Wall clock time and date at job start Tue Mar 31 2020 19:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30745 * 125.61963 * 2 1 4 4 C 1.33571 * 109.15265 * 180.02562 * 3 2 1 5 5 C 1.35029 * 107.97669 * 359.94220 * 4 3 2 6 6 N 1.35317 * 125.61365 * 180.02562 * 2 1 3 7 7 H 0.96994 * 126.49849 * 0.05470 * 6 2 1 8 8 C 1.50659 * 124.45292 * 180.18191 * 5 4 3 9 9 C 1.53390 * 108.38331 * 16.40498 * 8 5 4 10 10 H 1.09005 * 109.48405 * 70.35228 * 9 8 5 11 11 C 1.50702 * 109.47610 * 190.35993 * 9 8 5 12 12 O 1.21283 * 119.99988 * 119.96785 * 11 9 8 13 13 N 1.34773 * 120.00092 * 299.97766 * 11 9 8 14 14 C 1.46502 * 120.00143 * 354.89953 * 13 11 9 15 15 C 1.46502 * 119.99809 * 175.17556 * 13 11 9 16 16 C 1.52992 * 109.47091 * 274.83662 * 15 13 11 17 17 H 1.09001 * 112.96303 * 66.98068 * 16 15 13 18 18 C 1.53938 * 113.77480 * 295.29731 * 16 15 13 19 19 C 1.53943 * 86.29503 * 222.09173 * 18 16 15 20 20 N 1.47581 * 86.11573 * 23.60757 * 19 18 16 21 21 C 1.36932 * 134.49579 * 155.36096 * 20 19 18 22 22 H 1.07996 * 120.00620 * 175.37260 * 21 20 19 23 23 C 1.38819 * 120.00102 * 355.37099 * 21 20 19 24 24 N 1.31621 * 119.99329 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00417 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46969 * 59.99654 * 25 23 21 27 27 H 1.48496 * 109.47112 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46961 * 300.00076 * 25 23 21 29 29 C 1.53117 * 109.44957 * 310.35416 * 9 8 5 30 30 C 1.50869 * 128.03840 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47322 * 89.97269 * 1 2 3 32 32 H 1.09003 * 109.47389 * 209.97265 * 1 2 3 33 33 H 1.09000 * 109.47406 * 329.97578 * 1 2 3 34 34 H 1.08998 * 109.67661 * 256.67609 * 8 5 4 35 35 H 1.09000 * 109.67839 * 136.12889 * 8 5 4 36 36 H 1.08998 * 109.46914 * 89.99800 * 14 13 11 37 37 H 1.08996 * 109.47528 * 210.00000 * 14 13 11 38 38 H 1.09000 * 109.47181 * 330.00259 * 14 13 11 39 39 H 1.08995 * 109.46957 * 34.84212 * 15 13 11 40 40 H 1.09002 * 109.46761 * 154.84158 * 15 13 11 41 41 H 1.09003 * 113.74199 * 336.43781 * 18 16 15 42 42 H 1.09001 * 113.74222 * 107.74833 * 18 16 15 43 43 H 1.09000 * 113.77087 * 137.90849 * 19 18 16 44 44 H 1.09001 * 113.77401 * 269.19253 * 19 18 16 45 45 H 0.97001 * 119.99296 * 179.97438 * 24 23 21 46 46 H 1.08996 * 109.46928 * 190.03549 * 29 9 8 47 47 H 1.09002 * 109.45877 * 310.01255 * 29 9 8 48 48 H 1.09001 * 109.67621 * 76.91518 * 30 4 3 49 49 H 1.08995 * 109.70296 * 316.39924 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0628 0.0000 4 6 3.5493 0.6842 -0.0006 5 6 3.5849 -0.6656 0.0004 6 7 2.2949 -1.1001 -0.0005 7 1 1.9970 -2.0231 -0.0016 8 6 4.8493 -1.4849 0.0041 9 6 6.0135 -0.5759 0.4175 10 1 5.9201 -0.3232 1.4738 11 6 7.3182 -1.2939 0.1864 12 8 8.1412 -0.8270 -0.5724 13 7 7.5704 -2.4549 0.8226 14 6 6.6272 -2.9623 1.8222 15 6 8.7907 -3.2065 0.5189 16 6 8.5494 -4.1001 -0.6992 17 1 8.3953 -3.5342 -1.6180 18 6 7.4979 -5.1995 -0.4638 19 6 8.4528 -6.1366 -1.2254 20 7 9.5239 -5.2006 -0.8320 21 6 10.8779 -5.3095 -0.6595 22 1 11.4654 -4.4326 -0.4309 23 6 11.4955 -6.5470 -0.7784 24 7 10.7794 -7.6158 -1.0564 25 14 13.3425 -6.6957 -0.5423 26 1 13.7047 -6.2438 0.8251 27 1 13.7520 -8.1119 -0.7210 28 1 14.0393 -5.8494 -1.5440 29 6 5.9813 0.7062 -0.4189 30 6 4.7777 1.5602 -0.0013 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 5.0312 -1.8836 -0.9939 35 1 4.7531 -2.3050 0.7156 36 1 5.8898 -3.6003 1.3351 37 1 7.1681 -3.5394 2.5722 38 1 6.1219 -2.1248 2.3031 39 1 9.6019 -2.5108 0.3043 40 1 9.0593 -3.8247 1.3756 41 1 7.3673 -5.4644 0.5854 42 1 6.5541 -5.0215 -0.9792 43 1 8.5474 -7.1258 -0.7777 44 1 8.2701 -6.1717 -2.2995 45 1 11.2110 -8.4804 -1.1399 46 1 6.9000 1.2695 -0.2559 47 1 5.8954 0.4490 -1.4746 48 1 4.9421 1.9626 0.9983 49 1 4.6451 2.3784 -0.7090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085682300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:57 Heat of formation + Delta-G solvation = 70.790746 kcal Electronic energy + Delta-G solvation = -29109.566639 eV Core-core repulsion = 25267.045858 eV Total energy + Delta-G solvation = -3842.520782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -42.57132 -40.13544 -37.95838 -36.35031 -35.27902 -33.38252 -32.15053 -31.57445 -30.35230 -28.57427 -27.87044 -27.65537 -26.24189 -23.49647 -23.32317 -23.20680 -21.85883 -21.07145 -19.64315 -19.11461 -18.66788 -17.60502 -17.04522 -16.61485 -15.97462 -15.70342 -15.53421 -14.89070 -14.61760 -14.24023 -14.03458 -13.99287 -13.74707 -13.59150 -13.49676 -13.20077 -12.95281 -12.78651 -12.66921 -12.40413 -12.36650 -12.06431 -11.96771 -11.59502 -11.43550 -11.16138 -11.05455 -11.02468 -10.79761 -10.70688 -10.48522 -10.08266 -10.02614 -9.83846 -9.77053 -9.65237 -9.45954 -8.76021 -8.35622 -8.23311 -6.85294 -5.73868 -3.07348 1.75143 2.60914 2.84384 2.90321 3.13512 3.40933 3.45394 3.46452 4.03642 4.33043 4.47281 4.51721 4.61109 4.74073 4.87907 4.92589 4.96456 5.11394 5.14460 5.20381 5.24729 5.27738 5.37053 5.40694 5.45373 5.45995 5.55955 5.57563 5.67702 5.72097 5.83396 5.88268 5.95400 5.97644 6.10596 6.16916 6.18748 6.28614 6.40100 6.56678 6.62521 6.71670 6.82601 7.13346 7.26370 7.44851 7.57756 7.61151 7.88110 8.01944 8.33577 9.07308 9.73623 10.63039 11.42180 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.002518 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.760002 B =11116.259555 C =11825.200797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.197 3.803 3 N -0.482 5.482 4 C 0.008 3.992 5 C -0.022 4.022 6 N -0.557 5.557 7 H 0.418 0.582 8 C -0.039 4.039 9 C -0.097 4.097 10 H 0.099 0.901 11 C 0.515 3.485 12 O -0.532 6.532 13 N -0.606 5.606 14 C 0.077 3.923 15 C 0.118 3.882 16 C 0.132 3.868 17 H 0.046 0.954 18 C -0.156 4.156 19 C 0.155 3.845 20 N -0.602 5.602 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 C -0.099 4.099 30 C -0.033 4.033 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.021 0.979 45 H 0.253 0.747 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.203 12.616 6.451 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 N -0.202 5.202 4 C -0.122 4.122 5 C -0.138 4.138 6 N -0.160 5.160 7 H 0.256 0.744 8 C -0.078 4.078 9 C -0.119 4.119 10 H 0.117 0.883 11 C 0.302 3.698 12 O -0.408 6.408 13 N -0.340 5.340 14 C -0.067 4.067 15 C -0.006 4.006 16 C 0.024 3.976 17 H 0.063 0.937 18 C -0.194 4.194 19 C 0.030 3.970 20 N -0.328 5.328 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.137 4.137 30 C -0.071 4.071 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.703 13.512 6.063 25.455 hybrid contribution 1.074 -1.619 -0.026 1.943 sum -19.629 11.893 6.037 23.732 Atomic orbital electron populations 1.20155 0.84807 1.03966 1.03504 1.23298 0.95433 0.81367 1.06473 1.69924 1.01762 1.28600 1.19904 1.20558 0.92814 0.91189 1.07647 1.20828 0.85508 0.95569 1.11919 1.42782 1.06117 1.09989 1.57108 0.74370 1.20175 0.87766 0.96402 1.03412 1.21283 0.91894 0.96230 1.02479 0.88255 1.20428 0.88228 0.80717 0.80390 1.90718 1.47879 1.65737 1.36477 1.47824 1.23612 1.22174 1.40344 1.21946 0.93459 0.99565 0.91696 1.21814 0.85199 0.94284 0.99259 1.22503 0.89570 0.90614 0.94954 0.93707 1.23740 0.96100 0.99066 1.00519 1.22262 0.83796 0.95806 0.95142 1.46014 1.02579 1.05467 1.78744 1.18977 0.81154 0.93613 1.41149 0.90461 1.24770 0.97981 0.95401 1.02259 1.69812 1.34052 0.98437 1.54594 0.86221 0.84979 0.76673 0.78035 1.21077 1.21613 1.21202 1.21445 0.98167 0.94080 1.00030 1.19978 0.88572 0.96304 1.02288 0.90241 0.90878 0.89172 0.89713 0.89494 0.92382 0.90744 0.91454 0.90655 0.89858 0.90993 0.93693 0.90434 0.96083 0.93698 0.89793 0.90892 0.90588 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.20 1.85 8.16 -154.96 -1.26 0.58 16 3 N -0.48 -5.96 11.25 -6.95 -0.08 -6.04 16 4 C 0.01 0.09 6.98 -82.89 -0.58 -0.49 16 5 C -0.02 -0.22 7.08 -81.85 -0.58 -0.80 16 6 N -0.56 -4.56 6.15 -6.53 -0.04 -4.60 16 7 H 0.42 2.08 8.96 -40.82 -0.37 1.71 16 8 C -0.04 -0.36 5.17 -27.70 -0.14 -0.51 16 9 C -0.10 -1.02 1.70 -91.51 -0.16 -1.17 16 10 H 0.10 0.89 7.22 -51.93 -0.38 0.52 16 11 C 0.52 7.38 6.99 -10.99 -0.08 7.30 16 12 O -0.53 -9.90 15.44 5.55 0.09 -9.81 16 13 N -0.61 -8.33 2.77 -181.58 -0.50 -8.84 16 14 C 0.08 0.73 8.44 59.85 0.51 1.24 16 15 C 0.12 2.10 5.36 -4.04 -0.02 2.08 16 16 C 0.13 2.71 4.56 -66.87 -0.30 2.40 16 17 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.16 -2.85 7.34 -25.81 -0.19 -3.04 16 19 C 0.16 3.66 7.64 -2.98 -0.02 3.63 16 20 N -0.60 -15.38 3.57 -170.77 -0.61 -15.99 16 21 C -0.22 -6.21 10.51 -15.06 -0.16 -6.36 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.32 11.30 55.49 0.63 -26.70 16 25 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 C -0.10 -1.07 4.64 -26.48 -0.12 -1.20 16 30 C -0.03 -0.34 6.30 -27.61 -0.17 -0.51 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 35 H 0.09 0.66 5.18 -51.93 -0.27 0.39 16 36 H 0.06 0.50 6.96 -51.93 -0.36 0.14 16 37 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 38 H 0.07 0.49 6.22 -51.93 -0.32 0.17 16 39 H 0.08 1.50 7.51 -51.93 -0.39 1.11 16 40 H 0.08 1.49 7.83 -51.93 -0.41 1.09 16 41 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 2.00 6.95 -51.93 -0.36 1.64 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 47 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -35.75 386.22 -10.58 -46.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.85 Total: -0.34 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -3.00 Total: 2.87 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.60 Total: -62.16 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.75 -10.58 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085682300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.113 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds