 109.46989 * 84.53278 * 24 22 20 26 26 H 1.48494 * 109.46937 * 204.53330 * 24 22 20 27 27 H 1.48501 * 109.46643 * 324.53415 * 24 22 20 28 28 C 1.47023 * 108.70138 * 24.00396 * 19 18 17 29 29 H 1.09001 * 109.47287 * 60.00262 * 1 2 3 30 30 H 1.09002 * 109.46414 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47303 * 299.99828 * 1 2 3 32 32 H 1.09000 * 109.47519 * 240.00024 * 2 1 3 33 33 H 1.09001 * 109.47287 * 119.99738 * 2 1 3 34 34 H 1.08002 * 118.95548 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47133 * 209.99190 * 8 7 6 36 36 H 1.08996 * 109.47074 * 329.99811 * 8 7 6 37 37 H 1.09000 * 109.46980 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.47338 * 299.99952 * 9 8 7 39 39 H 1.08996 * 109.47027 * 60.00187 * 9 8 7 40 40 H 1.08999 * 109.47266 * 89.99749 * 14 13 11 41 41 H 1.09005 * 109.47009 * 209.99342 * 14 13 11 42 42 H 1.08995 * 109.47134 * 329.99397 * 14 13 11 43 43 H 1.09002 * 111.00866 * 271.93987 * 17 15 13 44 44 H 1.09002 * 111.00688 * 35.78864 * 17 15 13 45 45 H 1.08989 * 110.42301 * 204.29561 * 18 17 15 46 46 H 1.08996 * 110.20772 * 82.03748 * 18 17 15 47 47 H 0.97000 * 119.99997 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.88086 * 239.52411 * 28 19 18 49 49 H 1.09002 * 110.01479 * 118.43006 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2561 2.0538 1.1382 5 6 2.6960 3.2969 1.1481 6 7 2.9333 3.9652 0.0363 7 6 2.7368 3.4091 -1.1463 8 6 3.0105 4.1818 -2.4108 9 6 4.4631 3.9621 -2.8384 10 6 2.2703 2.0910 -1.2053 11 6 2.0356 1.4253 -2.5043 12 8 2.9315 0.8003 -3.0375 13 7 0.8283 1.5112 -3.0971 14 6 -0.2512 2.2648 -2.4546 15 6 0.5956 0.8510 -4.3841 16 1 1.4996 0.3477 -4.7268 17 6 -0.5850 -0.1504 -4.2817 18 6 -1.0885 -0.1855 -5.7486 19 7 -0.9336 1.1970 -6.2368 20 6 -1.6391 1.7643 -7.2641 21 1 -1.6821 2.8391 -7.3609 22 6 -2.2990 0.9580 -8.1813 23 7 -3.3050 1.4416 -8.8787 24 14 -1.7594 -0.8137 -8.4257 25 1 -2.4071 -1.6739 -7.4031 26 1 -2.1584 -1.2701 -9.7813 27 1 -0.2837 -0.9051 -8.2869 28 6 0.1032 1.8659 -5.4372 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.8675 3.7834 2.0970 35 1 2.3432 3.8354 -3.1999 36 1 2.8412 5.2435 -2.2317 37 1 4.6610 4.5206 -3.7532 38 1 5.1305 4.3084 -2.0493 39 1 4.6325 2.9004 -3.0175 40 1 -0.2173 3.3026 -2.7862 41 1 -1.2118 1.8275 -2.7272 42 1 -0.1280 2.2249 -1.3724 43 1 -0.2376 -1.1327 -3.9614 44 1 -1.3594 0.2255 -3.6130 45 1 -2.1357 -0.4853 -5.7842 46 1 -0.4775 -0.8673 -6.3401 47 1 -3.7664 0.8781 -9.5193 48 1 -0.3180 2.7402 -4.9409 49 1 0.9320 2.1670 -6.0779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033435231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = 40.511299 kcal Electronic energy + Delta-G solvation = -30227.571201 eV Core-core repulsion = 26383.737404 eV Total energy + Delta-G solvation = -3843.833797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.80548 -39.84397 -37.72566 -36.04030 -35.18338 -34.41262 -32.31306 -31.85650 -30.93882 -29.71034 -28.32797 -27.02818 -25.73136 -25.60660 -24.19066 -23.35963 -21.40606 -21.10943 -20.77714 -19.22097 -18.35809 -17.65825 -17.10644 -16.79496 -16.45265 -15.48948 -15.27738 -15.02313 -14.67060 -14.59242 -14.26562 -14.13088 -13.88196 -13.73518 -13.55609 -13.19425 -13.12118 -12.92072 -12.57243 -12.56616 -12.31852 -12.00412 -11.93609 -11.83847 -11.82382 -11.50088 -11.31283 -11.26010 -11.17975 -11.09263 -10.76674 -10.64594 -10.22622 -10.07946 -10.00951 -9.65738 -9.56996 -9.49740 -8.79064 -8.62668 -7.12022 -5.99786 -3.31234 0.37161 0.68083 2.30372 2.78605 3.30697 3.32655 3.46097 3.48029 3.62650 3.65308 3.90312 4.16934 4.50221 4.58128 4.75354 4.79463 4.89606 4.90815 4.94518 4.96724 5.02471 5.05675 5.17124 5.18053 5.27943 5.29894 5.36817 5.43309 5.46824 5.57335 5.61139 5.67964 5.68887 5.76366 5.78215 5.86332 5.88191 5.98395 6.06508 6.14369 6.25975 6.42794 6.50929 6.59443 6.64778 6.67224 7.23407 7.62949 7.72072 7.93658 8.25459 8.76889 9.62825 10.09589 11.16038 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.003474 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.473122 B = 8058.297534 C = 8736.477964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C 0.215 3.785 4 N -0.521 5.521 5 C 0.308 3.692 6 N -0.520 5.520 7 C 0.218 3.782 8 C -0.083 4.083 9 C -0.145 4.145 10 C -0.222 4.222 11 C 0.575 3.425 12 O -0.526 6.526 13 N -0.590 5.590 14 C 0.070 3.930 15 C 0.125 3.875 16 H 0.110 0.890 17 C -0.140 4.140 18 C 0.112 3.888 19 N -0.606 5.606 20 C -0.243 4.243 21 H 0.093 0.907 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.302 1.302 27 H -0.276 1.276 28 C 0.129 3.871 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.264 0.736 48 H 0.038 0.962 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 1.606 20.608 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C 0.068 3.932 4 N -0.235 5.235 5 C 0.021 3.979 6 N -0.234 5.234 7 C 0.071 3.929 8 C -0.121 4.121 9 C -0.203 4.203 10 C -0.229 4.229 11 C 0.360 3.640 12 O -0.402 6.402 13 N -0.321 5.321 14 C -0.073 4.073 15 C 0.022 3.978 16 H 0.128 0.872 17 C -0.179 4.179 18 C -0.013 4.013 19 N -0.333 5.333 20 C -0.370 4.370 21 H 0.110 0.890 22 C -0.175 4.175 23 N -0.550 5.550 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.230 1.230 27 H -0.201 1.201 28 C 0.003 3.997 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.217 0.783 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.622 1.765 20.989 23.590 hybrid contribution 0.089 -1.273 -0.884 1.552 sum 10.712 0.492 20.104 22.785 Atomic orbital electron populations 1.21871 0.92950 1.03319 1.02887 1.20674 0.97452 0.89363 1.04700 1.21821 0.88383 0.96360 0.86627 1.68291 1.14986 1.10814 1.29436 1.25118 0.88843 0.86902 0.97020 1.68299 1.18188 1.38531 0.98385 1.21848 0.87355 0.89194 0.94490 1.20685 0.99407 1.00615 0.91441 1.21703 0.93746 1.03162 1.01702 1.21443 1.07959 0.97436 0.96089 1.17766 0.82537 0.80030 0.83656 1.90814 1.42825 1.41953 1.64580 1.47793 1.10957 1.51721 1.21643 1.21937 0.91534 0.96745 0.97095 1.22313 0.99726 0.93932 0.81856 0.87242 1.23164 0.97366 0.98574 0.98804 1.21991 0.99813 0.88414 0.91112 1.44704 1.41592 1.09160 1.37853 1.18607 1.23598 0.92848 1.01963 0.88984 1.24989 0.97497 0.97674 0.97321 1.69831 1.20075 1.37055 1.28070 0.87006 0.79208 0.86358 0.76267 1.21150 1.22958 1.20133 1.21575 0.91874 0.94283 0.91968 0.91608 0.91034 0.91947 0.89402 0.88859 0.78328 0.89480 0.88777 0.91123 0.92228 0.91680 0.91966 0.89438 0.91545 0.91081 0.90634 0.91840 0.95407 0.92625 0.94409 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.68 37.16 0.36 -0.93 16 2 C -0.08 -0.82 5.91 -27.88 -0.16 -0.98 16 3 C 0.21 2.44 5.71 -81.82 -0.47 1.97 16 4 N -0.52 -5.68 10.36 -10.47 -0.11 -5.79 16 5 C 0.31 3.01 12.27 -92.02 -1.13 1.88 16 6 N -0.52 -5.79 10.36 -10.47 -0.11 -5.90 16 7 C 0.22 2.55 6.12 -81.82 -0.50 2.05 16 8 C -0.08 -0.88 5.91 -27.88 -0.16 -1.05 16 9 C -0.15 -1.50 9.90 37.16 0.37 -1.13 16 10 C -0.22 -2.72 3.94 -104.69 -0.41 -3.13 16 11 C 0.57 7.95 4.37 -12.34 -0.05 7.90 16 12 O -0.53 -8.90 16.40 5.32 0.09 -8.81 16 13 N -0.59 -7.75 2.87 -172.96 -0.50 -8.25 16 14 C 0.07 0.77 7.66 59.85 0.46 1.22 16 15 C 0.12 1.97 3.35 -66.10 -0.22 1.75 16 16 H 0.11 1.86 6.99 -51.93 -0.36 1.50 16 17 C -0.14 -2.18 6.64 -24.47 -0.16 -2.34 16 18 C 0.11 2.31 4.70 -2.41 -0.01 2.30 16 19 N -0.61 -14.00 3.21 -169.94 -0.54 -14.54 16 20 C -0.24 -6.69 10.57 -15.06 -0.16 -6.85 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 23 N -0.91 -27.41 13.97 55.49 0.78 -26.64 16 24 Si 0.88 22.11 24.27 -169.99 -4.13 17.99 16 25 H -0.28 -6.80 6.49 56.52 0.37 -6.43 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.28 -6.87 6.66 56.52 0.38 -6.49 16 28 C 0.13 2.43 6.88 -3.06 -0.02 2.41 16 29 H 0.07 0.60 4.99 -51.93 -0.26 0.34 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.95 7.18 -51.93 -0.37 0.58 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.09 0.98 7.18 -51.93 -0.37 0.61 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 41 H 0.09 0.97 6.24 -51.93 -0.32 0.65 16 42 H 0.07 0.65 4.93 -51.93 -0.26 0.40 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.07 6.24 -51.93 -0.32 0.75 16 45 H 0.06 1.39 6.63 -51.94 -0.34 1.05 16 46 H 0.03 0.61 5.58 -51.93 -0.29 0.32 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.04 0.68 6.83 -51.93 -0.35 0.33 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -32.44 379.01 -8.70 -41.14 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.51 Total: -0.56 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.38 Total: 5.65 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.48 Total: -61.11 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.44 -8.70 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.655 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds