Wall clock time and date at job start Tue Mar 31 2020 16:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30784 * 125.72384 * 2 1 4 4 C 1.34428 * 109.31864 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79975 * 359.97438 * 4 3 2 6 6 N 1.34407 * 125.72350 * 179.97438 * 2 1 3 7 7 C 1.46475 * 128.44194 * 0.16245 * 6 2 1 8 8 C 1.53283 * 108.82463 * 162.60006 * 7 6 2 9 9 H 1.09008 * 109.43207 * 290.76818 * 8 7 6 10 10 C 1.50705 * 109.43191 * 170.91742 * 8 7 6 11 11 O 1.21283 * 119.99775 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99817 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99653 * 179.97438 * 12 10 8 14 14 H 1.09002 * 110.63857 * 36.68879 * 13 12 10 15 15 C 1.54322 * 110.71648 * 273.54466 * 13 12 10 16 16 N 1.47029 * 107.26733 * 219.44530 * 15 13 12 17 17 C 1.36936 * 125.64524 * 178.90794 * 16 15 13 18 18 H 1.08004 * 119.99985 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00387 * 0.02562 * 17 16 15 20 20 N 1.31619 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47023 * 60.00015 * 21 19 17 23 23 H 1.48502 * 109.47117 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46868 * 300.00106 * 21 19 17 25 25 C 1.47419 * 108.70370 * 358.94171 * 16 15 13 26 26 C 1.54912 * 104.83580 * 24.12893 * 25 16 15 27 27 H 1.08994 * 111.00189 * 81.06215 * 26 25 16 28 28 C 1.53001 * 111.00720 * 204.91693 * 26 25 16 29 29 C 1.53489 * 109.50910 * 50.72174 * 8 7 6 30 30 C 1.50711 * 128.67808 * 180.14571 * 5 4 3 31 31 H 1.08999 * 109.46970 * 270.00478 * 1 2 3 32 32 H 1.08999 * 109.46736 * 29.99967 * 1 2 3 33 33 H 1.08991 * 109.47367 * 150.00272 * 1 2 3 34 34 H 1.08004 * 126.10137 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.59959 * 282.44103 * 7 6 2 36 36 H 1.08997 * 109.60096 * 42.75914 * 7 6 2 37 37 H 0.96998 * 119.99932 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.88769 * 338.85989 * 15 13 12 39 39 H 1.08996 * 109.88207 * 100.03001 * 15 13 12 40 40 H 0.96996 * 120.00594 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36897 * 142.96558 * 25 16 15 42 42 H 1.09000 * 110.37002 * 265.29201 * 25 16 15 43 43 H 1.08992 * 109.46856 * 172.19451 * 28 26 25 44 44 H 1.08995 * 109.47056 * 292.19473 * 28 26 25 45 45 H 1.08996 * 109.46756 * 52.19621 * 28 26 25 46 46 H 1.09001 * 109.44063 * 170.19609 * 29 8 7 47 47 H 1.08997 * 109.52885 * 50.14272 * 29 8 7 48 48 H 1.08999 * 109.74552 * 283.83100 * 30 5 4 49 49 H 1.09000 * 109.74900 * 44.55082 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5927 -0.6561 0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8921 -2.5003 -0.0021 8 6 3.0900 -3.3534 -0.4343 9 1 3.3013 -3.1744 -1.4886 10 6 2.7675 -4.8112 -0.2292 11 8 1.6881 -5.1363 0.2182 12 7 3.6785 -5.7536 -0.5429 13 6 3.3651 -7.1707 -0.3430 14 1 2.3179 -7.3685 -0.5717 15 6 3.7009 -7.6059 1.0989 16 7 4.2840 -8.9535 1.0235 17 6 4.7362 -9.6881 2.0870 18 1 5.1498 -10.6728 1.9263 19 6 4.6630 -9.1672 3.3716 20 7 4.1585 -7.9675 3.5675 21 14 5.2805 -10.1690 4.8223 22 1 6.7232 -10.4689 4.6384 23 1 5.0911 -9.3946 6.0751 24 1 4.5175 -11.4402 4.9066 25 6 4.3018 -9.3826 -0.3868 26 6 4.2971 -8.0654 -1.2022 27 1 5.2989 -7.6404 -1.2636 28 6 3.7110 -8.2866 -2.5981 29 6 4.3185 -2.9742 0.4042 30 6 4.7919 -1.5691 0.0054 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5137 34 1 4.4171 1.3395 0.0003 35 1 1.5772 -2.7930 0.9995 36 1 1.0686 -2.6456 -0.7013 37 1 4.5416 -5.4935 -0.9011 38 1 4.4209 -6.9145 1.5367 39 1 2.7923 -7.6282 1.7005 40 1 4.1069 -7.6036 4.4652 41 1 5.2046 -9.9559 -0.5975 42 1 3.4145 -9.9731 -0.6150 43 1 3.5910 -7.3256 -3.0981 44 1 4.3842 -8.9169 -3.1791 45 1 2.7404 -8.7748 -2.5114 46 1 5.1179 -3.6924 0.2220 47 1 4.0548 -2.9837 1.4618 48 1 5.2362 -1.5976 -0.9895 49 1 5.5258 -1.2100 0.7269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080342145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:51 Heat of formation + Delta-G solvation = 39.316510 kcal Electronic energy + Delta-G solvation = -29250.139783 eV Core-core repulsion = 25406.254176 eV Total energy + Delta-G solvation = -3843.885607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.49903 -39.94923 -37.84366 -36.23896 -34.10859 -33.45600 -32.71485 -31.32273 -30.43618 -30.08904 -27.85765 -26.53581 -25.72545 -24.83166 -23.50409 -22.56705 -21.19644 -20.55609 -20.07730 -19.54177 -19.02485 -17.28908 -16.96185 -16.54957 -16.03070 -15.81731 -15.14779 -14.91350 -14.61421 -14.25510 -14.13341 -13.86819 -13.79660 -13.48692 -13.23161 -13.13077 -13.05524 -12.87802 -12.75601 -12.52953 -12.10915 -12.00107 -11.95407 -11.76832 -11.41664 -11.33354 -11.18622 -11.07425 -10.80596 -10.68250 -10.47989 -10.05440 -10.01761 -9.99876 -9.77771 -9.65659 -9.53413 -8.68357 -8.59563 -8.27583 -6.88811 -5.73824 -3.09110 1.94404 2.56206 2.71648 3.03715 3.35021 3.38356 3.42601 3.44048 4.11330 4.34905 4.40629 4.43125 4.48486 4.60203 4.87110 4.95931 4.98377 5.06542 5.12498 5.22458 5.24323 5.29432 5.35664 5.36454 5.47841 5.50056 5.57551 5.62219 5.67266 5.68010 5.83084 5.89420 5.90592 5.92144 6.06553 6.10618 6.26709 6.31205 6.40952 6.55891 6.65187 6.67635 6.84761 7.11105 7.46388 7.51992 7.74437 7.79760 8.01277 8.20501 8.37962 9.17069 9.77779 10.42169 11.36750 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002960 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.183723 B = 9458.195347 C =10397.305642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.207 3.793 3 N -0.496 5.496 4 C -0.025 4.025 5 C -0.028 4.028 6 N -0.449 5.449 7 C 0.123 3.877 8 C -0.118 4.118 9 H 0.104 0.896 10 C 0.522 3.478 11 O -0.535 6.535 12 N -0.707 5.707 13 C 0.120 3.880 14 H 0.087 0.913 15 C 0.175 3.825 16 N -0.606 5.606 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.141 3.859 26 C -0.113 4.113 27 H 0.077 0.923 28 C -0.138 4.138 29 C -0.117 4.117 30 C -0.042 4.042 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 12.501 -12.639 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 N -0.216 5.216 4 C -0.172 4.172 5 C -0.142 4.142 6 N -0.132 5.132 7 C 0.000 4.000 8 C -0.140 4.140 9 H 0.122 0.878 10 C 0.307 3.693 11 O -0.412 6.412 12 N -0.357 5.357 13 C 0.015 3.985 14 H 0.105 0.895 15 C 0.049 3.951 16 N -0.333 5.333 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.014 3.986 26 C -0.133 4.133 27 H 0.096 0.904 28 C -0.195 4.195 29 C -0.156 4.156 30 C -0.081 4.081 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.020 12.938 -12.060 17.802 hybrid contribution 1.104 -1.218 0.704 1.788 sum -0.917 11.720 -11.356 16.345 Atomic orbital electron populations 1.20177 0.85017 1.03854 1.03616 1.23094 0.95616 0.81139 1.05631 1.70438 1.01995 1.28044 1.21127 1.21789 0.94802 0.91925 1.08699 1.21155 0.85702 0.95444 1.11904 1.45284 1.06386 1.07245 1.54321 1.21718 0.97064 0.76392 1.04801 1.21611 0.96619 0.93006 1.02744 0.87785 1.19984 0.84692 0.86720 0.77942 1.90742 1.23622 1.82597 1.44189 1.45886 1.17796 1.06778 1.65215 1.22541 0.99086 0.77849 0.98995 0.89500 1.21461 0.98290 0.86558 0.88794 1.44401 1.72656 1.15508 1.00702 1.19000 1.34151 0.98095 0.84762 0.90376 1.24820 1.01140 0.96954 0.97409 1.69950 1.50092 1.15989 1.20588 0.86202 0.78487 0.79058 0.82010 1.21168 1.21590 1.21129 1.21592 0.98506 0.93132 0.85375 1.22613 0.98637 0.97943 0.94132 0.90428 1.21701 1.00923 1.00985 0.95928 1.21763 0.96187 0.96951 1.00650 1.20231 0.93019 0.91887 1.02919 0.90124 0.89304 0.90825 0.81472 0.88279 0.88555 0.76982 0.93171 0.93435 0.93686 0.93932 0.96022 0.93166 0.92711 0.92562 0.89615 0.90221 0.89828 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.24 36.01 0.37 -0.23 16 2 C 0.21 2.58 7.94 -155.75 -1.24 1.34 16 3 N -0.50 -6.99 11.27 -11.02 -0.12 -7.11 16 4 C -0.02 -0.30 11.84 -17.95 -0.21 -0.52 16 5 C -0.03 -0.32 6.57 -81.73 -0.54 -0.86 16 6 N -0.45 -5.35 3.13 -109.43 -0.34 -5.69 16 7 C 0.12 1.39 5.37 -3.91 -0.02 1.37 16 8 C -0.12 -1.26 2.53 -91.37 -0.23 -1.49 16 9 H 0.10 0.92 8.12 -51.92 -0.42 0.50 16 10 C 0.52 7.60 7.16 -10.98 -0.08 7.52 16 11 O -0.53 -10.02 15.56 5.56 0.09 -9.93 16 12 N -0.71 -9.99 4.96 -52.02 -0.26 -10.25 16 13 C 0.12 2.12 2.70 -66.09 -0.18 1.94 16 14 H 0.09 1.65 7.60 -51.93 -0.39 1.26 16 15 C 0.17 4.15 5.12 -3.06 -0.02 4.13 16 16 N -0.61 -15.05 3.39 -170.07 -0.58 -15.63 16 17 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 21 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.14 2.74 6.70 -2.53 -0.02 2.72 16 26 C -0.11 -1.75 3.25 -88.47 -0.29 -2.04 16 27 H 0.08 1.14 8.00 -51.93 -0.42 0.73 16 28 C -0.14 -1.68 9.31 37.16 0.35 -1.33 16 29 C -0.12 -1.18 5.25 -26.20 -0.14 -1.32 16 30 C -0.04 -0.37 6.32 -27.60 -0.17 -0.54 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 7.59 -51.93 -0.39 0.15 16 34 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.10 1.27 7.81 -51.93 -0.41 0.87 16 36 H 0.10 0.99 7.71 -51.93 -0.40 0.59 16 37 H 0.40 4.41 7.86 -40.82 -0.32 4.09 16 38 H 0.05 1.31 7.27 -51.93 -0.38 0.93 16 39 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 46 H 0.09 0.79 7.33 -51.93 -0.38 0.41 16 47 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -34.34 387.74 -10.57 -44.91 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.08 Total: 3.36 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.66 Total: 3.90 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -0.73 Total: -65.01 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.34 -10.57 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080342145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.228 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds