Wall clock time and date at job start Tue Mar 31 2020 16:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30784 * 125.72384 * 2 1 4 4 C 1.34428 * 109.31864 * 179.97438 * 3 2 1 5 5 C 1.33861 * 107.79975 * 359.97438 * 4 3 2 6 6 N 1.34407 * 125.72350 * 179.97438 * 2 1 3 7 7 C 1.46475 * 128.44194 * 0.16245 * 6 2 1 8 8 C 1.53283 * 108.82463 * 162.60006 * 7 6 2 9 9 H 1.09008 * 109.43207 * 290.76818 * 8 7 6 10 10 C 1.50705 * 109.43191 * 170.91742 * 8 7 6 11 11 O 1.21283 * 119.99775 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99817 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99653 * 179.97438 * 12 10 8 14 14 H 1.09002 * 110.63857 * 36.68879 * 13 12 10 15 15 C 1.54322 * 110.71648 * 273.54466 * 13 12 10 16 16 N 1.47029 * 107.26733 * 219.44530 * 15 13 12 17 17 C 1.36936 * 125.64524 * 178.90794 * 16 15 13 18 18 H 1.08004 * 119.99985 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00387 * 0.02562 * 17 16 15 20 20 N 1.31619 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47023 * 60.00015 * 21 19 17 23 23 H 1.48502 * 109.47117 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46868 * 300.00106 * 21 19 17 25 25 C 1.47419 * 108.70370 * 358.94171 * 16 15 13 26 26 C 1.54912 * 104.83580 * 24.12893 * 25 16 15 27 27 H 1.08994 * 111.00189 * 81.06215 * 26 25 16 28 28 C 1.53001 * 111.00720 * 204.91693 * 26 25 16 29 29 C 1.53489 * 109.50910 * 50.72174 * 8 7 6 30 30 C 1.50711 * 128.67808 * 180.14571 * 5 4 3 31 31 H 1.08999 * 109.46970 * 270.00478 * 1 2 3 32 32 H 1.08999 * 109.46736 * 29.99967 * 1 2 3 33 33 H 1.08991 * 109.47367 * 150.00272 * 1 2 3 34 34 H 1.08004 * 126.10137 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.59959 * 282.44103 * 7 6 2 36 36 H 1.08997 * 109.60096 * 42.75914 * 7 6 2 37 37 H 0.96998 * 119.99932 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.88769 * 338.85989 * 15 13 12 39 39 H 1.08996 * 109.88207 * 100.03001 * 15 13 12 40 40 H 0.96996 * 120.00594 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36897 * 142.96558 * 25 16 15 42 42 H 1.09000 * 110.37002 * 265.29201 * 25 16 15 43 43 H 1.08992 * 109.46856 * 172.19451 * 28 26 25 44 44 H 1.08995 * 109.47056 * 292.19473 * 28 26 25 45 45 H 1.08996 * 109.46756 * 52.19621 * 28 26 25 46 46 H 1.09001 * 109.44063 * 170.19609 * 29 8 7 47 47 H 1.08997 * 109.52885 * 50.14272 * 29 8 7 48 48 H 1.08999 * 109.74552 * 283.83100 * 30 5 4 49 49 H 1.09000 * 109.74900 * 44.55082 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 0.0006 5 6 3.5927 -0.6561 0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8921 -2.5003 -0.0021 8 6 3.0900 -3.3534 -0.4343 9 1 3.3013 -3.1744 -1.4886 10 6 2.7675 -4.8112 -0.2292 11 8 1.6881 -5.1363 0.2182 12 7 3.6785 -5.7536 -0.5429 13 6 3.3651 -7.1707 -0.3430 14 1 2.3179 -7.3685 -0.5717 15 6 3.7009 -7.6059 1.0989 16 7 4.2840 -8.9535 1.0235 17 6 4.7362 -9.6881 2.0870 18 1 5.1498 -10.6728 1.9263 19 6 4.6630 -9.1672 3.3716 20 7 4.1585 -7.9675 3.5675 21 14 5.2805 -10.1690 4.8223 22 1 6.7232 -10.4689 4.6384 23 1 5.0911 -9.3946 6.0751 24 1 4.5175 -11.4402 4.9066 25 6 4.3018 -9.3826 -0.3868 26 6 4.2971 -8.0654 -1.2022 27 1 5.2989 -7.6404 -1.2636 28 6 3.7110 -8.2866 -2.5981 29 6 4.3185 -2.9742 0.4042 30 6 4.7919 -1.5691 0.0054 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5137 34 1 4.4171 1.3395 0.0003 35 1 1.5772 -2.7930 0.9995 36 1 1.0686 -2.6456 -0.7013 37 1 4.5416 -5.4935 -0.9011 38 1 4.4209 -6.9145 1.5367 39 1 2.7923 -7.6282 1.7005 40 1 4.1069 -7.6036 4.4652 41 1 5.2046 -9.9559 -0.5975 42 1 3.4145 -9.9731 -0.6150 43 1 3.5910 -7.3256 -3.0981 44 1 4.3842 -8.9169 -3.1791 45 1 2.7404 -8.7748 -2.5114 46 1 5.1179 -3.6924 0.2220 47 1 4.0548 -2.9837 1.4618 48 1 5.2362 -1.5976 -0.9895 49 1 5.5258 -1.2100 0.7269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080342145.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:49 Heat of formation + Delta-G solvation = 17.217584 kcal Electronic energy + Delta-G solvation = -29251.098065 eV Core-core repulsion = 25406.254176 eV Total energy + Delta-G solvation = -3844.843888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -43.39167 -41.20793 -39.32962 -37.25486 -35.69171 -34.47868 -34.14342 -32.30880 -32.10347 -30.93222 -29.46556 -27.39640 -27.37283 -26.01569 -24.91647 -23.50932 -22.42571 -21.79880 -21.55415 -20.78837 -19.93923 -18.89126 -18.33302 -17.51749 -17.41534 -16.93841 -16.74210 -16.10439 -15.71611 -15.55999 -15.39249 -14.97439 -14.79648 -14.71168 -14.54991 -14.29310 -14.07924 -13.93846 -13.82778 -13.68370 -13.33861 -13.22575 -13.03771 -12.91975 -12.86275 -12.81172 -12.58050 -12.26424 -12.18960 -12.05652 -11.96529 -11.85163 -11.65522 -11.45264 -10.95445 -10.89386 -10.74327 -10.52306 -10.03277 -9.13895 -8.92910 -7.85747 -5.23025 1.06386 1.43680 1.47106 1.52834 1.53451 1.62572 2.12090 2.22459 2.48622 3.20887 3.32498 3.44040 3.53071 3.59359 3.65306 3.76497 3.78282 4.01488 4.05548 4.11352 4.15123 4.22302 4.27966 4.40099 4.50690 4.55542 4.62303 4.64346 4.68870 4.73347 4.84033 4.88833 4.90985 4.98820 5.02445 5.07119 5.08580 5.11585 5.22045 5.29937 5.43978 5.45155 5.50602 5.62062 5.78457 5.82770 6.16155 6.22698 6.53430 7.06047 7.10864 7.22875 7.75560 8.38605 9.22776 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002960 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.183723 B = 9458.195347 C =10397.305642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.193 3.807 3 N -0.529 5.529 4 C -0.044 4.044 5 C -0.032 4.032 6 N -0.452 5.452 7 C 0.125 3.875 8 C -0.102 4.102 9 H 0.138 0.862 10 C 0.521 3.479 11 O -0.581 6.581 12 N -0.695 5.695 13 C 0.137 3.863 14 H 0.073 0.927 15 C 0.189 3.811 16 N -0.628 5.628 17 C -0.242 4.242 18 H 0.087 0.913 19 C -0.068 4.068 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.272 1.272 23 H -0.298 1.298 24 H -0.279 1.279 25 C 0.130 3.870 26 C -0.092 4.092 27 H 0.095 0.905 28 C -0.130 4.130 29 C -0.115 4.115 30 C -0.033 4.033 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.186 0.814 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.415 0.585 38 H 0.019 0.981 39 H -0.013 1.013 40 H 0.243 0.757 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.050 0.950 48 H 0.113 0.887 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 12.423 -15.247 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.249 5.249 4 C -0.191 4.191 5 C -0.146 4.146 6 N -0.136 5.136 7 C 0.003 3.997 8 C -0.124 4.124 9 H 0.156 0.844 10 C 0.307 3.693 11 O -0.461 6.461 12 N -0.346 5.346 13 C 0.031 3.969 14 H 0.091 0.909 15 C 0.063 3.937 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.205 1.205 25 C 0.005 3.995 26 C -0.112 4.112 27 H 0.113 0.887 28 C -0.187 4.187 29 C -0.153 4.153 30 C -0.071 4.071 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.203 0.797 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.253 0.747 38 H 0.038 0.962 39 H 0.006 0.994 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.118 0.882 47 H 0.069 0.931 48 H 0.131 0.869 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.310 12.855 -14.726 19.550 hybrid contribution 0.552 -1.230 1.539 2.046 sum 0.243 11.625 -13.187 17.582 Atomic orbital electron populations 1.20297 0.83134 1.04945 1.04225 1.23694 0.96914 0.81036 1.05257 1.70424 1.03077 1.29098 1.22331 1.22204 0.94911 0.92804 1.09151 1.21632 0.86297 0.95749 1.10925 1.45361 1.06727 1.07147 1.54364 1.21647 0.97817 0.76384 1.03884 1.21537 0.96529 0.89554 1.04756 0.84411 1.20670 0.83835 0.88271 0.76486 1.90732 1.25741 1.83555 1.46054 1.45682 1.18775 1.05243 1.64901 1.22055 0.99058 0.80306 0.95493 0.90856 1.21106 0.94572 0.86134 0.91904 1.44726 1.72323 1.15828 1.02624 1.19453 1.33174 0.98621 0.85859 0.89551 1.25680 1.02076 0.98114 1.00185 1.70213 1.51782 1.17704 1.20226 0.85164 0.78499 0.77494 0.78260 1.19752 1.22449 1.20472 1.21877 0.98945 0.95529 0.83129 1.22529 0.99083 0.94585 0.94992 0.88716 1.21659 1.00810 1.02668 0.93569 1.21755 0.96174 0.98562 0.98831 1.20325 0.92053 0.89804 1.04928 0.89704 0.88460 0.89460 0.79676 0.90624 0.87401 0.74700 0.96236 0.99437 0.94745 0.92733 0.95867 0.91001 0.90485 0.93172 0.88216 0.93082 0.86899 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.24 71.24 0.73 -0.43 16 2 C 0.19 4.71 7.94 138.25 1.10 5.81 16 3 N -0.53 -14.67 11.27 -188.77 -2.13 -16.80 16 4 C -0.04 -1.04 11.84 83.30 0.99 -0.06 16 5 C -0.03 -0.68 6.57 40.73 0.27 -0.41 16 6 N -0.45 -10.39 3.13 -500.13 -1.57 -11.96 16 7 C 0.13 2.77 5.37 86.48 0.46 3.24 16 8 C -0.10 -2.02 2.53 -11.28 -0.03 -2.04 16 9 H 0.14 1.88 8.12 -2.38 -0.02 1.87 16 10 C 0.52 14.90 7.16 87.66 0.63 15.53 16 11 O -0.58 -22.45 15.56 -3.04 -0.05 -22.50 16 12 N -0.70 -18.72 4.96 -436.90 -2.17 -20.88 16 13 C 0.14 4.81 2.70 46.18 0.12 4.94 16 14 H 0.07 2.82 7.60 -2.39 -0.02 2.80 16 15 C 0.19 9.37 5.12 86.73 0.44 9.81 16 16 N -0.63 -31.74 3.39 -691.99 -2.35 -34.09 16 17 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 18 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 19 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 20 N -0.95 -58.27 10.31 21.65 0.22 -58.05 16 21 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 C 0.13 4.92 6.70 86.86 0.58 5.50 16 26 C -0.09 -2.62 3.25 -9.40 -0.03 -2.65 16 27 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 28 C -0.13 -2.64 9.31 71.98 0.67 -1.97 16 29 C -0.12 -2.13 5.25 30.94 0.16 -1.97 16 30 C -0.03 -0.48 6.32 30.03 0.19 -0.29 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.22 7.59 -2.39 -0.02 1.20 16 34 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.08 2.04 7.81 -2.39 -0.02 2.02 16 36 H 0.11 2.11 7.71 -2.39 -0.02 2.10 16 37 H 0.42 8.00 7.86 -92.71 -0.73 7.27 16 38 H 0.02 1.07 7.27 -2.39 -0.02 1.05 16 39 H -0.01 -0.77 7.51 -2.39 -0.02 -0.78 16 40 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.02 0.88 7.98 -2.39 -0.02 0.86 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.11 8.07 -2.39 -0.02 1.09 16 46 H 0.10 1.58 7.33 -2.39 -0.02 1.56 16 47 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 48 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -80.09 387.74 1.83 -78.26 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.22 Total: 19.05 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.62 Total: 18.99 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -7.99 Total: -141.77 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -80.09 1.83 -78.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080342145.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.480 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds