Wall clock time and date at job start Tue Mar 31 2020 22:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46879 * 2 1 4 4 N 1.32147 * 120.53546 * 90.00113 * 3 2 1 5 5 C 1.31869 * 120.96485 * 179.97438 * 4 3 2 6 6 N 1.31871 * 122.10047 * 359.97438 * 5 4 3 7 7 C 1.32146 * 120.96095 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.53595 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47008 * 89.99595 * 8 7 6 10 10 C 1.39946 * 118.92800 * 359.97438 * 7 6 5 11 11 C 1.47834 * 120.93913 * 180.02562 * 10 7 6 12 12 O 1.21557 * 119.99770 * 90.00270 * 11 10 7 13 13 N 1.34773 * 120.00174 * 269.99787 * 11 10 7 14 14 C 1.46500 * 119.99771 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00053 * 180.02562 * 13 11 10 16 16 H 1.08998 * 110.64310 * 359.30336 * 15 13 11 17 17 C 1.55152 * 110.72041 * 122.44428 * 15 13 11 18 18 C 1.55126 * 101.48930 * 153.73505 * 17 15 13 19 19 N 1.47431 * 104.94056 * 323.22217 * 18 17 15 20 20 C 1.36932 * 125.64953 * 204.03713 * 19 18 17 21 21 H 1.07994 * 120.00121 * 161.47689 * 20 19 18 22 22 C 1.38815 * 120.00038 * 341.47682 * 20 19 18 23 23 N 1.31611 * 119.99950 * 157.63350 * 22 20 19 24 24 Si 1.86805 * 119.99999 * 337.63783 * 22 20 19 25 25 H 1.48502 * 109.46989 * 84.53278 * 24 22 20 26 26 H 1.48494 * 109.46937 * 204.53330 * 24 22 20 27 27 H 1.48501 * 109.46643 * 324.53415 * 24 22 20 28 28 C 1.47023 * 108.70138 * 24.00396 * 19 18 17 29 29 H 1.09001 * 109.47287 * 60.00262 * 1 2 3 30 30 H 1.09002 * 109.46414 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47303 * 299.99828 * 1 2 3 32 32 H 1.09000 * 109.47519 * 240.00024 * 2 1 3 33 33 H 1.09001 * 109.47287 * 119.99738 * 2 1 3 34 34 H 1.08002 * 118.95548 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47133 * 209.99190 * 8 7 6 36 36 H 1.08996 * 109.47074 * 329.99811 * 8 7 6 37 37 H 1.09000 * 109.46980 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.47338 * 299.99952 * 9 8 7 39 39 H 1.08996 * 109.47027 * 60.00187 * 9 8 7 40 40 H 1.08999 * 109.47266 * 89.99749 * 14 13 11 41 41 H 1.09005 * 109.47009 * 209.99342 * 14 13 11 42 42 H 1.08995 * 109.47134 * 329.99397 * 14 13 11 43 43 H 1.09002 * 111.00866 * 271.93987 * 17 15 13 44 44 H 1.09002 * 111.00688 * 35.78864 * 17 15 13 45 45 H 1.08989 * 110.42301 * 204.29561 * 18 17 15 46 46 H 1.08996 * 110.20772 * 82.03748 * 18 17 15 47 47 H 0.97000 * 119.99997 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.88086 * 239.52411 * 28 19 18 49 49 H 1.09002 * 110.01479 * 118.43006 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2561 2.0538 1.1382 5 6 2.6960 3.2969 1.1481 6 7 2.9333 3.9652 0.0363 7 6 2.7368 3.4091 -1.1463 8 6 3.0105 4.1818 -2.4108 9 6 4.4631 3.9621 -2.8384 10 6 2.2703 2.0910 -1.2053 11 6 2.0356 1.4253 -2.5043 12 8 2.9315 0.8003 -3.0375 13 7 0.8283 1.5112 -3.0971 14 6 -0.2512 2.2648 -2.4546 15 6 0.5956 0.8510 -4.3841 16 1 1.4996 0.3477 -4.7268 17 6 -0.5850 -0.1504 -4.2817 18 6 -1.0885 -0.1855 -5.7486 19 7 -0.9336 1.1970 -6.2368 20 6 -1.6391 1.7643 -7.2641 21 1 -1.6821 2.8391 -7.3609 22 6 -2.2990 0.9580 -8.1813 23 7 -3.3050 1.4416 -8.8787 24 14 -1.7594 -0.8137 -8.4257 25 1 -2.4071 -1.6739 -7.4031 26 1 -2.1584 -1.2701 -9.7813 27 1 -0.2837 -0.9051 -8.2869 28 6 0.1032 1.8659 -5.4372 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.8675 3.7834 2.0970 35 1 2.3432 3.8354 -3.1999 36 1 2.8412 5.2435 -2.2317 37 1 4.6610 4.5206 -3.7532 38 1 5.1305 4.3084 -2.0493 39 1 4.6325 2.9004 -3.0175 40 1 -0.2173 3.3026 -2.7862 41 1 -1.2118 1.8275 -2.7272 42 1 -0.1280 2.2249 -1.3724 43 1 -0.2376 -1.1327 -3.9614 44 1 -1.3594 0.2255 -3.6130 45 1 -2.1357 -0.4853 -5.7842 46 1 -0.4775 -0.8673 -6.3401 47 1 -3.7664 0.8781 -9.5193 48 1 -0.3180 2.7402 -4.9409 49 1 0.9320 2.1670 -6.0779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033435231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:12 Heat of formation + Delta-G solvation = 20.255319 kcal Electronic energy + Delta-G solvation = -30228.449566 eV Core-core repulsion = 26383.737404 eV Total energy + Delta-G solvation = -3844.712162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 29.17 seconds Orbital eigenvalues (eV) -42.69125 -40.97205 -39.16825 -36.85551 -36.45229 -35.35503 -34.21667 -32.64941 -31.98236 -31.24816 -29.76917 -28.07761 -26.86696 -26.40886 -25.78052 -24.16885 -22.81341 -22.32459 -21.91553 -20.44788 -19.22160 -18.98799 -18.72089 -17.76587 -17.51881 -17.15191 -16.49512 -16.02888 -15.91344 -15.42517 -15.39834 -15.27172 -15.08748 -14.87459 -14.69255 -14.51319 -14.30912 -13.90705 -13.88018 -13.80400 -13.40893 -13.33953 -13.06813 -12.99639 -12.86219 -12.66368 -12.60351 -12.48747 -12.44100 -12.11867 -12.10139 -11.97693 -11.66280 -11.48589 -11.45425 -11.12475 -10.82036 -10.56836 -10.40464 -9.82196 -9.08438 -8.18403 -5.45913 -0.46614 -0.16821 1.22843 1.30263 1.40953 1.48338 1.68470 2.40781 2.50589 2.82978 2.89980 3.03460 3.08826 3.18592 3.37004 3.66089 3.72840 3.77997 3.97156 4.03319 4.05389 4.11624 4.17777 4.19340 4.24796 4.33229 4.34910 4.39522 4.45936 4.55590 4.67058 4.73411 4.79554 4.87223 4.88440 4.91435 4.94308 4.94694 4.99740 5.01671 5.11772 5.13459 5.21710 5.30466 5.38056 5.65603 5.78079 6.09200 6.14805 6.73012 6.84993 6.91071 7.51753 8.06546 9.01096 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.003474 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.473122 B = 8058.297534 C = 8736.477964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C 0.215 3.785 4 N -0.527 5.527 5 C 0.312 3.688 6 N -0.529 5.529 7 C 0.214 3.786 8 C -0.083 4.083 9 C -0.140 4.140 10 C -0.238 4.238 11 C 0.584 3.416 12 O -0.560 6.560 13 N -0.583 5.583 14 C 0.068 3.932 15 C 0.140 3.860 16 H 0.099 0.901 17 C -0.122 4.122 18 C 0.104 3.896 19 N -0.622 5.622 20 C -0.234 4.234 21 H 0.062 0.938 22 C -0.032 4.032 23 N -0.954 5.954 24 Si 0.941 3.059 25 H -0.263 1.263 26 H -0.309 1.309 27 H -0.274 1.274 28 C 0.129 3.871 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.236 0.764 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.023 0.977 47 H 0.263 0.737 48 H 0.047 0.953 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 0.951 23.514 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C 0.068 3.932 4 N -0.242 5.242 5 C 0.025 3.975 6 N -0.243 5.243 7 C 0.068 3.932 8 C -0.121 4.121 9 C -0.198 4.198 10 C -0.245 4.245 11 C 0.370 3.630 12 O -0.438 6.438 13 N -0.314 5.314 14 C -0.073 4.073 15 C 0.035 3.965 16 H 0.117 0.883 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.350 5.350 20 C -0.362 4.362 21 H 0.080 0.920 22 C -0.227 4.227 23 N -0.600 5.600 24 Si 0.770 3.230 25 H -0.189 1.189 26 H -0.238 1.238 27 H -0.200 1.200 28 C 0.003 3.997 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.268 1.111 23.953 26.494 hybrid contribution -0.049 -0.932 -1.689 1.930 sum 11.219 0.179 22.264 24.931 Atomic orbital electron populations 1.21849 0.91763 1.04171 1.02754 1.20719 0.98377 0.88431 1.04597 1.22083 0.87766 0.96935 0.86433 1.68395 1.15478 1.11323 1.28961 1.25889 0.87085 0.86558 0.97931 1.68383 1.18713 1.38709 0.98462 1.21992 0.87013 0.89105 0.95114 1.20708 0.99159 1.01379 0.90899 1.21652 0.93851 1.01763 1.02512 1.21303 1.09871 0.97898 0.95435 1.17920 0.81913 0.79239 0.83891 1.90797 1.43893 1.43521 1.65632 1.47695 1.11519 1.51576 1.20609 1.22075 0.90745 0.96601 0.97913 1.21933 0.99284 0.93020 0.82214 0.88270 1.23087 0.97354 1.00038 0.95616 1.22090 0.99192 0.86637 0.94211 1.44767 1.42454 1.10549 1.37188 1.18543 1.23002 0.91834 1.02828 0.92035 1.25575 0.97725 1.01665 0.97703 1.69948 1.21731 1.38752 1.29595 0.86034 0.78736 0.82135 0.76103 1.18881 1.23803 1.19974 1.21655 0.90556 0.95270 0.92200 0.92246 0.89743 0.91464 0.90652 0.87772 0.74816 0.90486 0.87300 0.89949 0.91628 0.93976 0.91611 0.89083 0.89987 0.88335 0.88758 0.93081 0.95984 0.92805 0.93470 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.68 71.98 0.70 -1.38 16 2 C -0.08 -1.44 5.91 29.85 0.18 -1.26 16 3 C 0.21 4.42 5.71 42.93 0.25 4.67 16 4 N -0.53 -10.10 10.36 -187.05 -1.94 -12.04 16 5 C 0.31 5.18 12.27 180.84 2.22 7.40 16 6 N -0.53 -10.54 10.36 -187.05 -1.94 -12.48 16 7 C 0.21 4.67 6.12 42.93 0.26 4.93 16 8 C -0.08 -1.67 5.91 29.85 0.18 -1.50 16 9 C -0.14 -2.78 9.90 71.98 0.71 -2.07 16 10 C -0.24 -5.46 3.94 -19.91 -0.08 -5.54 16 11 C 0.58 15.48 4.37 86.78 0.38 15.85 16 12 O -0.56 -18.73 16.40 -3.90 -0.06 -18.80 16 13 N -0.58 -14.38 2.87 -819.39 -2.36 -16.73 16 14 C 0.07 1.35 7.66 127.77 0.98 2.33 16 15 C 0.14 4.19 3.35 46.18 0.15 4.35 16 16 H 0.10 3.27 6.99 -2.39 -0.02 3.25 16 17 C -0.12 -3.47 6.64 32.06 0.21 -3.25 16 18 C 0.10 4.10 4.70 86.93 0.41 4.51 16 19 N -0.62 -28.60 3.21 -691.55 -2.22 -30.81 16 20 C -0.23 -13.10 10.57 84.03 0.89 -12.21 16 21 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 22 C -0.03 -1.84 5.43 84.86 0.46 -1.38 16 23 N -0.95 -59.21 13.97 21.65 0.30 -58.91 16 24 Si 0.94 46.04 24.27 68.60 1.67 47.71 16 25 H -0.26 -11.85 6.49 99.48 0.65 -11.20 16 26 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 27 H -0.27 -13.18 6.66 99.48 0.66 -12.52 16 28 C 0.13 4.78 6.88 86.73 0.60 5.38 16 29 H 0.06 0.91 4.99 -2.39 -0.01 0.90 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.51 7.18 -2.39 -0.02 1.49 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.08 1.68 7.18 -2.39 -0.02 1.67 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.03 8.07 -2.39 -0.02 1.01 16 40 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 41 H 0.09 1.77 6.24 -2.38 -0.01 1.75 16 42 H 0.08 1.40 4.93 -2.39 -0.01 1.39 16 43 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.09 2.35 6.24 -2.39 -0.01 2.34 16 45 H 0.05 2.15 6.63 -2.39 -0.02 2.13 16 46 H 0.02 0.92 5.58 -2.39 -0.01 0.91 16 47 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.05 1.67 6.83 -2.39 -0.02 1.65 16 49 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -71.31 379.01 2.80 -68.51 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.85 Total: 12.72 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 8.49 Total: 20.83 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -8.15 Total: -130.97 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.80 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.67 Total: 47.71 kcal Total: -71.31 2.80 -68.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.766 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.17 seconds