Wall clock time and date at job start Tue Mar 31 2020 19:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30745 * 125.61963 * 2 1 4 4 C 1.33571 * 109.15265 * 180.02562 * 3 2 1 5 5 C 1.35029 * 107.97669 * 359.94220 * 4 3 2 6 6 N 1.35317 * 125.61365 * 180.02562 * 2 1 3 7 7 H 0.96994 * 126.49849 * 0.05470 * 6 2 1 8 8 C 1.50659 * 124.45292 * 180.18191 * 5 4 3 9 9 C 1.53390 * 108.38331 * 16.40498 * 8 5 4 10 10 H 1.09005 * 109.48405 * 70.35228 * 9 8 5 11 11 C 1.50702 * 109.47610 * 190.35993 * 9 8 5 12 12 O 1.21283 * 119.99988 * 119.96785 * 11 9 8 13 13 N 1.34773 * 120.00092 * 299.97766 * 11 9 8 14 14 C 1.46502 * 120.00143 * 354.89953 * 13 11 9 15 15 C 1.46502 * 119.99809 * 175.17556 * 13 11 9 16 16 C 1.52992 * 109.47091 * 274.83662 * 15 13 11 17 17 H 1.09001 * 112.96303 * 66.98068 * 16 15 13 18 18 C 1.53938 * 113.77480 * 295.29731 * 16 15 13 19 19 C 1.53943 * 86.29503 * 222.09173 * 18 16 15 20 20 N 1.47581 * 86.11573 * 23.60757 * 19 18 16 21 21 C 1.36932 * 134.49579 * 155.36096 * 20 19 18 22 22 H 1.07996 * 120.00620 * 175.37260 * 21 20 19 23 23 C 1.38819 * 120.00102 * 355.37099 * 21 20 19 24 24 N 1.31621 * 119.99329 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00417 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46969 * 59.99654 * 25 23 21 27 27 H 1.48496 * 109.47112 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46961 * 300.00076 * 25 23 21 29 29 C 1.53117 * 109.44957 * 310.35416 * 9 8 5 30 30 C 1.50869 * 128.03840 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47322 * 89.97269 * 1 2 3 32 32 H 1.09003 * 109.47389 * 209.97265 * 1 2 3 33 33 H 1.09000 * 109.47406 * 329.97578 * 1 2 3 34 34 H 1.08998 * 109.67661 * 256.67609 * 8 5 4 35 35 H 1.09000 * 109.67839 * 136.12889 * 8 5 4 36 36 H 1.08998 * 109.46914 * 89.99800 * 14 13 11 37 37 H 1.08996 * 109.47528 * 210.00000 * 14 13 11 38 38 H 1.09000 * 109.47181 * 330.00259 * 14 13 11 39 39 H 1.08995 * 109.46957 * 34.84212 * 15 13 11 40 40 H 1.09002 * 109.46761 * 154.84158 * 15 13 11 41 41 H 1.09003 * 113.74199 * 336.43781 * 18 16 15 42 42 H 1.09001 * 113.74222 * 107.74833 * 18 16 15 43 43 H 1.09000 * 113.77087 * 137.90849 * 19 18 16 44 44 H 1.09001 * 113.77401 * 269.19253 * 19 18 16 45 45 H 0.97001 * 119.99296 * 179.97438 * 24 23 21 46 46 H 1.08996 * 109.46928 * 190.03549 * 29 9 8 47 47 H 1.09002 * 109.45877 * 310.01255 * 29 9 8 48 48 H 1.09001 * 109.67621 * 76.91518 * 30 4 3 49 49 H 1.08995 * 109.70296 * 316.39924 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0628 0.0000 4 6 3.5493 0.6842 -0.0006 5 6 3.5849 -0.6656 0.0004 6 7 2.2949 -1.1001 -0.0005 7 1 1.9970 -2.0231 -0.0016 8 6 4.8493 -1.4849 0.0041 9 6 6.0135 -0.5759 0.4175 10 1 5.9201 -0.3232 1.4738 11 6 7.3182 -1.2939 0.1864 12 8 8.1412 -0.8270 -0.5724 13 7 7.5704 -2.4549 0.8226 14 6 6.6272 -2.9623 1.8222 15 6 8.7907 -3.2065 0.5189 16 6 8.5494 -4.1001 -0.6992 17 1 8.3953 -3.5342 -1.6180 18 6 7.4979 -5.1995 -0.4638 19 6 8.4528 -6.1366 -1.2254 20 7 9.5239 -5.2006 -0.8320 21 6 10.8779 -5.3095 -0.6595 22 1 11.4654 -4.4326 -0.4309 23 6 11.4955 -6.5470 -0.7784 24 7 10.7794 -7.6158 -1.0564 25 14 13.3425 -6.6957 -0.5423 26 1 13.7047 -6.2438 0.8251 27 1 13.7520 -8.1119 -0.7210 28 1 14.0393 -5.8494 -1.5440 29 6 5.9813 0.7062 -0.4189 30 6 4.7777 1.5602 -0.0013 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 5.0312 -1.8836 -0.9939 35 1 4.7531 -2.3050 0.7156 36 1 5.8898 -3.6003 1.3351 37 1 7.1681 -3.5394 2.5722 38 1 6.1219 -2.1248 2.3031 39 1 9.6019 -2.5108 0.3043 40 1 9.0593 -3.8247 1.3756 41 1 7.3673 -5.4644 0.5854 42 1 6.5541 -5.0215 -0.9792 43 1 8.5474 -7.1258 -0.7777 44 1 8.2701 -6.1717 -2.2995 45 1 11.2110 -8.4804 -1.1399 46 1 6.9000 1.2695 -0.2559 47 1 5.8954 0.4490 -1.4746 48 1 4.9421 1.9626 0.9983 49 1 4.6451 2.3784 -0.7090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085682300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:48 Heat of formation + Delta-G solvation = 47.814136 kcal Electronic energy + Delta-G solvation = -29110.562980 eV Core-core repulsion = 25267.045858 eV Total energy + Delta-G solvation = -3843.517122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.195 amu Computer time = 20.66 seconds Orbital eigenvalues (eV) -43.28820 -41.29004 -39.61041 -37.28543 -36.50582 -34.27545 -34.08120 -32.19691 -31.25872 -29.84591 -29.72684 -28.45717 -27.24382 -25.32198 -24.64715 -24.05434 -23.06493 -21.75199 -20.98651 -20.42368 -19.69626 -18.70161 -18.35349 -17.87468 -17.24186 -16.92897 -16.51048 -16.41109 -15.93640 -15.68734 -15.12380 -14.93693 -14.77044 -14.62802 -14.43928 -14.13007 -13.90225 -13.87684 -13.66403 -13.45229 -13.33410 -13.22320 -13.10643 -12.90949 -12.68806 -12.56043 -12.47445 -12.34797 -12.27108 -11.99753 -11.88319 -11.78573 -11.56190 -11.32536 -10.88569 -10.83155 -10.77248 -10.68646 -9.60906 -8.95995 -8.89446 -7.89200 -5.23679 1.05370 1.43797 1.46957 1.52852 1.58463 1.98490 2.09742 2.20544 2.48785 3.29778 3.31797 3.44024 3.55556 3.75462 3.78399 3.89081 4.06278 4.15904 4.21013 4.22648 4.29982 4.32905 4.45931 4.53020 4.54872 4.59823 4.63058 4.69186 4.76866 4.79348 4.85133 4.89968 4.95403 4.98511 5.00689 5.08499 5.09980 5.15359 5.21341 5.24647 5.30637 5.35183 5.51146 5.58071 5.74453 5.82527 5.97536 6.47632 6.58910 6.93622 7.17114 7.20995 7.61915 8.57865 9.26185 Molecular weight = 332.20amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.002518 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.760002 B =11116.259555 C =11825.200797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.198 3.802 3 N -0.524 5.524 4 C -0.019 4.019 5 C -0.023 4.023 6 N -0.546 5.546 7 H 0.435 0.565 8 C -0.031 4.031 9 C -0.085 4.085 10 H 0.125 0.875 11 C 0.513 3.487 12 O -0.584 6.584 13 N -0.602 5.602 14 C 0.065 3.935 15 C 0.134 3.866 16 C 0.132 3.868 17 H 0.025 0.975 18 C -0.117 4.117 19 C 0.144 3.856 20 N -0.630 5.630 21 C -0.231 4.231 22 H 0.075 0.925 23 C -0.064 4.064 24 N -0.951 5.951 25 Si 0.974 3.026 26 H -0.273 1.273 27 H -0.292 1.292 28 H -0.284 1.284 29 C -0.094 4.094 30 C -0.026 4.026 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.007 0.993 45 H 0.248 0.752 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.553 12.578 8.324 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 N -0.245 5.245 4 C -0.149 4.149 5 C -0.140 4.140 6 N -0.150 5.150 7 H 0.276 0.724 8 C -0.069 4.069 9 C -0.106 4.106 10 H 0.143 0.857 11 C 0.302 3.698 12 O -0.463 6.463 13 N -0.333 5.333 14 C -0.076 4.076 15 C 0.010 3.990 16 C 0.025 3.975 17 H 0.042 0.958 18 C -0.155 4.155 19 C 0.019 3.981 20 N -0.357 5.357 21 C -0.360 4.360 22 H 0.093 0.907 23 C -0.257 4.257 24 N -0.600 5.600 25 Si 0.802 3.198 26 H -0.198 1.198 27 H -0.218 1.218 28 H -0.211 1.211 29 C -0.132 4.132 30 C -0.065 4.065 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.105 13.474 7.969 27.909 hybrid contribution 1.736 -1.546 -0.664 2.418 sum -21.369 11.928 7.305 25.540 Atomic orbital electron populations 1.20322 0.82152 1.05289 1.04510 1.24001 0.96861 0.81034 1.04640 1.69901 1.02416 1.30418 1.21780 1.20799 0.93020 0.92201 1.08853 1.20810 0.86366 0.95087 1.11765 1.42740 1.05266 1.10760 1.56281 0.72424 1.20118 0.86698 0.96547 1.03538 1.21225 0.90052 0.95549 1.03793 0.85711 1.21104 0.88885 0.80515 0.79270 1.90702 1.49771 1.67083 1.38762 1.47834 1.22928 1.21624 1.40959 1.22320 0.93042 1.01252 0.91009 1.21326 0.86449 0.93379 0.97891 1.22570 0.89076 0.90662 0.95222 0.95785 1.23470 0.95934 0.94879 1.01198 1.22270 0.85472 0.95489 0.94848 1.46444 1.02543 1.07856 1.78817 1.19284 0.82876 0.93586 1.40233 0.90739 1.25563 1.02174 0.95209 1.02781 1.69991 1.35434 0.98553 1.55985 0.85222 0.79986 0.76261 0.78299 1.19842 1.21797 1.21084 1.21349 0.98167 0.94555 0.99129 1.19901 0.87950 0.95910 1.02702 0.89288 0.88172 0.89238 0.90805 0.86809 0.90396 0.90108 0.88448 0.93639 0.89652 0.88897 0.90070 0.93036 0.97512 0.94269 0.90716 0.92723 0.89528 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.23 0.75 0.25 16 2 C 0.20 3.24 8.16 137.97 1.13 4.37 16 3 N -0.52 -12.28 11.25 -175.89 -1.98 -14.25 16 4 C -0.02 -0.43 6.98 41.61 0.29 -0.13 16 5 C -0.02 -0.41 7.08 41.14 0.29 -0.12 16 6 N -0.55 -7.24 6.15 -174.58 -1.07 -8.32 16 7 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 8 C -0.03 -0.48 5.17 29.97 0.15 -0.32 16 9 C -0.08 -1.60 1.70 -11.37 -0.02 -1.62 16 10 H 0.13 1.78 7.22 -2.38 -0.02 1.77 16 11 C 0.51 14.12 6.99 87.66 0.61 14.73 16 12 O -0.58 -22.17 15.44 -3.04 -0.05 -22.22 16 13 N -0.60 -15.26 2.77 -846.77 -2.34 -17.60 16 14 C 0.07 0.96 8.44 127.77 1.08 2.04 16 15 C 0.13 4.71 5.36 86.38 0.46 5.17 16 16 C 0.13 5.38 4.56 45.09 0.21 5.58 16 17 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 18 C -0.12 -4.00 7.34 31.25 0.23 -3.77 16 19 C 0.14 6.86 7.64 86.48 0.66 7.52 16 20 N -0.63 -32.63 3.57 -694.18 -2.48 -35.11 16 21 C -0.23 -13.21 10.51 84.04 0.88 -12.33 16 22 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 24 N -0.95 -57.55 11.30 21.65 0.24 -57.30 16 25 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 29 C -0.09 -2.00 4.64 30.76 0.14 -1.86 16 30 C -0.03 -0.52 6.30 30.03 0.19 -0.33 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 35 H 0.11 1.15 5.18 -2.39 -0.01 1.14 16 36 H 0.08 0.89 6.96 -2.39 -0.02 0.88 16 37 H 0.08 1.16 7.85 -2.39 -0.02 1.14 16 38 H 0.10 0.90 6.22 -2.39 -0.01 0.88 16 39 H 0.05 1.86 7.51 -2.39 -0.02 1.84 16 40 H 0.09 2.97 7.83 -2.39 -0.02 2.95 16 41 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 2.70 6.95 -2.39 -0.02 2.69 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 46 H 0.07 1.72 7.76 -2.39 -0.02 1.70 16 47 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -81.57 386.22 2.01 -79.56 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.13 Total: 10.78 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 7.52 Total: 15.94 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -7.63 Total: -132.58 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -81.57 2.01 -79.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085682300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.377 kcal (2) G-P(sol) polarization free energy of solvation -81.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.67 seconds