Wall clock time and date at job start Tue Mar 31 2020 16:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30786 * 125.72408 * 2 1 4 4 C 1.34424 * 109.32083 * 180.02562 * 3 2 1 5 5 C 1.33859 * 107.80116 * 359.97438 * 4 3 2 6 6 N 1.34408 * 125.72256 * 179.97438 * 2 1 3 7 7 C 1.46472 * 128.44729 * 359.88521 * 6 2 1 8 8 C 1.53278 * 108.69327 * 197.30398 * 7 6 2 9 9 C 1.53115 * 109.70861 * 309.23254 * 8 7 6 10 10 H 1.09004 * 109.49508 * 309.93253 * 9 8 7 11 11 C 1.50698 * 109.50079 * 189.86621 * 9 8 7 12 12 O 1.21283 * 120.00140 * 333.95219 * 11 9 8 13 13 N 1.34774 * 119.99949 * 153.95061 * 11 9 8 14 14 C 1.47427 * 125.64937 * 355.30395 * 13 11 9 15 15 C 1.54917 * 104.82939 * 155.91508 * 14 13 11 16 16 C 1.55154 * 101.58366 * 37.01166 * 15 14 13 17 17 H 1.08995 * 110.72445 * 206.13333 * 16 15 14 18 18 N 1.46500 * 110.72028 * 82.85722 * 16 15 14 19 19 C 1.36936 * 119.99854 * 91.48207 * 18 16 15 20 20 H 1.07998 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00096 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99928 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00195 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47178 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47536 * 119.99631 * 23 21 19 26 26 H 1.48503 * 109.47249 * 239.99492 * 23 21 19 27 27 C 1.47029 * 125.64938 * 175.35551 * 13 11 9 28 28 H 1.09003 * 109.88017 * 300.43771 * 27 13 11 29 29 C 1.52995 * 109.87974 * 61.59724 * 27 13 11 30 30 C 1.50706 * 128.68196 * 179.84939 * 5 4 3 31 31 H 1.08999 * 109.47713 * 270.02576 * 1 2 3 32 32 H 1.09000 * 109.46939 * 30.03153 * 1 2 3 33 33 H 1.09003 * 109.46793 * 150.02511 * 1 2 3 34 34 H 1.08002 * 126.10193 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.59745 * 77.53639 * 7 6 2 36 36 H 1.09003 * 109.60185 * 317.06736 * 7 6 2 37 37 H 1.09010 * 109.43225 * 189.16279 * 8 7 6 38 38 H 1.08993 * 109.39602 * 69.28487 * 8 7 6 39 39 H 1.09003 * 110.36686 * 37.08194 * 14 13 11 40 40 H 1.09000 * 110.36886 * 274.75380 * 14 13 11 41 41 H 1.08996 * 111.00478 * 278.93633 * 15 14 13 42 42 H 1.09010 * 111.03113 * 155.09802 * 15 14 13 43 43 H 0.97000 * 120.00205 * 271.47858 * 18 16 15 44 44 H 0.96998 * 120.00222 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.47281 * 177.81290 * 29 27 13 46 46 H 1.09008 * 109.47370 * 297.80840 * 29 27 13 47 47 H 1.09000 * 109.47167 * 57.80989 * 29 27 13 48 48 H 1.08998 * 109.74689 * 76.18045 * 30 5 4 49 49 H 1.09006 * 109.74718 * 315.45492 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0004 6 7 2.2917 -1.0912 0.0005 7 6 1.8922 -2.5004 0.0034 8 6 3.0925 -3.3504 0.4347 9 6 4.3187 -2.9743 -0.4015 10 1 4.0550 -2.9848 -1.4591 11 6 5.4239 -3.9671 -0.1487 12 8 5.4678 -4.5711 0.9021 13 7 6.3634 -4.1839 -1.0904 14 6 6.3766 -3.5960 -2.4423 15 6 7.8647 -3.6236 -2.8721 16 6 8.3412 -4.9669 -2.2591 17 1 9.4128 -4.9421 -2.0613 18 7 8.0009 -6.0878 -3.1390 19 6 8.8968 -6.5136 -4.0829 20 1 9.8541 -6.0230 -4.1791 21 6 8.5742 -7.5753 -4.9170 22 7 7.4073 -8.1730 -4.8002 23 14 9.7961 -8.1558 -6.2051 24 1 11.0241 -7.3240 -6.1330 25 1 10.1448 -9.5770 -5.9519 26 1 9.1905 -8.0278 -7.5551 27 6 7.5443 -5.0469 -0.9400 28 1 8.1595 -4.6923 -0.1130 29 6 7.1050 -6.4899 -0.6841 30 6 4.7919 -1.5690 -0.0039 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5135 34 1 4.4170 1.3396 -0.0003 35 1 1.5776 -2.7933 -0.9983 36 1 1.0703 -2.6460 0.7044 37 1 2.8619 -4.4054 0.2859 38 1 3.3034 -3.1706 1.4888 39 1 6.0091 -2.5702 -2.4135 40 1 5.7739 -4.1969 -3.1233 41 1 8.4108 -2.7832 -2.4436 42 1 7.9581 -3.6347 -3.9581 43 1 7.1410 -6.5283 -3.0528 44 1 7.1817 -8.9146 -5.3832 45 1 7.9842 -7.1301 -0.6123 46 1 6.5430 -6.5386 0.2487 47 1 6.4747 -6.8290 -1.5061 48 1 5.2364 -1.5968 0.9909 49 1 5.5256 -1.2105 -0.7259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074880708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:19 Heat of formation + Delta-G solvation = 37.772840 kcal Electronic energy + Delta-G solvation = -29370.602259 eV Core-core repulsion = 25526.649714 eV Total energy + Delta-G solvation = -3843.952546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.59130 -40.21875 -37.93528 -36.26663 -34.10801 -33.60895 -31.84049 -31.23792 -30.80118 -30.00797 -28.91724 -26.83848 -25.28529 -24.57255 -23.75010 -23.28715 -21.86719 -20.87452 -19.87488 -19.03278 -18.53048 -17.60211 -16.98451 -16.85245 -16.30881 -15.92875 -15.14109 -14.78544 -14.42111 -14.39082 -14.23541 -13.97137 -13.80286 -13.58628 -13.28564 -13.24384 -13.17256 -12.94762 -12.69307 -12.61504 -12.32428 -12.12446 -12.02322 -11.78707 -11.42043 -11.38558 -11.23206 -11.03997 -10.98264 -10.81008 -10.68122 -10.28554 -10.13702 -10.07083 -9.70043 -9.68778 -9.49213 -9.02123 -8.39400 -8.36373 -7.08862 -5.87641 -3.17238 1.83656 2.52739 2.68248 2.95316 3.09994 3.36540 3.42899 3.44843 4.09845 4.24648 4.27208 4.32314 4.49742 4.56498 4.65965 4.81862 4.91803 4.98798 5.01874 5.07825 5.18710 5.23481 5.27888 5.33509 5.42002 5.45604 5.49907 5.51281 5.58113 5.60763 5.70810 5.73140 5.78671 5.81972 5.94407 6.06292 6.20251 6.28940 6.36731 6.46246 6.56855 6.58772 6.67378 6.81000 6.97011 7.02003 7.61728 7.75518 7.92264 8.28906 8.31033 9.42515 9.97226 10.32108 11.34595 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.002580 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.388261 B =10852.175526 C =11014.444182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.204 3.796 3 N -0.494 5.494 4 C -0.021 4.021 5 C -0.020 4.020 6 N -0.451 5.451 7 C 0.103 3.897 8 C -0.113 4.113 9 C -0.107 4.107 10 H 0.095 0.905 11 C 0.533 3.467 12 O -0.543 6.543 13 N -0.604 5.604 14 C 0.103 3.897 15 C -0.159 4.159 16 C 0.172 3.828 17 H 0.070 0.930 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.126 3.874 28 H 0.070 0.930 29 C -0.148 4.148 30 C -0.030 4.030 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.170 0.830 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 14.026 9.553 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 N -0.214 5.214 4 C -0.168 4.168 5 C -0.134 4.134 6 N -0.136 5.136 7 C -0.019 4.019 8 C -0.152 4.152 9 C -0.129 4.129 10 H 0.113 0.887 11 C 0.321 3.679 12 O -0.421 6.421 13 N -0.337 5.337 14 C -0.020 4.020 15 C -0.201 4.201 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.355 5.355 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.022 3.978 28 H 0.088 0.912 29 C -0.207 4.207 30 C -0.069 4.069 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.187 0.813 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.106 0.894 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.386 14.302 10.038 20.856 hybrid contribution 0.647 -1.342 -0.944 1.764 sum -10.739 12.961 9.093 19.131 Atomic orbital electron populations 1.20154 0.85026 1.03937 1.03368 1.23102 0.95580 0.81288 1.05833 1.70445 1.01964 1.28087 1.20865 1.21805 0.94833 0.91835 1.08349 1.20985 0.85331 0.95272 1.11783 1.45294 1.06291 1.07263 1.54713 1.22046 0.98841 0.77627 1.03377 1.21692 0.91841 1.00419 1.01202 1.21374 0.94681 0.94704 1.02153 0.88657 1.19876 0.81975 0.82889 0.83153 1.90680 1.75305 1.50085 1.26026 1.48674 1.24342 1.46613 1.14103 1.22350 0.99376 0.97278 0.82963 1.23523 0.93824 1.00035 1.02693 1.21198 0.96744 0.88064 0.88055 0.91166 1.42555 1.19486 1.34905 1.38583 1.19284 0.97099 1.11705 1.09358 0.90954 1.24749 0.97118 0.98740 1.00037 1.69667 1.21258 1.25469 1.41418 0.86125 0.80282 0.78383 0.81393 1.20502 1.21854 1.21889 1.22040 0.85817 0.90928 0.99015 0.91192 1.21918 1.02258 0.94943 1.01541 1.20100 0.93307 0.89985 1.03516 0.90301 0.89217 0.90943 0.81320 0.89450 0.88715 0.88762 0.89709 0.91693 0.91030 0.91953 0.89390 0.77565 0.93462 0.91536 0.92651 0.91677 0.89361 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.24 36.00 0.37 -0.08 16 2 C 0.20 2.21 7.94 -155.75 -1.24 0.98 16 3 N -0.49 -6.50 11.27 -11.02 -0.12 -6.62 16 4 C -0.02 -0.25 11.84 -17.95 -0.21 -0.46 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.75 16 6 N -0.45 -4.63 3.13 -109.43 -0.34 -4.97 16 7 C 0.10 0.80 6.60 -3.91 -0.03 0.77 16 8 C -0.11 -1.08 4.62 -26.53 -0.12 -1.21 16 9 C -0.11 -1.16 1.85 -91.44 -0.17 -1.33 16 10 H 0.10 0.99 7.19 -51.93 -0.37 0.62 16 11 C 0.53 7.69 6.73 -10.99 -0.07 7.61 16 12 O -0.54 -9.48 15.18 5.56 0.08 -9.40 16 13 N -0.60 -8.97 3.07 -163.01 -0.50 -9.47 16 14 C 0.10 1.42 6.34 -2.52 -0.02 1.40 16 15 C -0.16 -2.40 6.77 -24.58 -0.17 -2.57 16 16 C 0.17 3.08 3.48 -66.10 -0.23 2.85 16 17 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 18 N -0.71 -16.24 4.55 -51.66 -0.23 -16.48 16 19 C -0.24 -6.26 9.96 -15.06 -0.15 -6.41 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 23 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.13 2.09 3.46 -66.95 -0.23 1.86 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 C -0.15 -2.72 8.47 37.16 0.31 -2.41 16 30 C -0.03 -0.31 5.59 -27.61 -0.15 -0.46 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.36 7.95 -51.93 -0.41 -0.06 16 34 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.90 8.11 -51.92 -0.42 0.48 16 38 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 39 H 0.06 0.72 6.75 -51.93 -0.35 0.37 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 43 H 0.39 9.54 5.69 -40.82 -0.23 9.31 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 1.01 6.76 -51.92 -0.35 0.66 16 47 H 0.06 1.33 6.24 -51.93 -0.32 1.00 16 48 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 49 H 0.09 0.85 7.47 -51.93 -0.39 0.46 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -32.06 385.04 -10.24 -42.30 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.89 Total: 9.03 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.74 Total: -0.58 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.48 Total: -63.57 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.06 -10.24 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074880708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.073 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds