Wall clock time and date at job start Tue Mar 31 2020 16:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30790 * 125.72278 * 2 1 4 4 C 1.34432 * 109.31654 * 179.97438 * 3 2 1 5 5 C 1.33856 * 107.80066 * 359.97438 * 4 3 2 6 6 N 1.34406 * 125.72424 * 180.02562 * 2 1 3 7 7 C 1.46469 * 128.44119 * 0.15104 * 6 2 1 8 8 C 1.53289 * 108.69087 * 162.64460 * 7 6 2 9 9 H 1.08998 * 109.39017 * 290.72037 * 8 7 6 10 10 C 1.50702 * 109.42989 * 170.84477 * 8 7 6 11 11 O 1.21273 * 120.00255 * 359.75486 * 10 8 7 12 12 N 1.34778 * 119.99491 * 179.76057 * 10 8 7 13 13 C 1.46508 * 119.99564 * 179.97438 * 12 10 8 14 14 C 1.53000 * 110.91268 * 297.54612 * 13 12 10 15 15 C 1.55157 * 111.00230 * 173.64764 * 13 12 10 16 16 C 1.54331 * 103.02099 * 277.23063 * 15 13 12 17 17 N 1.47021 * 107.26526 * 338.14342 * 16 15 13 18 18 C 1.36943 * 125.64958 * 178.84865 * 17 16 15 19 19 H 1.08002 * 119.99788 * 179.68595 * 18 17 16 20 20 C 1.38811 * 119.99622 * 359.96780 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47423 * 108.70520 * 358.58242 * 17 16 15 27 27 C 1.53119 * 109.70744 * 50.77053 * 8 7 6 28 28 C 1.50711 * 128.68084 * 180.08339 * 5 4 3 29 29 H 1.08992 * 109.47459 * 269.95783 * 1 2 3 30 30 H 1.09006 * 109.46739 * 29.96279 * 1 2 3 31 31 H 1.09003 * 109.47077 * 149.95516 * 1 2 3 32 32 H 1.07997 * 126.09636 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.60207 * 42.88055 * 7 6 2 34 34 H 1.09000 * 109.60098 * 282.40228 * 7 6 2 35 35 H 0.96996 * 120.00615 * 359.97438 * 12 10 8 36 36 H 1.08998 * 109.46910 * 182.45312 * 14 13 12 37 37 H 1.09000 * 109.47257 * 302.44780 * 14 13 12 38 38 H 1.08996 * 109.47188 * 62.45189 * 14 13 12 39 39 H 1.09003 * 110.72238 * 35.78986 * 15 13 12 40 40 H 1.08998 * 110.72154 * 158.88563 * 15 13 12 41 41 H 1.09003 * 109.99500 * 218.66627 * 16 15 13 42 42 H 1.09008 * 109.77945 * 97.49669 * 16 15 13 43 43 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.36923 * 143.19518 * 26 17 16 45 45 H 1.08999 * 110.37105 * 265.52427 * 26 17 16 46 46 H 1.08997 * 109.49371 * 50.04531 * 27 8 7 47 47 H 1.08997 * 109.49371 * 170.10587 * 27 8 7 48 48 H 1.08998 * 109.74089 * 44.61967 * 28 5 4 49 49 H 1.08998 * 109.74524 * 283.90259 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8921 -2.5003 -0.0041 8 6 3.0924 -3.3502 -0.4364 9 1 3.3028 -3.1695 -1.4905 10 6 2.7735 -4.8088 -0.2317 11 8 1.6965 -5.1366 0.2192 12 7 3.6854 -5.7489 -0.5496 13 6 3.3756 -7.1669 -0.3501 14 6 3.1362 -7.4705 1.1302 15 6 4.4986 -8.0681 -0.9282 16 6 4.1431 -8.1477 -2.4279 17 7 2.7128 -7.8323 -2.5546 18 6 2.0093 -7.7736 -3.7281 19 1 0.9556 -7.5372 -3.7148 20 6 2.6494 -8.0238 -4.9342 21 7 3.9335 -8.3120 -4.9504 22 14 1.6882 -7.9514 -6.5342 23 1 1.7374 -6.5709 -7.0792 24 1 2.2872 -8.8923 -7.5145 25 1 0.2757 -8.3335 -6.2809 26 6 2.1597 -7.5958 -1.2087 27 6 4.3189 -2.9746 0.3997 28 6 4.7919 -1.5690 0.0041 29 1 -0.3634 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5133 31 1 -0.3633 -0.8896 -0.5145 32 1 4.4171 1.3395 0.0011 33 1 1.0700 -2.6454 -0.7049 34 1 1.5780 -2.7939 0.9975 35 1 4.5467 -5.4868 -0.9106 36 1 2.9512 -8.5372 1.2570 37 1 4.0155 -7.1833 1.7069 38 1 2.2716 -6.9075 1.4814 39 1 5.4756 -7.6065 -0.7850 40 1 4.4710 -9.0582 -0.4732 41 1 4.3359 -9.1526 -2.8038 42 1 4.7338 -7.4212 -2.9861 43 1 4.3808 -8.4864 -5.7932 44 1 1.4164 -6.7991 -1.2385 45 1 1.7200 -8.5113 -0.8129 46 1 4.0554 -2.9855 1.4573 47 1 5.1179 -3.6930 0.2164 48 1 5.5260 -1.2106 0.7257 49 1 5.2359 -1.5967 -0.9909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046569779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:23 Heat of formation + Delta-G solvation = 22.539985 kcal Electronic energy + Delta-G solvation = -29752.754843 eV Core-core repulsion = 25908.141751 eV Total energy + Delta-G solvation = -3844.613092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.39590 -41.39598 -39.18239 -37.21219 -35.72226 -34.36460 -33.68803 -32.36988 -31.49164 -30.78433 -30.24134 -27.51894 -27.36930 -25.96982 -25.21499 -23.54702 -22.42599 -22.02487 -21.33133 -20.42530 -19.93982 -19.00319 -18.22266 -17.47518 -17.12380 -16.79182 -16.65744 -16.22346 -15.64989 -15.61886 -15.40419 -15.02593 -14.90080 -14.64223 -14.52490 -14.12406 -13.94287 -13.88542 -13.80860 -13.53780 -13.38265 -13.23704 -13.08039 -12.90638 -12.83614 -12.78402 -12.74469 -12.21677 -12.08636 -12.04295 -11.96943 -11.94375 -11.69931 -11.51753 -10.95724 -10.72169 -10.64422 -10.50453 -9.97988 -9.14227 -8.86944 -7.87309 -5.20463 1.06123 1.42749 1.43213 1.52079 1.57973 1.68826 2.11492 2.26387 2.46606 3.23310 3.31162 3.47390 3.55519 3.58521 3.63292 3.73344 3.78759 4.03002 4.06237 4.17605 4.19946 4.25166 4.31523 4.42189 4.53976 4.64816 4.65446 4.68002 4.71118 4.82014 4.84118 4.89222 4.91425 4.94969 4.98713 5.03066 5.04972 5.09657 5.12598 5.37209 5.42288 5.45120 5.64713 5.69563 5.78363 5.82831 6.19419 6.22306 6.60243 7.10417 7.11063 7.26743 7.77288 8.40816 9.22260 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003427 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.694494 B = 8169.047491 C = 9171.148600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.191 3.809 3 N -0.530 5.530 4 C -0.046 4.046 5 C -0.031 4.031 6 N -0.453 5.453 7 C 0.129 3.871 8 C -0.112 4.112 9 H 0.105 0.895 10 C 0.528 3.472 11 O -0.569 6.569 12 N -0.693 5.693 13 C 0.168 3.832 14 C -0.138 4.138 15 C -0.128 4.128 16 C 0.184 3.816 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.068 0.932 20 C -0.056 4.056 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.127 3.873 27 C -0.107 4.107 28 C -0.038 4.038 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.186 0.814 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.005 0.995 42 H 0.019 0.981 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.115 0.885 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 11.492 14.600 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 N -0.250 5.250 4 C -0.193 4.193 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.007 3.993 8 C -0.134 4.134 9 H 0.123 0.877 10 C 0.314 3.686 11 O -0.448 6.448 12 N -0.343 5.343 13 C 0.081 3.919 14 C -0.197 4.197 15 C -0.167 4.167 16 C 0.060 3.940 17 N -0.347 5.347 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.250 4.250 21 N -0.593 5.593 22 Si 0.798 3.202 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.201 1.201 26 C 0.001 3.999 27 C -0.145 4.145 28 C -0.076 4.076 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.203 0.797 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.023 0.977 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.093 0.907 47 H 0.123 0.877 48 H 0.133 0.867 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.875 11.869 14.701 19.111 hybrid contribution -0.105 -0.856 -1.678 1.886 sum 2.769 11.013 13.023 17.279 Atomic orbital electron populations 1.20290 0.83263 1.04608 1.04445 1.23669 0.96877 0.81122 1.05371 1.70422 1.03131 1.29125 1.22320 1.22216 0.94879 0.92902 1.09273 1.21662 0.86330 0.95753 1.10778 1.45392 1.06765 1.07226 1.54302 1.21628 0.97294 0.76245 1.04161 1.21501 0.97462 0.90785 1.03647 0.87717 1.20351 0.83740 0.87724 0.76801 1.90663 1.24431 1.83188 1.46567 1.45718 1.18782 1.05255 1.64562 1.21339 0.95068 0.80316 0.95174 1.21902 1.02825 1.02343 0.92608 1.23100 0.98147 1.00034 0.95392 1.20948 0.83992 0.97206 0.91886 1.44687 1.06716 1.82208 1.01079 1.19303 0.92794 1.40370 0.84601 0.91414 1.25460 0.97072 1.02173 1.00266 1.70128 1.09298 1.54856 1.24993 0.85216 0.77964 0.77163 0.79825 1.21387 1.21697 1.20074 1.21999 0.95642 0.96916 0.85310 1.21666 0.95476 0.97930 0.99408 1.20350 0.92106 0.90650 1.04523 0.88980 0.88803 0.90024 0.79677 0.89134 0.88660 0.75408 0.90970 0.90229 0.92459 0.88175 0.89282 0.97654 0.96285 0.94341 0.94758 0.96152 0.90676 0.87741 0.86656 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.24 71.24 0.73 -0.50 16 2 C 0.19 4.81 7.94 138.25 1.10 5.91 16 3 N -0.53 -14.99 11.27 -188.77 -2.13 -17.12 16 4 C -0.05 -1.10 11.84 83.30 0.99 -0.12 16 5 C -0.03 -0.66 6.57 40.73 0.27 -0.39 16 6 N -0.45 -10.56 3.13 -500.12 -1.57 -12.13 16 7 C 0.13 2.86 5.39 86.48 0.47 3.33 16 8 C -0.11 -2.34 2.52 -11.40 -0.03 -2.37 16 9 H 0.10 2.31 8.11 -2.39 -0.02 2.29 16 10 C 0.53 14.39 6.54 87.66 0.57 14.97 16 11 O -0.57 -19.20 12.64 -3.01 -0.04 -19.24 16 12 N -0.69 -18.44 4.99 -416.64 -2.08 -20.52 16 13 C 0.17 5.14 0.82 4.99 0.00 5.14 16 14 C -0.14 -3.44 8.59 71.98 0.62 -2.82 16 15 C -0.13 -3.94 5.99 31.79 0.19 -3.75 16 16 C 0.18 8.38 5.37 86.73 0.47 8.85 16 17 N -0.62 -31.15 3.39 -691.96 -2.35 -33.50 16 18 C -0.24 -13.62 10.28 84.03 0.86 -12.76 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.06 -3.16 5.49 84.86 0.47 -2.69 16 21 N -0.94 -54.88 10.31 21.65 0.22 -54.66 16 22 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.13 5.33 6.10 86.86 0.53 5.86 16 27 C -0.11 -1.54 5.23 30.80 0.16 -1.38 16 28 C -0.04 -0.52 6.31 30.01 0.19 -0.33 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.08 1.33 7.59 -2.39 -0.02 1.31 16 32 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.09 2.12 7.72 -2.39 -0.02 2.10 16 34 H 0.10 2.13 7.81 -2.39 -0.02 2.11 16 35 H 0.41 9.08 7.82 -92.71 -0.73 8.36 16 36 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.62 6.54 -2.39 -0.02 1.60 16 39 H 0.10 2.40 8.05 -2.39 -0.02 2.38 16 40 H 0.09 2.50 8.01 -2.39 -0.02 2.48 16 41 H 0.01 0.27 7.51 -2.39 -0.02 0.26 16 42 H 0.02 0.95 7.38 -2.38 -0.02 0.93 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.03 1.57 6.32 -2.39 -0.02 1.55 16 45 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 46 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 47 H 0.10 1.11 7.31 -2.39 -0.02 1.09 16 48 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.61 381.17 1.90 -72.71 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.23 Total: 19.73 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 7.58 Total: 16.94 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -7.90 Total: -137.92 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.04 Total: -19.24 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.61 1.90 -72.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046569779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.251 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds