Wall clock time and date at job start Tue Mar 31 2020 21:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47202 * 2 1 4 4 C 1.38553 * 120.01828 * 124.99812 * 3 2 1 5 5 C 1.40077 * 117.81663 * 180.02562 * 4 3 2 6 6 C 1.48135 * 121.13984 * 179.97438 * 5 4 3 7 7 O 1.21518 * 119.99556 * 186.05930 * 6 5 4 8 8 N 1.34776 * 120.00257 * 6.06727 * 6 5 4 9 9 C 1.46505 * 119.99769 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.20688 * 35.63663 * 9 8 6 11 11 C 1.50123 * 109.20697 * 155.00034 * 9 8 6 12 12 C 1.52526 * 105.41600 * 218.02537 * 11 9 8 13 13 C 1.46246 * 114.27868 * 270.59438 * 12 11 9 14 14 N 1.50167 * 107.53100 * 58.40658 * 13 12 11 15 15 C 1.36937 * 120.53928 * 109.56664 * 14 13 12 16 16 H 1.07997 * 120.00092 * 322.52882 * 15 14 13 17 17 C 1.38814 * 119.99957 * 142.53396 * 15 14 13 18 18 N 1.31613 * 119.99961 * 158.31252 * 17 15 14 19 19 Si 1.86800 * 119.99871 * 338.30180 * 17 15 14 20 20 H 1.48505 * 109.46785 * 95.32394 * 19 17 15 21 21 H 1.48502 * 109.47337 * 215.32104 * 19 17 15 22 22 H 1.48498 * 109.47528 * 335.32488 * 19 17 15 23 23 C 1.43438 * 118.92386 * 289.58918 * 14 13 12 24 24 C 1.54843 * 109.20585 * 276.32129 * 9 8 6 25 25 C 1.39759 * 117.70719 * 0.02562 * 5 4 3 26 26 C 1.50706 * 120.17032 * 179.97438 * 25 5 4 27 27 N 1.31889 * 119.66097 * 359.97438 * 25 5 4 28 28 N 1.28285 * 122.32814 * 0.02562 * 27 25 5 29 29 H 1.09006 * 109.46710 * 60.00801 * 1 2 3 30 30 H 1.09001 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47500 * 300.00657 * 1 2 3 32 32 H 1.08997 * 109.47500 * 239.99343 * 2 1 3 33 33 H 1.09000 * 109.46636 * 119.99907 * 2 1 3 34 34 H 1.07999 * 121.08613 * 359.97438 * 4 3 2 35 35 H 0.96990 * 120.00208 * 359.97438 * 8 6 5 36 36 H 1.08997 * 110.24839 * 336.99609 * 11 9 8 37 37 H 1.08993 * 110.25049 * 99.05169 * 11 9 8 38 38 H 1.09002 * 108.52574 * 31.83373 * 12 11 9 39 39 H 1.08997 * 108.52551 * 149.50890 * 12 11 9 40 40 H 1.08991 * 109.84603 * 177.91225 * 13 12 11 41 41 H 1.08996 * 109.84419 * 298.83557 * 13 12 11 42 42 H 0.97007 * 120.00166 * 179.97438 * 18 17 15 43 43 H 1.09001 * 108.15912 * 213.28695 * 23 14 13 44 44 H 1.08997 * 108.16242 * 330.06342 * 23 14 13 45 45 H 1.08998 * 109.36179 * 320.99567 * 24 9 8 46 46 H 1.09001 * 109.35867 * 80.58678 * 24 9 8 47 47 H 1.09008 * 109.46968 * 276.03605 * 26 25 5 48 48 H 1.08999 * 109.47375 * 36.03499 * 26 25 5 49 49 H 1.09001 * 109.47160 * 156.03780 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9121 1.8449 0.9827 5 6 3.3492 3.1750 0.9390 6 6 4.2893 3.7062 1.9531 7 8 4.5692 4.8886 1.9616 8 7 4.8342 2.8780 2.8661 9 6 5.7644 3.4034 3.8687 10 1 5.4488 4.4050 4.1607 11 6 5.7480 2.5090 5.0743 12 6 5.8595 3.4440 6.2742 13 6 7.2327 3.7303 6.6878 14 7 7.9408 4.3415 5.5131 15 6 8.2864 5.6665 5.5212 16 1 7.6251 6.3943 5.9676 17 6 9.4867 6.0742 4.9555 18 7 9.6430 7.3238 4.5729 19 14 10.8802 4.8494 4.7376 20 1 10.8379 4.2911 3.3621 21 1 12.1798 5.5345 4.9539 22 1 10.7307 3.7488 5.7233 23 6 8.2490 3.5148 4.3820 24 6 7.1850 3.4761 3.2569 25 6 2.8669 3.9838 -0.0937 26 6 3.3003 5.4237 -0.1934 27 7 2.0304 3.4805 -0.9805 28 7 1.6339 2.2613 -0.9349 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2491 1.1722 1.7575 35 1 4.6106 1.9343 2.8595 36 1 4.8130 1.9505 5.1169 37 1 6.5965 1.8254 5.0486 38 1 5.3691 4.3854 6.0265 39 1 5.3340 2.9920 7.1154 40 1 7.2292 4.4307 7.5230 41 1 7.7309 2.8065 6.9818 42 1 10.4819 7.6088 4.1779 43 1 9.1868 3.8650 3.9508 44 1 8.4007 2.4956 4.7374 45 1 7.3538 2.6005 2.6300 46 1 7.2704 4.3759 2.6477 47 1 2.6767 6.0368 0.4574 48 1 4.3424 5.5116 0.1139 49 1 3.1953 5.7643 -1.2235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052588731.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:55 Heat of formation + Delta-G solvation = 46.804706 kcal Electronic energy + Delta-G solvation = -29247.672026 eV Core-core repulsion = 25404.111131 eV Total energy + Delta-G solvation = -3843.560895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -41.61474 -39.80871 -38.10557 -35.65191 -34.91158 -33.84520 -33.00513 -31.92873 -31.30310 -30.58610 -28.03241 -26.60470 -25.98035 -24.40581 -23.75191 -23.38368 -22.49769 -20.84936 -20.23649 -19.60518 -17.89227 -17.68245 -16.59689 -16.07215 -15.96839 -15.84006 -15.43618 -15.25833 -14.78502 -14.53746 -14.38301 -14.04898 -13.99210 -13.50664 -13.30141 -13.14875 -13.09872 -12.65576 -12.55693 -12.30444 -12.18756 -12.00143 -11.93190 -11.88062 -11.60033 -11.13382 -11.05289 -10.89807 -10.59332 -10.53021 -10.48548 -10.40036 -10.25821 -10.09829 -9.73691 -9.71548 -9.55220 -9.48688 -8.90486 -8.46279 -6.82648 -5.98178 -3.41607 0.09066 0.56923 2.66554 2.96407 3.30613 3.36698 3.45489 3.49841 3.61572 3.93961 4.10248 4.29451 4.47596 4.51791 4.68844 4.76842 4.82220 4.84974 5.06707 5.16149 5.18995 5.23346 5.33979 5.36113 5.39852 5.46023 5.62902 5.66250 5.70251 5.72382 5.80817 5.86089 5.88676 5.95261 6.00911 6.12728 6.19765 6.25241 6.31668 6.48282 6.54377 6.62805 6.68976 6.77112 6.83859 6.91530 7.43441 8.07298 8.12020 8.35432 8.42262 8.99210 9.71247 10.12677 11.17208 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003005 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.252739 B = 9315.944404 C =10092.719430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.056 3.944 4 C -0.083 4.083 5 C -0.125 4.125 6 C 0.553 3.447 7 O -0.503 6.503 8 N -0.718 5.718 9 C 0.155 3.845 10 H 0.100 0.900 11 C -0.120 4.120 12 C -0.131 4.131 13 C 0.136 3.864 14 N -0.601 5.601 15 C -0.267 4.267 16 H 0.077 0.923 17 C 0.037 3.963 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.153 3.847 24 C -0.149 4.149 25 C 0.119 3.881 26 C -0.108 4.108 27 N -0.242 5.242 28 N -0.223 5.223 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.392 0.608 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.043 0.957 44 H 0.030 0.970 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 -16.906 -5.314 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.089 4.089 4 C -0.113 4.113 5 C -0.139 4.139 6 C 0.337 3.663 7 O -0.378 6.378 8 N -0.369 5.369 9 C 0.052 3.948 10 H 0.118 0.882 11 C -0.158 4.158 12 C -0.170 4.170 13 C 0.012 3.988 14 N -0.324 5.324 15 C -0.395 4.395 16 H 0.095 0.905 17 C -0.164 4.164 18 N -0.538 5.538 19 Si 0.712 3.288 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.196 1.196 23 C 0.024 3.976 24 C -0.191 4.191 25 C -0.025 4.025 26 C -0.166 4.166 27 N -0.085 5.085 28 N -0.065 5.065 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.126 0.874 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.791 -15.598 -6.667 23.176 hybrid contribution 1.620 -1.388 0.961 2.340 sum -14.172 -16.987 -5.706 22.846 Atomic orbital electron populations 1.21715 0.93632 1.02201 1.02938 1.20447 0.97390 0.88929 1.03809 1.22828 0.94974 0.98762 0.92313 1.22530 0.95107 0.95075 0.98581 1.21278 0.99696 0.94730 0.98201 1.17886 0.80592 0.86572 0.81224 1.90836 1.60782 1.15195 1.71014 1.46392 1.46705 1.11278 1.32556 1.21320 0.88609 0.98930 0.85893 0.88243 1.21315 1.01404 0.98057 0.95030 1.20870 1.00273 0.99226 0.96629 1.20442 0.90769 0.96709 0.90873 1.44214 1.69179 1.08188 1.10805 1.18724 1.00964 0.81560 1.38288 0.90526 1.25474 0.97346 0.95286 0.98263 1.69869 1.25794 1.16848 1.41318 0.86858 0.82473 0.81851 0.77602 1.21520 1.23091 1.19572 1.20627 0.95193 0.93475 0.88274 1.23238 0.94792 1.01181 0.99888 1.23195 0.91010 0.98910 0.89356 1.21017 1.04768 0.87512 1.03258 1.73089 1.08956 1.05277 1.21129 1.72745 1.17230 0.97575 1.18993 0.91341 0.91825 0.92747 0.89320 0.89843 0.83045 0.77400 0.91981 0.90754 0.91554 0.93248 0.91287 0.95015 0.92708 0.93950 0.95132 0.93122 0.91410 0.89264 0.87384 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.77 37.16 0.36 -0.56 16 2 C -0.07 -0.42 6.35 -27.89 -0.18 -0.59 16 3 C 0.06 0.54 6.25 -82.46 -0.52 0.03 16 4 C -0.08 -0.77 9.29 -38.78 -0.36 -1.13 16 5 C -0.12 -1.53 5.92 -104.58 -0.62 -2.15 16 6 C 0.55 7.95 7.68 -12.20 -0.09 7.86 16 7 O -0.50 -9.20 13.19 5.35 0.07 -9.13 16 8 N -0.72 -8.90 4.93 -55.10 -0.27 -9.17 16 9 C 0.15 2.41 2.22 -68.39 -0.15 2.26 16 10 H 0.10 1.93 6.27 -51.93 -0.33 1.60 16 11 C -0.12 -1.56 5.34 -28.40 -0.15 -1.71 16 12 C -0.13 -1.95 5.20 -30.18 -0.16 -2.10 16 13 C 0.14 2.44 6.11 -5.20 -0.03 2.41 16 14 N -0.60 -13.53 2.19 -175.08 -0.38 -13.91 16 15 C -0.27 -7.30 9.97 -15.06 -0.15 -7.45 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 17 C 0.04 1.06 5.33 -17.43 -0.09 0.97 16 18 N -0.90 -27.46 13.97 55.49 0.78 -26.68 16 19 Si 0.88 22.16 25.02 -169.99 -4.25 17.91 16 20 H -0.29 -7.08 6.74 56.52 0.38 -6.69 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.15 3.17 4.20 -4.66 -0.02 3.15 16 24 C -0.15 -2.73 5.98 -24.75 -0.15 -2.88 16 25 C 0.12 1.61 6.91 -82.00 -0.57 1.04 16 26 C -0.11 -1.39 8.99 36.01 0.32 -1.06 16 27 N -0.24 -3.39 11.42 33.81 0.39 -3.00 16 28 N -0.22 -2.82 11.04 33.57 0.37 -2.45 16 29 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.33 7.92 -51.93 -0.41 -0.08 16 34 H 0.15 0.83 6.60 -52.49 -0.35 0.49 16 35 H 0.39 3.38 6.70 -40.82 -0.27 3.11 16 36 H 0.06 0.63 7.85 -51.93 -0.41 0.23 16 37 H 0.07 0.96 6.28 -51.93 -0.33 0.63 16 38 H 0.07 1.12 6.93 -51.93 -0.36 0.76 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.26 7.99 -51.93 -0.42 0.85 16 41 H 0.03 0.53 8.13 -51.93 -0.42 0.10 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.04 1.00 2.93 -51.93 -0.15 0.85 16 44 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 48 H 0.11 1.58 5.92 -51.93 -0.31 1.27 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -33.37 378.06 -7.63 -41.00 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.48 Total: 1.66 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.55 Total: -1.92 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.88 Total: -55.22 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.25 Total: 17.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.37 -7.63 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052588731.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.806 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds