Wall clock time and date at job start Tue Mar 31 2020 21:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47202 * 2 1 4 4 C 1.38553 * 120.01828 * 124.99812 * 3 2 1 5 5 C 1.40077 * 117.81663 * 180.02562 * 4 3 2 6 6 C 1.48135 * 121.13984 * 179.97438 * 5 4 3 7 7 O 1.21518 * 119.99556 * 186.05930 * 6 5 4 8 8 N 1.34776 * 120.00257 * 6.06727 * 6 5 4 9 9 C 1.46505 * 119.99769 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.20688 * 35.63663 * 9 8 6 11 11 C 1.50123 * 109.20697 * 155.00034 * 9 8 6 12 12 C 1.52526 * 105.41600 * 218.02537 * 11 9 8 13 13 C 1.46246 * 114.27868 * 270.59438 * 12 11 9 14 14 N 1.50167 * 107.53100 * 58.40658 * 13 12 11 15 15 C 1.36937 * 120.53928 * 109.56664 * 14 13 12 16 16 H 1.07997 * 120.00092 * 322.52882 * 15 14 13 17 17 C 1.38814 * 119.99957 * 142.53396 * 15 14 13 18 18 N 1.31613 * 119.99961 * 158.31252 * 17 15 14 19 19 Si 1.86800 * 119.99871 * 338.30180 * 17 15 14 20 20 H 1.48505 * 109.46785 * 95.32394 * 19 17 15 21 21 H 1.48502 * 109.47337 * 215.32104 * 19 17 15 22 22 H 1.48498 * 109.47528 * 335.32488 * 19 17 15 23 23 C 1.43438 * 118.92386 * 289.58918 * 14 13 12 24 24 C 1.54843 * 109.20585 * 276.32129 * 9 8 6 25 25 C 1.39759 * 117.70719 * 0.02562 * 5 4 3 26 26 C 1.50706 * 120.17032 * 179.97438 * 25 5 4 27 27 N 1.31889 * 119.66097 * 359.97438 * 25 5 4 28 28 N 1.28285 * 122.32814 * 0.02562 * 27 25 5 29 29 H 1.09006 * 109.46710 * 60.00801 * 1 2 3 30 30 H 1.09001 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47500 * 300.00657 * 1 2 3 32 32 H 1.08997 * 109.47500 * 239.99343 * 2 1 3 33 33 H 1.09000 * 109.46636 * 119.99907 * 2 1 3 34 34 H 1.07999 * 121.08613 * 359.97438 * 4 3 2 35 35 H 0.96990 * 120.00208 * 359.97438 * 8 6 5 36 36 H 1.08997 * 110.24839 * 336.99609 * 11 9 8 37 37 H 1.08993 * 110.25049 * 99.05169 * 11 9 8 38 38 H 1.09002 * 108.52574 * 31.83373 * 12 11 9 39 39 H 1.08997 * 108.52551 * 149.50890 * 12 11 9 40 40 H 1.08991 * 109.84603 * 177.91225 * 13 12 11 41 41 H 1.08996 * 109.84419 * 298.83557 * 13 12 11 42 42 H 0.97007 * 120.00166 * 179.97438 * 18 17 15 43 43 H 1.09001 * 108.15912 * 213.28695 * 23 14 13 44 44 H 1.08997 * 108.16242 * 330.06342 * 23 14 13 45 45 H 1.08998 * 109.36179 * 320.99567 * 24 9 8 46 46 H 1.09001 * 109.35867 * 80.58678 * 24 9 8 47 47 H 1.09008 * 109.46968 * 276.03605 * 26 25 5 48 48 H 1.08999 * 109.47375 * 36.03499 * 26 25 5 49 49 H 1.09001 * 109.47160 * 156.03780 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9121 1.8449 0.9827 5 6 3.3492 3.1750 0.9390 6 6 4.2893 3.7062 1.9531 7 8 4.5692 4.8886 1.9616 8 7 4.8342 2.8780 2.8661 9 6 5.7644 3.4034 3.8687 10 1 5.4488 4.4050 4.1607 11 6 5.7480 2.5090 5.0743 12 6 5.8595 3.4440 6.2742 13 6 7.2327 3.7303 6.6878 14 7 7.9408 4.3415 5.5131 15 6 8.2864 5.6665 5.5212 16 1 7.6251 6.3943 5.9676 17 6 9.4867 6.0742 4.9555 18 7 9.6430 7.3238 4.5729 19 14 10.8802 4.8494 4.7376 20 1 10.8379 4.2911 3.3621 21 1 12.1798 5.5345 4.9539 22 1 10.7307 3.7488 5.7233 23 6 8.2490 3.5148 4.3820 24 6 7.1850 3.4761 3.2569 25 6 2.8669 3.9838 -0.0937 26 6 3.3003 5.4237 -0.1934 27 7 2.0304 3.4805 -0.9805 28 7 1.6339 2.2613 -0.9349 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.2491 1.1722 1.7575 35 1 4.6106 1.9343 2.8595 36 1 4.8130 1.9505 5.1169 37 1 6.5965 1.8254 5.0486 38 1 5.3691 4.3854 6.0265 39 1 5.3340 2.9920 7.1154 40 1 7.2292 4.4307 7.5230 41 1 7.7309 2.8065 6.9818 42 1 10.4819 7.6088 4.1779 43 1 9.1868 3.8650 3.9508 44 1 8.4007 2.4956 4.7374 45 1 7.3538 2.6005 2.6300 46 1 7.2704 4.3759 2.6477 47 1 2.6767 6.0368 0.4574 48 1 4.3424 5.5116 0.1139 49 1 3.1953 5.7643 -1.2235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052588731.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:46 Heat of formation + Delta-G solvation = 23.133790 kcal Electronic energy + Delta-G solvation = -29248.698474 eV Core-core repulsion = 25404.111131 eV Total energy + Delta-G solvation = -3844.587343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 13.85 seconds Orbital eigenvalues (eV) -42.54436 -40.98443 -39.48279 -36.66474 -36.07372 -34.94266 -34.47355 -33.11175 -32.85101 -31.84243 -28.98221 -28.12369 -27.02235 -25.78889 -25.04354 -24.47394 -23.45797 -22.07174 -21.40287 -21.14750 -18.88207 -18.65435 -18.46403 -17.62195 -16.94418 -16.81449 -16.70798 -16.36732 -15.98116 -15.92769 -15.41385 -15.16545 -14.92213 -14.91024 -14.72014 -14.36644 -14.22365 -14.02540 -13.83351 -13.59040 -13.36574 -13.31112 -13.14171 -12.73247 -12.69773 -12.41612 -12.21273 -12.13148 -12.04649 -11.83765 -11.78503 -11.56628 -11.48206 -11.40041 -11.38626 -11.24896 -10.62693 -10.58922 -10.53185 -10.09926 -8.70599 -8.18394 -5.57314 -0.81524 -0.28169 1.30200 1.39667 1.51593 1.60965 1.88386 2.41998 2.42705 2.79751 3.04445 3.10569 3.25169 3.35655 3.50685 3.64780 3.85919 3.96442 3.99010 4.10223 4.16854 4.36302 4.39168 4.39834 4.42486 4.53577 4.55045 4.59826 4.64942 4.68959 4.81713 4.88131 4.89515 4.95837 5.04318 5.07948 5.09763 5.14507 5.19224 5.21161 5.28642 5.38622 5.39242 5.44287 5.55090 5.62801 5.96170 6.17671 6.41068 7.02881 7.09364 7.52662 7.66740 8.08654 9.01865 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003005 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.252739 B = 9315.944404 C =10092.719430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C 0.060 3.940 4 C -0.057 4.057 5 C -0.139 4.139 6 C 0.553 3.447 7 O -0.554 6.554 8 N -0.697 5.697 9 C 0.166 3.834 10 H 0.051 0.949 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.133 3.867 14 N -0.614 5.614 15 C -0.250 4.250 16 H 0.031 0.969 17 C -0.029 4.029 18 N -0.955 5.955 19 Si 0.954 3.046 20 H -0.281 1.281 21 H -0.313 1.313 22 H -0.248 1.248 23 C 0.144 3.856 24 C -0.144 4.144 25 C 0.103 3.897 26 C -0.102 4.102 27 N -0.268 5.268 28 N -0.247 5.247 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.201 0.799 35 H 0.417 0.583 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.260 0.740 43 H 0.013 0.987 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.015 0.985 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.110 -23.131 -4.278 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.086 4.086 4 C -0.087 4.087 5 C -0.153 4.153 6 C 0.338 3.662 7 O -0.433 6.433 8 N -0.350 5.350 9 C 0.063 3.937 10 H 0.069 0.931 11 C -0.146 4.146 12 C -0.168 4.168 13 C 0.011 3.989 14 N -0.338 5.338 15 C -0.380 4.380 16 H 0.049 0.951 17 C -0.224 4.224 18 N -0.599 5.599 19 Si 0.783 3.217 20 H -0.209 1.209 21 H -0.242 1.242 22 H -0.172 1.172 23 C 0.017 3.983 24 C -0.185 4.185 25 C -0.042 4.042 26 C -0.160 4.160 27 N -0.110 5.110 28 N -0.088 5.088 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.218 0.782 35 H 0.256 0.744 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.731 -21.916 -5.625 28.140 hybrid contribution 1.726 0.510 0.652 1.914 sum -15.004 -21.407 -4.974 26.611 Atomic orbital electron populations 1.21715 0.93865 1.03211 1.01715 1.20669 0.97078 0.86549 1.06098 1.23498 0.94037 0.99907 0.91120 1.23021 0.93072 0.93828 0.98755 1.21076 1.00264 0.96286 0.97650 1.18223 0.80440 0.86052 0.81441 1.90837 1.62481 1.17635 1.72309 1.46061 1.45455 1.12310 1.31178 1.20963 0.87233 0.97933 0.87616 0.93100 1.21320 1.04474 0.97198 0.91588 1.20763 0.98112 0.98766 0.99112 1.20665 0.92254 0.97159 0.88819 1.44372 1.69538 1.06624 1.13289 1.18582 0.99733 0.83633 1.36095 0.95118 1.26176 1.00136 0.97087 0.99030 1.70032 1.26316 1.19498 1.44099 0.85676 0.78142 0.79625 0.78216 1.20894 1.24209 1.17178 1.20755 0.94524 0.94822 0.88197 1.23130 0.96221 1.00181 0.99000 1.23189 0.91730 0.99000 0.90266 1.20868 1.03256 0.88289 1.03566 1.73054 1.09730 1.06380 1.21804 1.72671 1.18025 0.97518 1.20633 0.93450 0.89695 0.93169 0.88375 0.86101 0.78185 0.74414 0.87587 0.88998 0.94875 0.89333 0.92781 0.91739 0.93076 0.96931 0.90903 0.89711 0.96610 0.89716 0.89596 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.77 71.98 0.70 -0.65 16 2 C -0.07 -0.51 6.35 29.84 0.19 -0.32 16 3 C 0.06 0.97 6.25 42.62 0.27 1.23 16 4 C -0.06 -0.82 9.29 22.79 0.21 -0.61 16 5 C -0.14 -3.23 5.92 -19.83 -0.12 -3.35 16 6 C 0.55 15.60 7.68 86.87 0.67 16.27 16 7 O -0.55 -21.57 13.19 -3.77 -0.05 -21.62 16 8 N -0.70 -15.15 4.93 -446.54 -2.20 -17.36 16 9 C 0.17 4.87 2.22 44.69 0.10 4.97 16 10 H 0.05 2.04 6.27 -2.38 -0.01 2.02 16 11 C -0.11 -2.24 5.34 29.51 0.16 -2.09 16 12 C -0.13 -3.42 5.20 28.36 0.15 -3.27 16 13 C 0.13 4.47 6.11 83.58 0.51 4.98 16 14 N -0.61 -27.34 2.19 -707.83 -1.55 -28.89 16 15 C -0.25 -14.31 9.97 84.03 0.84 -13.47 16 16 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 17 C -0.03 -1.71 5.33 84.86 0.45 -1.26 16 18 N -0.95 -62.02 13.97 21.65 0.30 -61.72 16 19 Si 0.95 46.89 25.02 68.60 1.72 48.60 16 20 H -0.28 -13.38 6.74 99.48 0.67 -12.71 16 21 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 22 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 23 C 0.14 5.70 4.20 87.60 0.37 6.06 16 24 C -0.14 -5.09 5.98 31.87 0.19 -4.90 16 25 C 0.10 2.83 6.91 42.92 0.30 3.13 16 26 C -0.10 -2.86 8.99 71.24 0.64 -2.22 16 27 N -0.27 -7.56 11.42 -46.94 -0.54 -8.09 16 28 N -0.25 -5.96 11.04 -47.69 -0.53 -6.49 16 29 H 0.05 0.64 7.96 -2.38 -0.02 0.62 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.10 7.92 -2.39 -0.02 0.08 16 34 H 0.20 0.75 6.60 -2.91 -0.02 0.73 16 35 H 0.42 4.70 6.70 -92.72 -0.62 4.08 16 36 H 0.11 1.36 7.85 -2.39 -0.02 1.34 16 37 H 0.09 1.70 6.28 -2.39 -0.02 1.68 16 38 H 0.03 1.11 6.93 -2.39 -0.02 1.09 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 41 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 42 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 43 H 0.01 0.59 2.93 -2.39 -0.01 0.58 16 44 H 0.07 2.28 6.88 -2.39 -0.02 2.27 16 45 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16 46 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.09 2.80 5.92 -2.39 -0.01 2.79 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -83.31 378.06 3.09 -80.22 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.32 Total: 10.83 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.62 Total: 4.51 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -4.51 Total: -122.54 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.72 Total: 48.60 kcal Total: -83.31 3.09 -80.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052588731.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.351 kcal (2) G-P(sol) polarization free energy of solvation -83.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.85 seconds