Wall clock time and date at job start Tue Mar 31 2020 16:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30790 * 125.72278 * 2 1 4 4 C 1.34432 * 109.31654 * 179.97438 * 3 2 1 5 5 C 1.33856 * 107.80066 * 359.97438 * 4 3 2 6 6 N 1.34406 * 125.72424 * 180.02562 * 2 1 3 7 7 C 1.46469 * 128.44119 * 0.15104 * 6 2 1 8 8 C 1.53289 * 108.69087 * 162.64460 * 7 6 2 9 9 H 1.08998 * 109.39017 * 290.72037 * 8 7 6 10 10 C 1.50702 * 109.42989 * 170.84477 * 8 7 6 11 11 O 1.21273 * 120.00255 * 359.75486 * 10 8 7 12 12 N 1.34778 * 119.99491 * 179.76057 * 10 8 7 13 13 C 1.46508 * 119.99564 * 179.97438 * 12 10 8 14 14 C 1.53000 * 110.91268 * 297.54612 * 13 12 10 15 15 C 1.55157 * 111.00230 * 173.64764 * 13 12 10 16 16 C 1.54331 * 103.02099 * 277.23063 * 15 13 12 17 17 N 1.47021 * 107.26526 * 338.14342 * 16 15 13 18 18 C 1.36943 * 125.64958 * 178.84865 * 17 16 15 19 19 H 1.08002 * 119.99788 * 179.68595 * 18 17 16 20 20 C 1.38811 * 119.99622 * 359.96780 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47423 * 108.70520 * 358.58242 * 17 16 15 27 27 C 1.53119 * 109.70744 * 50.77053 * 8 7 6 28 28 C 1.50711 * 128.68084 * 180.08339 * 5 4 3 29 29 H 1.08992 * 109.47459 * 269.95783 * 1 2 3 30 30 H 1.09006 * 109.46739 * 29.96279 * 1 2 3 31 31 H 1.09003 * 109.47077 * 149.95516 * 1 2 3 32 32 H 1.07997 * 126.09636 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.60207 * 42.88055 * 7 6 2 34 34 H 1.09000 * 109.60098 * 282.40228 * 7 6 2 35 35 H 0.96996 * 120.00615 * 359.97438 * 12 10 8 36 36 H 1.08998 * 109.46910 * 182.45312 * 14 13 12 37 37 H 1.09000 * 109.47257 * 302.44780 * 14 13 12 38 38 H 1.08996 * 109.47188 * 62.45189 * 14 13 12 39 39 H 1.09003 * 110.72238 * 35.78986 * 15 13 12 40 40 H 1.08998 * 110.72154 * 158.88563 * 15 13 12 41 41 H 1.09003 * 109.99500 * 218.66627 * 16 15 13 42 42 H 1.09008 * 109.77945 * 97.49669 * 16 15 13 43 43 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.36923 * 143.19518 * 26 17 16 45 45 H 1.08999 * 110.37105 * 265.52427 * 26 17 16 46 46 H 1.08997 * 109.49371 * 50.04531 * 27 8 7 47 47 H 1.08997 * 109.49371 * 170.10587 * 27 8 7 48 48 H 1.08998 * 109.74089 * 44.61967 * 28 5 4 49 49 H 1.08998 * 109.74524 * 283.90259 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8921 -2.5003 -0.0041 8 6 3.0924 -3.3502 -0.4364 9 1 3.3028 -3.1695 -1.4905 10 6 2.7735 -4.8088 -0.2317 11 8 1.6965 -5.1366 0.2192 12 7 3.6854 -5.7489 -0.5496 13 6 3.3756 -7.1669 -0.3501 14 6 3.1362 -7.4705 1.1302 15 6 4.4986 -8.0681 -0.9282 16 6 4.1431 -8.1477 -2.4279 17 7 2.7128 -7.8323 -2.5546 18 6 2.0093 -7.7736 -3.7281 19 1 0.9556 -7.5372 -3.7148 20 6 2.6494 -8.0238 -4.9342 21 7 3.9335 -8.3120 -4.9504 22 14 1.6882 -7.9514 -6.5342 23 1 1.7374 -6.5709 -7.0792 24 1 2.2872 -8.8923 -7.5145 25 1 0.2757 -8.3335 -6.2809 26 6 2.1597 -7.5958 -1.2087 27 6 4.3189 -2.9746 0.3997 28 6 4.7919 -1.5690 0.0041 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5145 32 1 4.4171 1.3395 0.0011 33 1 1.0700 -2.6454 -0.7049 34 1 1.5780 -2.7939 0.9975 35 1 4.5467 -5.4868 -0.9106 36 1 2.9512 -8.5372 1.2570 37 1 4.0155 -7.1833 1.7069 38 1 2.2716 -6.9075 1.4814 39 1 5.4756 -7.6065 -0.7850 40 1 4.4710 -9.0582 -0.4732 41 1 4.3359 -9.1526 -2.8038 42 1 4.7338 -7.4212 -2.9861 43 1 4.3808 -8.4864 -5.7932 44 1 1.4164 -6.7991 -1.2385 45 1 1.7200 -8.5113 -0.8129 46 1 4.0554 -2.9855 1.4573 47 1 5.1179 -3.6930 0.2164 48 1 5.5260 -1.2106 0.7257 49 1 5.2359 -1.5967 -0.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046569779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:24 Heat of formation + Delta-G solvation = 43.203608 kcal Electronic energy + Delta-G solvation = -29751.858801 eV Core-core repulsion = 25908.141751 eV Total energy + Delta-G solvation = -3843.717050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50178 -40.17796 -37.78678 -36.20241 -34.11926 -33.46698 -32.18437 -31.18858 -30.26166 -29.69601 -28.72578 -26.54742 -25.75388 -24.90111 -23.65026 -22.68728 -21.30741 -20.56118 -20.07658 -19.13185 -19.05060 -17.45161 -16.89183 -16.47014 -15.80768 -15.70469 -15.13845 -14.75554 -14.64587 -14.28778 -14.20166 -13.98202 -13.75334 -13.54021 -13.26925 -13.12836 -13.07397 -12.85702 -12.50892 -12.16179 -12.09609 -12.01159 -11.93421 -11.85357 -11.73428 -11.34446 -11.22321 -10.95020 -10.91680 -10.47219 -10.43909 -10.12853 -10.06116 -10.01470 -9.71124 -9.60329 -9.37009 -8.74016 -8.61363 -8.27475 -6.85433 -5.75755 -3.07880 1.94530 2.56174 2.75636 3.04076 3.33600 3.36923 3.42712 3.44136 4.11058 4.34720 4.40593 4.43699 4.46817 4.57940 4.88794 4.94898 4.99325 5.08544 5.13240 5.24906 5.29264 5.31161 5.37092 5.41531 5.47735 5.51876 5.54353 5.57460 5.65314 5.68721 5.79930 5.82928 5.92152 6.05179 6.07163 6.26192 6.31030 6.32379 6.45072 6.58436 6.67750 6.74334 7.02490 7.11617 7.49116 7.50291 7.72136 7.76763 8.01800 8.21142 8.39160 9.18769 9.78816 10.44414 11.36207 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003427 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.694494 B = 8169.047491 C = 9171.148600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.208 3.792 3 N -0.497 5.497 4 C -0.024 4.024 5 C -0.029 4.029 6 N -0.449 5.449 7 C 0.125 3.875 8 C -0.122 4.122 9 H 0.109 0.891 10 C 0.529 3.471 11 O -0.539 6.539 12 N -0.695 5.695 13 C 0.156 3.844 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.132 3.868 27 C -0.114 4.114 28 C -0.043 4.043 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.168 0.832 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 11.174 13.323 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 N -0.216 5.216 4 C -0.172 4.172 5 C -0.143 4.143 6 N -0.133 5.133 7 C 0.003 3.997 8 C -0.144 4.144 9 H 0.127 0.873 10 C 0.314 3.686 11 O -0.417 6.417 12 N -0.345 5.345 13 C 0.069 3.931 14 C -0.207 4.207 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.005 3.995 27 C -0.152 4.152 28 C -0.082 4.082 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.547 11.537 13.400 17.749 hybrid contribution 0.368 -0.757 -1.267 1.521 sum 1.915 10.780 12.133 16.343 Atomic orbital electron populations 1.20187 0.84993 1.04074 1.03471 1.23103 0.95631 0.81128 1.05485 1.70447 1.01980 1.28050 1.21142 1.21786 0.94822 0.91913 1.08662 1.21124 0.85687 0.95433 1.12071 1.45297 1.06365 1.07295 1.54304 1.21704 0.97295 0.76314 1.04426 1.21582 0.96312 0.93150 1.03339 0.87343 1.19884 0.84389 0.86622 0.77751 1.90670 1.23212 1.82509 1.45271 1.45756 1.18149 1.05993 1.64553 1.21521 0.97818 0.79298 0.94454 1.21980 1.02083 1.01924 0.94680 1.23234 0.96460 0.98564 1.00261 1.21151 0.85328 1.00358 0.87888 1.44442 1.05723 1.82309 1.00460 1.19053 0.92644 1.40553 0.82951 0.90624 1.24753 0.96110 1.01992 0.97547 1.69936 1.08262 1.54198 1.24794 0.86147 0.78952 0.77361 0.83505 1.21705 1.21649 1.20703 1.21878 0.93901 0.97740 0.85988 1.21658 0.96343 0.97184 1.00032 1.20219 0.93024 0.91764 1.03148 0.90219 0.89250 0.90697 0.81485 0.88348 0.88572 0.76726 0.91795 0.93131 0.91118 0.91779 0.90870 0.93851 0.93646 0.93832 0.92659 0.95768 0.90770 0.89822 0.89127 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.24 36.01 0.37 -0.27 16 2 C 0.21 2.65 7.94 -155.75 -1.24 1.41 16 3 N -0.50 -7.09 11.27 -11.02 -0.12 -7.21 16 4 C -0.02 -0.30 11.84 -17.95 -0.21 -0.51 16 5 C -0.03 -0.33 6.57 -81.73 -0.54 -0.87 16 6 N -0.45 -5.42 3.13 -109.43 -0.34 -5.76 16 7 C 0.13 1.43 5.39 -3.91 -0.02 1.41 16 8 C -0.12 -1.37 2.52 -91.56 -0.23 -1.60 16 9 H 0.11 1.27 8.11 -51.93 -0.42 0.85 16 10 C 0.53 7.57 6.54 -10.98 -0.07 7.50 16 11 O -0.54 -9.23 12.64 5.56 0.07 -9.16 16 12 N -0.70 -9.99 4.99 -45.62 -0.23 -10.22 16 13 C 0.16 2.53 0.82 -129.67 -0.11 2.43 16 14 C -0.15 -2.07 8.59 37.16 0.32 -1.75 16 15 C -0.15 -2.43 5.99 -24.89 -0.15 -2.58 16 16 C 0.18 4.02 5.37 -3.06 -0.02 4.01 16 17 N -0.60 -14.91 3.39 -170.06 -0.58 -15.49 16 18 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.38 10.31 55.49 0.57 -25.80 16 22 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.13 2.75 6.10 -2.53 -0.02 2.74 16 27 C -0.11 -1.00 5.23 -26.42 -0.14 -1.13 16 28 C -0.04 -0.36 6.31 -27.63 -0.17 -0.54 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 7.59 -51.93 -0.39 0.22 16 32 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 34 H 0.10 1.10 7.81 -51.93 -0.41 0.70 16 35 H 0.40 5.00 7.82 -40.82 -0.32 4.68 16 36 H 0.06 0.85 8.11 -51.93 -0.42 0.42 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 39 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 41 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 42 H 0.05 1.13 7.38 -51.92 -0.38 0.74 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.06 1.24 6.32 -51.93 -0.33 0.92 16 45 H 0.02 0.52 8.04 -51.93 -0.42 0.10 16 46 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 47 H 0.08 0.62 7.31 -51.93 -0.38 0.24 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -33.33 381.17 -10.32 -43.65 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.94 Total: 3.68 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.47 Total: 3.59 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.70 Total: -64.49 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.33 -10.32 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046569779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.852 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds